prot_C-linearis_contig95.17003.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Homology

BLAST of mRNA_C-linearis_contig95.17003.1 vs. uniprot
Match: D7G7N1_ECTSI (RNA polymerase sigma factor, cyanobacterial RpoD-like family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7N1_ECTSI)

HSP 1 Score: 595 bits (1535), Expect = 1.280e-200
Identity = 452/774 (58.40%), Postives = 501/774 (64.73%), Query Frame = 0

Query:   40 TARRVRPRSRPPSPPSVDRSTSLVGRNLRRTPSRRAAVSLS----TPA------APAPGMSMP--LFLSLLAVSIGAAPXXXXXXXXXXXXXXXXXXXXXXXSSWPRFSFFSAXXXXXXXGTTPTGAFCFPARSRNRLVVSSEGCGGGGLRHSLTRRLRRRSAGAALSAAAAPGRSSSLGRCLLQVGSSVGSSTAPPSFSLR----GISRLGGAVHP---RWVGGGEGXXXXGH---VGRAALL---SRVRSMVGLGHTDDWGSXXXXXXXXXXXXXXXXGAAAGAGPAADWDDGGWDNAELLSSFGFAGDSGDSHGSGAIGTWGDGAAEGTMASSLSERDAARLEEVGIMVRELEV----GAXXXXXXXXXXXXXXXXXXXXTPATPQPRSPREEGDGGPVDGGHTAAERRADFVGGVATGNAHLRMTCGDTVFFGQLADLMQGLHRQSGERKFLTHAGEMALGAKVQRYRRLIEAQEKAEKEDGHRPPLAEVARSSAGLSQDEFAAVMQEGMEARQKLVVCNLALVVSLANKYKRSHFNCNCLQTLIQEGTIGLIRAAERYDPGKGFRFTTYAIWWIEARLRVSVQTEERMIHVPMWVKNKYNIVSRSIPKLRETLGREPTCEEIAAQVSIDTDSKVVLTPKRVKELRMWVAFHRKHESLDVPVEVGTRLPLDCSTIEHGVKAAEPSLESTSELEIQRDFLESCLAQDLSRIQRKILRMKVGLGGEKGKNRQEISRALKMPFNNVISEERKAFYKLRGLQRDGEYPSFEELK 784
            TARR+RPRS  P PP V   +   GR   R    + A  +S    +PA       PA G+SM   L LSLLAVS     XXXXXXXXXXXXXXXXXXXX   S +   +F SA                 P   R  + V S        R + TRRLRRRS  +  S+AA                S+ G S AP +   R      S   GA  P    W+  G      G    +    LL   SR+RS   +G TDDW +                    GAG   +WDD    + +LL+SFGF G       +    +  D       A SLSERDAARLEEVGIMV ELE     G XXXXXXXXXXXXXXXXXXXX              D    +   TA  R+ D  G  A  +A LRMTCGD VFF  LA+LMQG+HRQSG RKFL H  EM LG  VQRYR LIEAQEKAEK+ G RP L +VARS AGLS++ FA+VMQ GMEARQKLVVCNLALVVSLANKYKRSHF+C CLQTLIQEGTIGLIRAAERYDP KGFRFTTYAIWWIEARLRVSVQTEER IHVPMWVKN+YN V RS+PKLR++LGREPT EE+AAQV IDT+SKVV+TPKRV+EL  WV+FHRKHESLDVP+EV T +P DCSTIE GVKA +PS ESTSELEIQRDFLESCL QDLS+IQRKILRMKVGLGGEKGKNRQEISRALKMPFNNVISEERKAFYKLRGLQR G YPSFEELK
Sbjct:   26 TARRIRPRSAAPPPPGV--GSVGGGREACRQAYLKQAGGVSGGAFSPAWTGGVSIPASGLSMSTALLLSLLAVSGXXXXXXXXXXXXXXXXXXXXXXXXTAPSPFSSTAFCSAWP---------------PPPLRVCVGVPSA------WRPASTRRLRRRSNASNASSAAR---------------STAGRSRAPSALCSRRNSISCSWSTGAPPPPTPSWLWKGRRARSYGGGRCLSGGGLLPPRSRLRSRTQIGLTDDWSTGEASHRPED----------GGAGWNCEWDD----DVDLLTSFGFDGXXXXXXPADTDASTVD------DAPSLSERDAARLEEVGIMVEELEGNRGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNDADIKELMRTA--RKGDLAGR-AMDSARLRMTCGDPVFFAHLAELMQGVHRQSGGRKFLNHEEEMELGETVQRYRGLIEAQEKAEKDSGRRPRLRDVARS-AGLSEEAFASVMQAGMEARQKLVVCNLALVVSLANKYKRSHFDCGCLQTLIQEGTIGLIRAAERYDPSKGFRFTTYAIWWIEARLRVSVQTEERFIHVPMWVKNQYNTVHRSVPKLRKSLGREPTSEELAAQVEIDTNSKVVVTPKRVEELETWVSFHRKHESLDVPLEVSTPVPADCSTIEDGVKAPDPSTESTSELEIQRDFLESCLCQDLSKIQRKILRMKVGLGGEKGKNRQEISRALKMPFNNVISEERKAFYKLRGLQRGGGYPSFEELK 737

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BLAST of mRNA_C-linearis_contig95.17003.1 vs. uniprot
Match: A0A835Z811_9STRA (RNA_pol_sigma70 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z811_9STRA)

HSP 1 Score: 157 bits (397), Expect = 1.790e-38
Identity = 104/313 (33.23%), Postives = 169/313 (53.99%), Query Frame = 0

Query:  464 KFLTHAGEMALGAKVQRYRRLIEAQEKAE---KEDGHRPPLAEVARSSAGLSQDEFAAVMQEGMEARQKLVVCNLALVVSLANKYKRSHFNCNCLQTLIQEGTIGLIRAAERYDPGKGFRFTTYAIWWIEARLRVSVQTEERMIHVPMWVKNKYNIVSRSIPKLRETLGREPTCEEIAAQVSID----TDSKVVLTPKRVKELRMWVAFHRKHESLDVPVEVGTRLPLDCSTIEHGVKAAEPSLESTSELEIQRDFLESCLAQDLSRIQRKILRMKVGLGGEKGKNRQEISRALKMPFNNVISEERKAFYKLR 769
            + L+   E+ LGA VQ    L+ A+ +     +  G  P LAE A  +   S+  + A ++ G+ A++ +V CNL LVV+LA K++        L  LIQEG +GL+RAAE+YDP +GFRF+TYA WW+  RL +SV++  R++ VP+ V +++  + R++  L   LGR PT  E+AA+  +        +  + P    +  +  A HR  + L       T L +  +  + G  A   ++E   E ++ R+ LE  +   LS+ +R I+RM+VGL   + K   E++   ++P   ++ EER A  KLR
Sbjct:   53 RLLSAEEELRLGALVQE---LVAAEARCAALAEALGREPTLAERAADAGAASEALYTARLRRGLWAKRAMVTCNLRLVVALAAKFQGQG---PPLADLIQEGAVGLVRAAEKYDPARGFRFSTYATWWVRQRLHLSVRSH-RLVRVPLRVHSQFEALRRAVRALAGELGRRPTEGELAARCGLTPARAAHVRAAMLPPESLDRELHFASHRSEQGLV------TMLDVTPAAADDGTSAGTATMEQALEWDLLREDLERAMRASLSQRERDIVRMRVGLDDGRAKTATELAAVFQLPAYVILREERNALTKLR 352

[Close]

BLAST of mRNA_C-linearis_contig95.17003.1 vs. uniprot
Match: A0A1C0VBJ4_9CYAN (RNA polymerase subunit sigma n=2 Tax=unclassified Limnothrix TaxID=2632864 RepID=A0A1C0VBJ4_9CYAN)

HSP 1 Score: 147 bits (371), Expect = 1.650e-35
Identity = 106/324 (32.72%), Postives = 171/324 (52.78%), Query Frame = 0

Query:  451 DLMQGLHRQSGERKFLTHAGEMALGAKVQRYRRLIEAQEKAEKEDGHRPPLAEVARSSAGLSQDEFAAVMQEGMEARQKLVVCNLALVVSLANKYKRSHFNCNCLQTLIQEGTIGLIRAAERYDPGKGFRFTTYAIWWIEARLRVSVQTEERMIHVPMWVKNKYNIVSRSIPKLRETLGREPTCEEIAAQVSIDTDSKVVLTPKRVKELRMWVAFHRKHESLDVPVEVGTRLPLDCSTIEHGVKAAEPSLESTSELEIQRDFLESCLAQDLSRIQRKILRMKVGLGGEKGKNRQEISRALKMPFNNVISEERKAFYKLRGLQRD 774
            DL++   R+ G    LTH  E+ LG +VQR   L E ++K     G+ P LAE A ++ GLS DE  A ++EG  A++K+V  NL LVVS+A KY + + +   L  LIQEGTIG+ R  E++DP KG+RF+TYA WWI   +  ++  + R I +P+ +  K N + ++   L + LGR  T  E+  ++         L+PK++++        R  + L + + VG     +   +   ++   PS E  +     R  +E+ +A DL+  QR++L ++ GL   +     +I   L++    V   ER+A  KLR  + D
Sbjct:    9 DLVRAYLREIGRVPLLTHEQEIVLGKQVQRLNVLQEEKDKLTLRLGYEPGLAEWA-AAIGLSLDELKAAIREGDRAKRKMVEANLRLVVSVAKKYIKRNVD---LLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRTLSQQLGRSATIAELGDEIG--------LSPKQIRDY-----LERARQPLSLDLRVGDNQDTELGEL---LEDEGPSPEEFATQSSLRGDIETIMA-DLTPQQREVLSLRFGLSDGQALTLAKIGDRLQISRERVRQIEREALTKLRKHKAD 311

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BLAST of mRNA_C-linearis_contig95.17003.1 vs. uniprot
Match: UPI001A058DB0 (RNA polymerase sigma factor, RpoD/SigA family n=1 Tax=Oscillatoriaceae cyanobacterium M7585_C2015_266 TaxID=2774341 RepID=UPI001A058DB0)

HSP 1 Score: 147 bits (371), Expect = 1.650e-35
Identity = 107/324 (33.02%), Postives = 170/324 (52.47%), Query Frame = 0

Query:  451 DLMQGLHRQSGERKFLTHAGEMALGAKVQRYRRLIEAQEKAEKEDGHRPPLAEVARSSAGLSQDEFAAVMQEGMEARQKLVVCNLALVVSLANKYKRSHFNCNCLQTLIQEGTIGLIRAAERYDPGKGFRFTTYAIWWIEARLRVSVQTEERMIHVPMWVKNKYNIVSRSIPKLRETLGREPTCEEIAAQVSIDTDSKVVLTPKRVKELRMWVAFHRKHESLDVPVEVGTRLPLDCSTIEHGVKAAEPSLESTSELEIQRDFLESCLAQDLSRIQRKILRMKVGLGGEKGKNRQEISRALKMPFNNVISEERKAFYKLRGLQRD 774
            D+++   R+ G    LTH  E+  G +VQR   L E +EK  ++ G+ P LAE A+  AG+S DE    + EG  A++++V  NL LVVS+A KY + + +   L  LIQEGTIG+ R  E++DP KG+RF+TYA WWI   +  ++  + R I +P+ +  K N + ++  +L + LGR  T  E+A  +         LTPK+++E        R  + L + + VG     +   +   ++   PS E  +     R  LE+ +A+ L+  QR++L M+ GL   +     +I   L +    V   ER+A  KLR  + D
Sbjct:    9 DIVRAYLREIGRVPLLTHEQEIIYGKQVQRLTALQELKEKLAEKLGYEPSLAEWAKE-AGMSTDELQRAIAEGELAKRRMVEANLRLVVSVAKKYIKRNVD---LLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLAQNLGRAATVAELAEALE--------LTPKQIREY-----LERSRQPLSLDLRVGDNQDTELGEL---LEDTGPSPEDFAINSSLRADLENIMAE-LTPQQRQVLSMRFGLEDGQALTLSKIGDRLNISRERVRQIEREALSKLRKRKAD 311

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BLAST of mRNA_C-linearis_contig95.17003.1 vs. uniprot
Match: B4VTM7_9CYAN (RNA polymerase sigma factor, cyanobacterial RpoD-like family n=2 Tax=Coleofasciculus chthonoplastes TaxID=64178 RepID=B4VTM7_9CYAN)

HSP 1 Score: 147 bits (371), Expect = 2.240e-35
Identity = 105/324 (32.41%), Postives = 173/324 (53.40%), Query Frame = 0

Query:  451 DLMQGLHRQSGERKFLTHAGEMALGAKVQRYRRLIEAQEKAEKEDGHRPPLAEVARSSAGLSQDEFAAVMQEGMEARQKLVVCNLALVVSLANKYKRSHFNCNCLQTLIQEGTIGLIRAAERYDPGKGFRFTTYAIWWIEARLRVSVQTEERMIHVPMWVKNKYNIVSRSIPKLRETLGREPTCEEIAAQVSIDTDSKVVLTPKRVKELRMWVAFHRKHESLDVPVEVGTRLPLDCSTIEHGVKAAEPSLESTSELEIQRDFLESCLAQDLSRIQRKILRMKVGLGGEKGKNRQEISRALKMPFNNVISEERKAFYKLRGLQRD 774
            DL++   ++ G    LTH  E+  G +VQR   L + +E   ++ G+ P L E A++S+ LS+ E  + ++ G  A++K+V  NL LVVS+A KY + + +   L  LIQEGTIG+ R  E++DP KG+RF+TYA WWI   +  ++  + R I +P+ +  K N + ++  +L +TLGR  T  E+A ++         LTPK+V+E        +  + L + + VG     +   +   ++ + PS E  +     +  LE  +A DL+  QR++L ++ GL   +     +I   LK+    V   ER+A  KLR  Q D
Sbjct:   21 DLVRTYLQEIGRVPLLTHEQEILYGKQVQRLNALEQTKESLFEQLGYEPTLCEWAKASS-LSEAELQSCIRAGQTAKRKMVEANLRLVVSVAKKYIKRNVD---LLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQTLGRAATISELATELD--------LTPKQVREY-----LEKARQPLSLDLRVGDNQDTELGEL---LEDSGPSPEDFATYSAMQVDLEKLMA-DLTEQQREVLMLRFGLVDGQPMTLAKIGDQLKISRERVRQIEREALSKLRKRQAD 323

[Close]

BLAST of mRNA_C-linearis_contig95.17003.1 vs. uniprot
Match: Q2JIA4_SYNJB (RNA polymerase sigma factor n=7 Tax=Synechococcus TaxID=1129 RepID=Q2JIA4_SYNJB)

HSP 1 Score: 147 bits (371), Expect = 4.900e-35
Identity = 110/330 (33.33%), Postives = 178/330 (53.94%), Query Frame = 0

Query:  451 DLMQGLHRQSGERKFLTHAGEMALGAKVQRYRRLIEAQEKAEKEDGHRPPLAE-VARSS-----AGLSQDEFAAVMQEGMEARQKLVVCNLALVVSLANKYKRSHFNCNCLQTLIQEGTIGLIRAAERYDPGKGFRFTTYAIWWIEARLRVSVQTEERMIHVPMWVKNKYNIVSRSIPKLRETLGREPTCEEIAAQVSIDTDSKVVLTPKRVKELRMWVAFHRKHESLDVPVEVGTRLPLDCSTIEHGVKAAEPSLESTSELE-IQRDFLESCLAQDLSRIQRKILRMKVGLGGEKGKNRQEISRALKMPFNNVISEERKAFYKLRGLQR 773
            DL++   ++ G    L    E+AL  KVQ Y +L++ + + +KE G  P LAE VA+++     A L+ ++   + + G  A++ ++  NL LVVS+A KY+        L  LIQEGT+GL RA E++DP KG+RF+TYA WWI   +  ++ T+ R I +P+ +  K N + ++  KL +  GR PT E+IA+++         +TP +V+EL +     R   S+ +  +VG     +   +   ++  + S E T   E + RD  +  L  DL+  +R ++RM+ GLG  +  +  EI RAL +    V   E KA  KLR  +R
Sbjct:   46 DLVRLYLQEIGRVPLLGRDEEVALAQKVQDYMKLLDLRLRLQKELGRDPTLAEWVAKANQYPEWAQLTPEKLQQIQRIGKRAKEHMIKANLRLVVSVAKKYQNRGLE---LLDLIQEGTLGLERAVEKFDPKKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKLSQEKGRTPTIEDIASELE--------MTPPQVRELLV-----RVPRSVSLETKVGKDKDTELGDL---LETDDISPEETMMREALHRDLQQ--LLSDLTSRERDVIRMRFGLGDGRTYSLAEIGRALDLSRERVRQIEAKALQKLRQPKR 354

[Close]

BLAST of mRNA_C-linearis_contig95.17003.1 vs. uniprot
Match: A0A3M1T6H9_9CYAN (RNA polymerase sigma factor, RpoD/SigA family n=1 Tax=Cyanobacteria bacterium J055 TaxID=2420338 RepID=A0A3M1T6H9_9CYAN)

HSP 1 Score: 145 bits (366), Expect = 7.750e-35
Identity = 106/328 (32.32%), Postives = 174/328 (53.05%), Query Frame = 0

Query:  451 DLMQGLHRQSGERKFLTHAGEMALGAKVQRYRRLIEAQEKAEKEDGHRPPLAEVARSSAGLSQDEFAAVMQEGMEARQKLVVCNLALVVSLANKYKRSHFNCNCLQTLIQEGTIGLIRAAERYDPGKGFRFTTYAIWWIEARLRVSVQTEERMIHVPMWVKNKYNIVSRSIPKLRETLGREPTCEEIAAQVSIDTDSKVVLTPKRVKELRMWVAFHRKHESLDVPVEVGTRLPLDCSTI--EHGVKAAEPSLEST--SELEIQRDFLESCLAQDLSRIQRKILRMKVGLGGEKGKNRQEISRALKMPFNNVISEERKAFYKLRGLQRD 774
            DL++   R+ G    LTH  E+ LG +VQR+  L E +E+   E  +R P      ++AGLSQ E   V+  G  A++K+V  NL LVVS+A KY + + +   L  LIQEGTIG+ R  E++DP KG+RF+TYA WWI   +  ++  + R I +P+ +  K N + +   +L + LGR  T  E+AA++         LTP++++E        R  + L + + VG     + + +  + G    E +++S+  +ELE+        L +DL+  Q+++L ++ GL   +     +I   L++    V   ER+A  KLR  + D
Sbjct:    9 DLVRTYLREIGRVPLLTHEQEILLGKQVQRFAALKEIKEQLA-EKLNREPTENEWSNAAGLSQQELQKVIDSGEVAKRKMVEANLRLVVSVAKKYLKRNVD---LLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKVQRRLTQQLGRTATTAELAAEME--------LTPRQIREY-----LERARQPLSLDLRVGDNQDTELADLLEDEGPSPEEFAVQSSLRNELEV--------LMEDLTPQQKEVLSLRFGLQDGQSMTLAKIGARLQISRERVRQIEREALTKLRKRKAD 311

[Close]

BLAST of mRNA_C-linearis_contig95.17003.1 vs. uniprot
Match: UPI0019DF3EF8 (RNA polymerase sigma factor, RpoD/SigA family n=1 Tax=Leptolyngbyaceae cyanobacterium T60_A2020_046 TaxID=2747813 RepID=UPI0019DF3EF8)

HSP 1 Score: 145 bits (365), Expect = 1.030e-34
Identity = 109/328 (33.23%), Postives = 171/328 (52.13%), Query Frame = 0

Query:  448 QLADLMQGLHRQSGERKFLTHAGEMALGAKVQRYRRLIEAQEKAEKEDGHRPPLAEVARSSAGLSQDEFAAVMQEGMEARQKLVVCNLALVVSLANKYKRSHFNCNCLQTLIQEGTIGLIRAAERYDPGKGFRFTTYAIWWIEARLRVSVQTEERMIHVPMWVKNKYNIVSRSIPKLRETLGREPTCEEIAAQVSIDTDSKVVLTPKRVKELRMWVAFHRKHESLDVPVEVGTRLPLDCSTIEHGVKAAEPSLES-TSELEIQRDFLESCLAQDLSRIQRKILRMKVGLGGEKGKNRQEISRALKMPFNNVISEERKAFYKLRGLQRD 774
            Q  DL++   ++ G    LTH  E+ LG  VQR   L   +E  E++ G  P  AE A +S GLS    AA ++EG +A++K+V  NL LVVS+A KY + + +   L  LIQEGTIG+ R  E++DP KG+RF+TYA WWI   +  ++  + R I +P+ +  K N + R+  +L +  GR  T  E+AA++         L+PK V+E        +  + L + + VG     + S +   ++   PS E   ++  ++RD     L  DL+  QR++L ++ GL   +     +I   L +    V   ER+A  KLR  + D
Sbjct:    5 QNTDLVRTYLKEIGRVPLLTHEEEIVLGKCVQRLTELERHREALEEKLGRSPTQAEWAEAS-GLSTQALAAAIREGEQAKRKMVEANLRLVVSVAKKYIKRNVD---LLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKRAQRQLSQKHGRTATVSELAAELE--------LSPKLVREY-----LEKSRQPLSLDLRVGDNQDTELSDL---LEDDGPSPEEFATQAALRRDL--DKLMVDLTPQQRQVLNLRFGLDDGQTMTLAKIGEMLSISRERVRQIEREALTKLRKHRSD 310

[Close]

BLAST of mRNA_C-linearis_contig95.17003.1 vs. uniprot
Match: UPI0016822587 (RNA polymerase sigma factor, RpoD/SigA family n=1 Tax=Microcoleus sp. FACHB-831 TaxID=2692827 RepID=UPI0016822587)

HSP 1 Score: 145 bits (365), Expect = 1.050e-34
Identity = 106/328 (32.32%), Postives = 168/328 (51.22%), Query Frame = 0

Query:  451 DLMQGLHRQSGERKFLTHAGEMALGAKVQRYRRLIEAQEKAEKEDGHRPPLAEVARSSAGLSQDEFAAVMQEGMEARQKLVVCNLALVVSLANKYKRSHFNCNCLQTLIQEGTIGLIRAAERYDPGKGFRFTTYAIWWIEARLRVSVQTEERMIHVPMWVKNKYNIVSRSIPKLRETLGREPTCEEIAAQVSIDTDSKVVLTPKRVKELRMWVAFHRKHESLDVPVEVGTRLPLDCSTIEHGVKAAEPSLESTSELEIQRDFLESCLAQDLSRIQRKILRMKVGLGGEKGKNRQEISRALKMPFNNVISEERKAFYKLRGLQRD-GEY 777
            DL++   R+ G    LTH  E+  G +VQR   L E +   ++  G+ P L + ARS AG+ + E    +  G  A++++V  NL LVVS+A KY + + +   L  LIQEGTIG+ R  E++DP KG+RF+TYA WWI   +  ++  + R I +P+ +  K N + ++   L + LGR  T  E+AA++         LTPK+V+E        R  + L + + VG     +   +      +     + S L++    LE  +A DL+  QR++L ++ GL   +     +I   L +    V   ER+A  KLR  + D GEY
Sbjct:    9 DLVRTYLREIGRVPLLTHEQEIVFGKQVQRLTNLQEVKNSLQEVLGYEPSLTDWARS-AGIEETELNNAIAAGETAKRRMVEANLRLVVSVAKKYIKRNVD---LLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRYLAQQLGRAATAAELAAELE--------LTPKQVREY-----LERARQPLSLDLRVGDNQDTELGELLEDTGPSPEEFATQSSLQVD---LEKIMA-DLTPQQREVLALRFGLADGQALTLAKIGARLNISRERVRQIEREALSKLRKRKADMGEY 315

[Close]

BLAST of mRNA_C-linearis_contig95.17003.1 vs. uniprot
Match: UPI000EFC7652 (RNA polymerase sigma factor, RpoD/SigA family n=1 Tax=Leptolyngbya sp. BC1307 TaxID=2029589 RepID=UPI000EFC7652)

HSP 1 Score: 144 bits (363), Expect = 2.050e-34
Identity = 103/322 (31.99%), Postives = 164/322 (50.93%), Query Frame = 0

Query:  448 QLADLMQGLHRQSGERKFLTHAGEMALGAKVQRYRRLIEAQEKAEKEDGHRPPLAEVARSSAGLSQDEFAAVMQEGMEARQKLVVCNLALVVSLANKYKRSHFNCNCLQTLIQEGTIGLIRAAERYDPGKGFRFTTYAIWWIEARLRVSVQTEERMIHVPMWVKNKYNIVSRSIPKLRETLGREPTCEEIAAQVSIDTDSKVVLTPKRVKELRMWVAFHRKHESLDVPVEVGTRLPLDCSTIEHGVKAAEPSLESTSELEIQRDFLESCLAQDLSRIQRKILRMKVGLGGEKGKNRQEISRALKMPFNNVISEERKAFYKLR 769
            Q + L++   +  G    LTH  E+ LG KVQ+Y +L EA+    +  G  P  A  A S+A LS +E    ++ G  AR K+V  NL LVVS+A KY         +  LIQEGTIGL R  E++DPGKG+RF+TYA WWI   +  S+    R+I +P+ + +K   + ++  +L ++LGR  T +E+A+++S+            V++LR      R+  SLD+ +       L     + G+   E +  +     + ++ L   L++ LS  QR ++RM+ GL         ++  ++ +    V   ER A  KLR
Sbjct:    6 QSSSLVRSYLKNIGRFPLLTHEQEITLGKKVQKYMKLEEAKSDLVESMGDTPSPAVWAESTA-LSTEELQRAVEVGQRARAKMVRSNLRLVVSVAKKYAGHSLE---MMDLIQEGTIGLHRGVEKFDPGKGYRFSTYAYWWIRQAITRSISNNSRVIRLPIHIGDKLRKMRKAQRQLSQSLGRPATVKEVASEMSLS-----------VEKLRELQEQGRRPLSLDMKIGSEQNTELGALLEDEGILPEEYATRN-----LLKNDLSQLLSKTLSEQQRAVIRMRFGLDTGSKMTLHQVGDSMGISRERVRQVERSALRKLR 307

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig95.17003.1 vs. uniprot

BLAST of mRNA_C-linearis_contig95.17003.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25

ZOOM

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POSITION

0


Match Name	E-value	Identity	Description
D7G7N1_ECTSI	1.280e-200	58.40	RNA polymerase sigma factor, cyanobacterial RpoD-l...	[more]
A0A835Z811_9STRA	1.790e-38	33.23	RNA_pol_sigma70 domain-containing protein n=1 Tax=...	[more]
A0A1C0VBJ4_9CYAN	1.650e-35	32.72	RNA polymerase subunit sigma n=2 Tax=unclassified ...	[more]
UPI001A058DB0	1.650e-35	33.02	RNA polymerase sigma factor, RpoD/SigA family n=1 ...	[more]
B4VTM7_9CYAN	2.240e-35	32.41	RNA polymerase sigma factor, cyanobacterial RpoD-l...	[more]
Q2JIA4_SYNJB	4.900e-35	33.33	RNA polymerase sigma factor n=7 Tax=Synechococcus ...	[more]
A0A3M1T6H9_9CYAN	7.750e-35	32.32	RNA polymerase sigma factor, RpoD/SigA family n=1 ...	[more]
UPI0019DF3EF8	1.030e-34	33.23	RNA polymerase sigma factor, RpoD/SigA family n=1 ...	[more]
UPI0016822587	1.050e-34	32.32	RNA polymerase sigma factor, RpoD/SigA family n=1 ...	[more]
UPI000EFC7652	2.050e-34	31.99	RNA polymerase sigma factor, RpoD/SigA family n=1 ...	[more]

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Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_C-linearis_contig95.17003.1 ID=prot_C-linearis_contig95.17003.1|Name=mRNA_C-linearis_contig95.17003.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=785bp
MIQPRRQEMPSVSVVGGATPAAAAEPCPFAAASPRPRPLTARRVRPRSRP
PSPPSVDRSTSLVGRNLRRTPSRRAAVSLSTPAAPAPGMSMPLFLSLLAV
SIGAAPAAAAAAAAVAALSSATTTTTTTSSSWPRFSFFSATTTATTSGTT
PTGAFCFPARSRNRLVVSSEGCGGGGLRHSLTRRLRRRSAGAALSAAAAP
GRSSSLGRCLLQVGSSVGSSTAPPSFSLRGISRLGGAVHPRWVGGGEGGG
GGGHVGRAALLSRVRSMVGLGHTDDWGSGSTEDTGCRSQQDDGPGAAAGA
GPAADWDDGGWDNAELLSSFGFAGDSGDSHGSGAIGTWGDGAAEGTMASS
LSERDAARLEEVGIMVRELEVGAGGGAASVATGAGVGGAGTGTTPATPQP
RSPREEGDGGPVDGGHTAAERRADFVGGVATGNAHLRMTCGDTVFFGQLA
DLMQGLHRQSGERKFLTHAGEMALGAKVQRYRRLIEAQEKAEKEDGHRPP
LAEVARSSAGLSQDEFAAVMQEGMEARQKLVVCNLALVVSLANKYKRSHF
NCNCLQTLIQEGTIGLIRAAERYDPGKGFRFTTYAIWWIEARLRVSVQTE
ERMIHVPMWVKNKYNIVSRSIPKLRETLGREPTCEEIAAQVSIDTDSKVV
LTPKRVKELRMWVAFHRKHESLDVPVEVGTRLPLDCSTIEHGVKAAEPSL
ESTSELEIQRDFLESCLAQDLSRIQRKILRMKVGLGGEKGKNRQEISRAL
KMPFNNVISEERKAFYKLRGLQRDGEYPSFEELK*