Homology
BLAST of mRNA_C-linearis_contig98.17122.1 vs. uniprot
Match:
A0A6H5K045_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K045_9PHAE)
HSP 1 Score: 211 bits (537), Expect = 2.950e-58
Identity = 129/267 (48.31%), Postives = 163/267 (61.05%), Query Frame = 2
Query: 113 LPPRTPLRSA------RRAPVGYRRSLST----------GVQQASPSR-RLAVAPLARSYSQGRDIIDSSHLDGLYFEQEXXXXXXXXXXXXXXXXEERVLPSYPLQN----FGIIDDCCGDDDS----------DSDPVEKVDQPLPAHGEHSAEEIALRRFMSTVAWGPGLAVVKHNRGKGRGRRLLKFNVEEGYLCWSGIFPP--FNKTKVSAQKLLKASRAGCLVNVKMSDQGDVLFKCARVTEAIVLQTGLNGLIRTCNNSS 814
LPPR P A R PVG+RRS S+ ++ SP R + V P + + D++D+SHLDGLYFE + +ER LP YP ++ GI+DDC D+DS D ++D +GE+SAEEIALRRFM+ VAWG GL VVK+NRG+GR RR+LKFN EEG+LCW G PP F+KTKV AQKLLKASR G LV V ++D+GDV F+C R+TEAIVL+ GLNG+IR CNN+S
Sbjct: 2 LPPRPPTFHAASPAKRRPVPVGFRRSSSSVNSSSRGQEEQKRELSPRRSKRLVRPQSARFHSSHDVLDTSHLDGLYFEHQRAQALLRLRQEGRR--QERKLPVYPSKSAAVKVGIVDDCDDDEDSPTAKCPASADDKFTTSELDDTR-RYGEYSAEEIALRRFMTMVAWGSGLNVVKYNRGRGRVRRVLKFNDEEGFLCWCGTLPPYAFHKTKVPAQKLLKASRLGNLVTVGIADEGDVAFRCGRLTEAIVLEVGLNGVIRACNNTS 265
BLAST of mRNA_C-linearis_contig98.17122.1 vs. uniprot
Match:
D8LJT7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJT7_ECTSI)
HSP 1 Score: 114 bits (284), Expect = 1.300e-24
Identity = 85/199 (42.71%), Postives = 108/199 (54.27%), Query Frame = 2
Query: 113 LPPRTP-LRSA-----RRAPVGYRRSLST-----GVQQASPSRRLA-------VAPLARSYSQGRDIIDSSHLDGLYFEQEXXXXXXXXXXXXXXXXEERVLPSYPLQN----FGIIDDCCGDDDSDSDPVEKVDQPLPAH--------------GEHSAEEIALRRFMSTVAWGPGLAVVKHNRGKGRGRRLLKFNVE 601
LPPR P L +A R PVG++RS S+ Q+ R L+ V P + + +D++D+SHLDGLYFE + +ER LP YP ++ GI+DDC DDD DS P K +P AH GE+SAEEIALRRFM+ VAWG GL VVK+NRG+GR RR+LKFN E
Sbjct: 2 LPPRPPPLHAASPAKRRSVPVGFKRSSSSVNSSSRGQEEEQKRELSPRRNNRLVRPQSARFHSSQDVLDTSHLDGLYFEHQRAQELRLRQEGRR---QERKLPVYPSKSAAVKVGIVDDC--DDDEDS-PAAK--RPASAHDKLTTSELDDTRRYGEYSAEEIALRRFMTMVAWGSGLNVVKYNRGRGRVRRVLKFNDE 192
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig98.17122.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 2.95e-58 / Id = 48.31 Expect = 1.30e-24 / Id = 42.71 Sequence A0A6H5K045_9PHAE D8LJT7_ECTSI
Match Name E-value Identity Description
A0A6H5K045_9PHAE 2.950e-58 48.31 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more] D8LJT7_ECTSI 1.300e-24 42.71 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Ec32 ortholog description expressed unknown protein Ec32 ortholog Ec-23_000080.1 Exons 2 Model size 3053 Cds size 735 Stop 1 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622930840.7391503-UTR-C-linearis_contig98:352539..352636 1622930840.7391503-UTR-C-linearis_contig98:352539..352636 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig98 352540..352636 + 1690881276.862547-UTR-C-linearis_contig98:352539..352636 1690881276.862547-UTR-C-linearis_contig98:352539..352636 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig98 352540..352636 + 1622930840.7854507-UTR-C-linearis_contig98:355383..357604 1622930840.7854507-UTR-C-linearis_contig98:355383..357604 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig98 355384..357604 + 1690881276.8907695-UTR-C-linearis_contig98:355383..357604 1690881276.8907695-UTR-C-linearis_contig98:355383..357604 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig98 355384..357604 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622930840.7550733-CDS-C-linearis_contig98:352636..353140 1622930840.7550733-CDS-C-linearis_contig98:352636..353140 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig98 352637..353140 + 1690881276.872722-CDS-C-linearis_contig98:352636..353140 1690881276.872722-CDS-C-linearis_contig98:352636..353140 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig98 352637..353140 + 1622930840.7674563-CDS-C-linearis_contig98:355152..355383 1622930840.7674563-CDS-C-linearis_contig98:355152..355383 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig98 355153..355383 + 1690881276.8816447-CDS-C-linearis_contig98:355152..355383 1690881276.8816447-CDS-C-linearis_contig98:355152..355383 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig98 355153..355383 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig98.17122.1
>prot_C-linearis_contig98.17122.1 ID=prot_C-linearis_contig98.17122.1|Name=mRNA_C-linearis_contig98.17122.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=245bp
MPVSKLPPRTPLRSARRAPVGYRRSLSTGVQQASPSRRLAVAPLARSYSQ back to top mRNA from alignment at C-linearis_contig98:352540..357604+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig98.17122.1 ID=mRNA_C-linearis_contig98.17122.1|Name=mRNA_C-linearis_contig98.17122.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5065bp|location=Sequence derived from alignment at C-linearis_contig98:352540..357604+ (Chordaria linearis ClinC8C monoicous)AGCTGCTGCTGATACCACTTTTCAGGACACAATTGCACCAGCAGACGCCC
ATTTTTCATTTTTCTATCGCAAGTCAGCCTCTTGGAGCAGGGCCACC ATG
CCGGTCAGCAAGCTTCCCCCCCGAACACCCTTGCGTTCGGCGAGACGAGC
GCCCGTGGGCTACCGGCGCTCGCTGAGCACCGGCGTGCAGCAGGCGTCAC
CAAGTCGTCGCCTTGCTGTCGCGCCTCTTGCCCGCTCTTACTCACAGGGC
CGAGACATCATAGACAGCTCGCACCTCGACGGCCTGTACTTCGAGCAGGA
GCAGCAGCAGCTGCAGCAACAACAGCATCAGCAGCGGCAGCGGCAGCGGG
AGGAGAGGGTTCTTCCTTCCTACCCCTTACAGAACTTCGGTATCATCGAT
GACTGCTGTGGCGATGATGATAGCGACAGCGATCCTGTGGAGAAGGTCGA
CCAACCTCTGCCCGCGCACGGGGAGCACTCGGCAGAAGAGATCGCGCTAA
GGAGATTCATGAGCACCGTCGCTTGGGGGCCCGGATTGGCTGTGGTGAAG
CACAACCGCGGCAAGGGACGGGGTCGTCGGCTGCTCAAGTTTAACGTCGA
G GTGAGACAAGAACGACGGTTTACATTAGAAGCCGCCGTAAGACGTTACG
CATGTAACCAAAAGCCGGGTTGATGTTATGTGGGAACCGCCTCCTGCAGA
AGCATACCTACAGTTTTGGAGTTGCCGCTGAGCTCTCGGGCGCTAATGAT
GCTGTCCTGGACCGAGACCGTTGGGTCCGGAGCAATCGGTTCCTCCTTAC
AGACGCTGTGAGCTCGCTGTGCGAGCGAGCCCCAATTCTCAATACAGCAC
AGCAGGAAACATGCGAGATTTTGAGAGGTCGGAATTCGCAACATCGTGAC
AACAGACGGCTGACACTGCTGAGTAGGCAAATCTTGTGTAAAGCGAAGGC
TGTATACCCTCTATCTAGGCATGTAAAGCTCTGCGTGCGCGCTACAATTT
TATTTCCTTCGTTTGCCTGAAGAGCTCGTCGTCTATCCGACCTGCGCTGG
CTTTCGAGAAGGCGCATCGAAGTGTGGGTACATGCAGATTTTTGGTGGAC
ATGCTAAGATATTCCGCATTTTGGCTCCATCAAGCTTACATACGTAGACG
TGTAGTCTTATGTCTAAAATCTGCGATCTACCGCTGTTCCGAGGGTAAGA
CCTCTGTAGATCTGGTCGAGGCTTGCGTACTACGCAGGTGTGTTGAGCTC
GTGTAGGTGTCAGTGCTGATCCAGTGCCGCGGCTGATCGCGGTTCACACA
CGCCCCGAGCACGCGAGCAAACCCACTACTTCATTGTTGTTACGAGTTTT
CTGTCAAAAGTGCACCCGACTTTGTTTAGTCGCGAAAGAGCCGGTGATTG
CCCAGCCAGCGGAAAAGGGGCCGTCCGCCCGCGACTCATCATAGTTTGGG
TTACTTAGCGCCGCTGTCGTAAGATATGTCGGCAGAAACGCTCCATCACT
TTTTTCCTTCGTCAGGAGATCCCGCGCACTCCGCTCCCTAACAAAAGTGC
AAGGACTCTGTTGGAACGGTTGGAACCCAGGCTCCCTAACGCAAGTGCAA
GTCTAATGGGAGCGACTTTCAAATTTTTCAGCGCGGACACACTTTTTTTG
TGCTCTTTGTTTGGCTCGCTCTTGGTTTGGCGCTTGTTTCATGTTCTCTG
CCTTTCCGATCTCCTCCAAGCTGCTTCTCGGCCGGCCGCTCTCCGCTCTC
TGCCCCAACCATTCCTGGGCTGTATGGTTCTTACGAGATGGCAGCAGCAT
TGCATTGTTGACGTTGATTGTACATATTTACGTCCGGTGCGTACAGCAGT
ATTCTCGTACAAATCATACTTCGAATGTGTCGAATATGTATCCTTACATC
GTACTGCGATAAATTACATCCACAACTTTTTTTTTTTTTCTTAGTTTCTT
TTCGGCGTTAAGTTGCCCAGTTGTGTGACCACGGGCTCCCACGGATGTTT
TGGAATATAGAGCTATAAATGTGAGAAACAAACAAAAAACATCCACAACT
ACAACTCGGAATTGAATGCCAAAATAAATACCATTGTAGGATGATGTAAC
AGAGGATATACGGAGTAACATGTGTGTGAGCCTGTGATGAGTTTCCCGAA
AGTTTCCGAACAGCGATGGAATGCTTGTAGACTATAGAGCATAGTCTAGC
TATCATACATCGTACTCGTATATCTATTGCGCGTGTATTTTCGATGCTCC
GGGCGCGCTCCTCGCTCCTTGTACATACTTGGAAGCAAACCGTGGTTCGT
GTAATACTTCGAAGTAAATACCAAACATACATACCAGGTACCTGTGTTTT
TTCAGTCGAAACTTGTACGGGCAGCATCGTTCGCGTATTAACTCCTTGTC
AGCATCTATCTGTAGTCGGTTGCAAAAATCAAACTGCATGTATGTATTGA
ACTAGTCTATCAACCCACCCAGTTCGGGACTTAGACTATCTCTTTGAGGG
GAGGTTCTTTCTTTGATGCTGTTTTGATTTACAAAAAACTCCAGCCCTCT
GACAGGGCGTTCCGCCTCCCCACCCCTGGCCCTCCCACAATATCTCCACT
TTCACTTTGCCAGGAGGGATATCTCTGCTGGTCAGGGATTTTTCCGCCCT
TCAACAAGACCAAGGTCTCAGCCCAGAAGCTGCTCAAGGCGTCCAGGGCC
GGCTGCCTCGTGAACGTAAAGATGTCGGACCAGGGGGACGTGCTTTTCAA
GTGCGCTCGGGTGACTGAGGCCATCGTCCTGCAGACCGGCTTGAATGGGC
TCATTCGCACGTGCAACAACAGCAGCAGCAGCAGTAAGGAGTGA ACAGAG
AAGAGTGGTGGGGTGATGTCATCGGAACAAGAAGTCGAAAGTAGGCAACA
ATAAGCAGCCTTGGTCAAGAAGGAGTAGCGCTCTTGGTCTTCCAACCTCG
AGGGAGGGAAGGCTGGTTCGCGTAGTCTTCCTTTCAATGGTCGGTTGTGG
CCTGGCCCCTGTTGATGATTACTCTCCCCACATACATACATGTGATTGCC
GTCTACCCTCTTAATACTTACTACACAGAAAGGCGATTTCTGTGGGTGGT
GTGGTGTTGATTTTGGTGCAGGGCTGAGCTTCTCCTCTCCTCTTGCGGGT
GTGGCGTGCGTAGAAAGCTCCAAACATCCAAATATCCTATGGGGCACACA
TAGAGGACCGAGACTAGAGAGGGATGGGTTATTATATGACATATGGCATA
GACTTTGGTTGCTGTGCATGTTTTTTGGGGGCGACACGGTGTGTTCGTCT
ATAATAATAATGCGTTGTTCGATTGACCTGGCACAGCATGAGTACGTTCA
TTTCAAAAGTCAGAGGAGCACAAGCACAAGCCCCCTGGCGAGCTTTGGCT
GATTTGCGATACAGTATTTAAATACGAAGTATTTCGCGTGCGAGAGCTCA
AAAGGCGCAGGTTAGGGGGATACGTATCTCTTGTGGGTTTGGCGGGCGGG
TGGACAGCGTAGGCGCTTTTTTTGAAAGGTTCACTCTGCTTTCCTTTTCA
TTATTGATAGATACATACTCTGCATCGTAATTTAGCGGGGCTGACCCGCC
CCAACCGTTCTTCCCCGTATCTATCATAGATACACCCGGTCGAGACTCAT
TTGGGCCGTCTCGTACGAAGGAGAATTGGCGACAAACCCTCAACGTCATT
GGGGCTTGTGCTTTTCCCGTTTCCCCAGAGTTTAGTCTAATAACTTAGGG
TTGATGTTTACTCACTCGTGGTTGGGTGAGTTGTTGGGCCAGGAGCGGAT
GCGAAGAGTGCCACTCTCGACGAGGAGACAGCTCGCCCACCTATCTATAC
ACTCGTGTTTTCAGGTTCAGGGGCAGCGTTTACGAGTGCTTGGAAGCCTG
TTGTATTATCTGCTGCAGTATAGTAATAGGTGGTCGTATCGTCGTATTGT
GTCTTTGAGAGCCTCTGGTGCTCGATTCTGATGCATGTAGCCTTGGGTTT
CCCGATTTCTAAAGAACGGATTCATTCATGTCATCCGGTCCGAGCATAAT
TAGTGTGCTAGCTTTATTTTCGTAATCTCACGTACTCTCTTGCTGACTTA
CTTGGCTCGTGTCTCGTCAACTCGGTTTCGACAGGAAGGTCGTTCTTTCT
TTTCCATGTAATATGACGTTGCTGTCTGTCGTTGGTGCAACTCCCTCACC
GCCGCAGGCGTTTTTGATGCAGAAATTGGTTGTTGGCAGTATGTGTGCGT
GTTTTGTGCTGTGCGCGCCAGTATAAGGTAAGTAAGGCTACATGCTTGGC
ATATAGATCTATATATCTGGGGAAGCTTCGGGAAGAGGAAAATATTAAAT
TGTTTTGGTCGTTGTTCATCATGTTTGAGGGCGTTTTTTTCGGAGTATCG
TTTGTCTCGTAGTCTACGTAGTAGGTCAGGGCGTGGGCACTTACGTACGT
ACCTGCATGGTTTCTTCTGATTTTATGGAAAAAAAAACTTATCACATACA
TAGTGGCGCAGTTCGCCTCGCTACGCTGGAAGAGAGAAAGAGAGGAGCCT
CGCGTGCTTGTTGCAGTAAAGTTCGTCCTTAAATATTCAATCCTGACTCC
GGCTCTACGAGTTTAATCCAGTTTAAAAGGCAGACGGTATCATCCTGGTC
CCTGTTTTTTGCGCTACGGTTTGGGAAATCCCTATTATCCAGTACAGCAG
TACACGTCTAGAACACTTTCGTTGCGTATCTGGTGTGCGTAGAGGGCATA
CTTCGTATCTATCTATGCACACATTTTTTGTCCGGAGAGCGTTCGGAAGA
GGGTCGCTGTTGCTCTTTATGGTGGTCAAGAGATTCGGGCAGCTCTTTCG
GAGCAGCGCTCTTCTGCGTAGCTGTAGCGTGAGACAACCAAATAGATGTA
GCTTGAATTGGGAGGAGAGAGAGGCTGCGCGCGTGGATATTGCTCGGTAT
GCGAAGGTGCCGAGTTTGTTGGGGGTTCCACTCAGCTCTTTTTATCTTTT
GTCTTGATGTTTCGAAAATAACCCTTCTTTTTTAATTTAGATGAAAAAAA
CGTGCGCATCCAACT back to top Coding sequence (CDS) from alignment at C-linearis_contig98:352540..357604+
>mRNA_C-linearis_contig98.17122.1 ID=mRNA_C-linearis_contig98.17122.1|Name=mRNA_C-linearis_contig98.17122.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1470bp|location=Sequence derived from alignment at C-linearis_contig98:352540..357604+ (Chordaria linearis ClinC8C monoicous) back to top