mRNA_C-linearis_contig95.17003.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig95.17003.1 vs. uniprot
Match: D7G7N1_ECTSI (RNA polymerase sigma factor, cyanobacterial RpoD-like family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7N1_ECTSI) HSP 1 Score: 596 bits (1537), Expect = 7.460e-197 Identity = 452/774 (58.40%), Postives = 501/774 (64.73%), Query Frame = 3 Query: 438 TARRVRPRSRPPSPPSVDRSTSLVGRNLRRTPSRRAAVSLS----TPA------APAPGMSMP--LFLSLLAVSIGAAPXXXXXXXXXXXXXXXXXXXXXXXSSWPRFSFFSAXXXXXXXGTTPTGAFCFPARSRNRLVVSSEGCGGGGLRHSLTRRLRRRSAGAALSAAAAPGRSSSLGRCLLQVGSSVGSSTAPPSFSLR----GISRLGGAVHP---RWVGGGEGXXXXGH---VGRAALL---SRVRSMVGLGHTDDWGSXXXXXXXXXXXXXXXXGAAAGAGPAADWDDGGWDNAELLSSFGFAGDSGDSHGSGAIGTWGDGAAEGTMASSLSERDAARLEEVGIMVRELEV----GAXXXXXXXXXXXXXXXXXXXXTPATPQPRSPREEGDGGPVDGGHTAAERRADFVGGVATGNAHLRMTCGDTVFFGQLADLMQGLHRQSGERKFLTHAGEMALGAKVQRYRRLIEAQEKAEKEDGHRPPLAEVARSSAGLSQDEFAAVMQEGMEARQKLVVCNLALVVSLANKYKRSHFNCNCLQTLIQEGTIGLIRAAERYDPGKGFRFTTYAIWWIEARLRVSVQTEERMIHVPMWVKNKYNIVSRSIPKLRETLGREPTCEEIAAQVSIDTDSKVVLTPKRVKELRMWVAFHRKHESLDVPVEVGTRLPLDCSTIEHGVKAAEPSLESTSELEIQRDFLESCLAQDLSRIQRKILRMKVGLGGEKGKNRQEISRALKMPFNNVISEERKAFYKLRGLQRDGEYPSFEELK 2672
TARR+RPRS P PP V + GR R + A +S +PA PA G+SM L LSLLAVS XXXXXXXXXXXXXXXXXXXX S + +F SA P R + V S R + TRRLRRRS + S+AA S+ G S AP + R S GA P W+ G G + LL SR+RS +G TDDW + GAG +WDD + +LL+SFGF G + + D A SLSERDAARLEEVGIMV ELE G XXXXXXXXXXXXXXXXXXXX D + TA R+ D G A +A LRMTCGD VFF LA+LMQG+HRQSG RKFL H EM LG VQRYR LIEAQEKAEK+ G RP L +VARS AGLS++ FA+VMQ GMEARQKLVVCNLALVVSLANKYKRSHF+C CLQTLIQEGTIGLIRAAERYDP KGFRFTTYAIWWIEARLRVSVQTEER IHVPMWVKN+YN V RS+PKLR++LGREPT EE+AAQV IDT+SKVV+TPKRV+EL WV+FHRKHESLDVP+EV T +P DCSTIE GVKA +PS ESTSELEIQRDFLESCL QDLS+IQRKILRMKVGLGGEKGKNRQEISRALKMPFNNVISEERKAFYKLRGLQR G YPSFEELK
Sbjct: 26 TARRIRPRSAAPPPPGV--GSVGGGREACRQAYLKQAGGVSGGAFSPAWTGGVSIPASGLSMSTALLLSLLAVSGXXXXXXXXXXXXXXXXXXXXXXXXTAPSPFSSTAFCSAWP---------------PPPLRVCVGVPSA------WRPASTRRLRRRSNASNASSAAR---------------STAGRSRAPSALCSRRNSISCSWSTGAPPPPTPSWLWKGRRARSYGGGRCLSGGGLLPPRSRLRSRTQIGLTDDWSTGEASHRPED----------GGAGWNCEWDD----DVDLLTSFGFDGXXXXXXPADTDASTVD------DAPSLSERDAARLEEVGIMVEELEGNRGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNDADIKELMRTA--RKGDLAGR-AMDSARLRMTCGDPVFFAHLAELMQGVHRQSGGRKFLNHEEEMELGETVQRYRGLIEAQEKAEKDSGRRPRLRDVARS-AGLSEEAFASVMQAGMEARQKLVVCNLALVVSLANKYKRSHFDCGCLQTLIQEGTIGLIRAAERYDPSKGFRFTTYAIWWIEARLRVSVQTEERFIHVPMWVKNQYNTVHRSVPKLRKSLGREPTSEELAAQVEIDTNSKVVVTPKRVEELETWVSFHRKHESLDVPLEVSTPVPADCSTIEDGVKAPDPSTESTSELEIQRDFLESCLCQDLSKIQRKILRMKVGLGGEKGKNRQEISRALKMPFNNVISEERKAFYKLRGLQRGGGYPSFEELK 737
BLAST of mRNA_C-linearis_contig95.17003.1 vs. uniprot
Match: A0A835Z811_9STRA (RNA_pol_sigma70 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z811_9STRA) HSP 1 Score: 157 bits (398), Expect = 2.780e-38 Identity = 104/313 (33.23%), Postives = 169/313 (53.99%), Query Frame = 3 Query: 1710 KFLTHAGEMALGAKVQRYRRLIEAQEKAE---KEDGHRPPLAEVARSSAGLSQDEFAAVMQEGMEARQKLVVCNLALVVSLANKYKRSHFNCNCLQTLIQEGTIGLIRAAERYDPGKGFRFTTYAIWWIEARLRVSVQTEERMIHVPMWVKNKYNIVSRSIPKLRETLGREPTCEEIAAQVSID----TDSKVVLTPKRVKELRMWVAFHRKHESLDVPVEVGTRLPLDCSTIEHGVKAAEPSLESTSELEIQRDFLESCLAQDLSRIQRKILRMKVGLGGEKGKNRQEISRALKMPFNNVISEERKAFYKLR 2627
+ L+ E+ LGA VQ L+ A+ + + G P LAE A + S+ + A ++ G+ A++ +V CNL LVV+LA K++ L LIQEG +GL+RAAE+YDP +GFRF+TYA WW+ RL +SV++ R++ VP+ V +++ + R++ L LGR PT E+AA+ + + + P + + A HR + L T L + + + G A ++E E ++ R+ LE + LS+ +R I+RM+VGL + K E++ ++P ++ EER A KLR
Sbjct: 53 RLLSAEEELRLGALVQE---LVAAEARCAALAEALGREPTLAERAADAGAASEALYTARLRRGLWAKRAMVTCNLRLVVALAAKFQGQG---PPLADLIQEGAVGLVRAAEKYDPARGFRFSTYATWWVRQRLHLSVRSH-RLVRVPLRVHSQFEALRRAVRALAGELGRRPTEGELAARCGLTPARAAHVRAAMLPPESLDRELHFASHRSEQGLV------TMLDVTPAAADDGTSAGTATMEQALEWDLLREDLERAMRASLSQRERDIVRMRVGLDDGRAKTATELAAVFQLPAYVILREERNALTKLR 352
BLAST of mRNA_C-linearis_contig95.17003.1 vs. uniprot
Match: A0A1C0VBJ4_9CYAN (RNA polymerase subunit sigma n=2 Tax=unclassified Limnothrix TaxID=2632864 RepID=A0A1C0VBJ4_9CYAN) HSP 1 Score: 147 bits (371), Expect = 2.960e-35 Identity = 106/324 (32.72%), Postives = 171/324 (52.78%), Query Frame = 3 Query: 1671 DLMQGLHRQSGERKFLTHAGEMALGAKVQRYRRLIEAQEKAEKEDGHRPPLAEVARSSAGLSQDEFAAVMQEGMEARQKLVVCNLALVVSLANKYKRSHFNCNCLQTLIQEGTIGLIRAAERYDPGKGFRFTTYAIWWIEARLRVSVQTEERMIHVPMWVKNKYNIVSRSIPKLRETLGREPTCEEIAAQVSIDTDSKVVLTPKRVKELRMWVAFHRKHESLDVPVEVGTRLPLDCSTIEHGVKAAEPSLESTSELEIQRDFLESCLAQDLSRIQRKILRMKVGLGGEKGKNRQEISRALKMPFNNVISEERKAFYKLRGLQRD 2642
DL++ R+ G LTH E+ LG +VQR L E ++K G+ P LAE A ++ GLS DE A ++EG A++K+V NL LVVS+A KY + + + L LIQEGTIG+ R E++DP KG+RF+TYA WWI + ++ + R I +P+ + K N + ++ L + LGR T E+ ++ L+PK++++ R + L + + VG + + ++ PS E + R +E+ +A DL+ QR++L ++ GL + +I L++ V ER+A KLR + D
Sbjct: 9 DLVRAYLREIGRVPLLTHEQEIVLGKQVQRLNVLQEEKDKLTLRLGYEPGLAEWA-AAIGLSLDELKAAIREGDRAKRKMVEANLRLVVSVAKKYIKRNVD---LLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRTLSQQLGRSATIAELGDEIG--------LSPKQIRDY-----LERARQPLSLDLRVGDNQDTELGEL---LEDEGPSPEEFATQSSLRGDIETIMA-DLTPQQREVLSLRFGLSDGQALTLAKIGDRLQISRERVRQIEREALTKLRKHKAD 311
BLAST of mRNA_C-linearis_contig95.17003.1 vs. uniprot
Match: UPI001A058DB0 (RNA polymerase sigma factor, RpoD/SigA family n=1 Tax=Oscillatoriaceae cyanobacterium M7585_C2015_266 TaxID=2774341 RepID=UPI001A058DB0) HSP 1 Score: 147 bits (371), Expect = 2.960e-35 Identity = 107/324 (33.02%), Postives = 170/324 (52.47%), Query Frame = 3 Query: 1671 DLMQGLHRQSGERKFLTHAGEMALGAKVQRYRRLIEAQEKAEKEDGHRPPLAEVARSSAGLSQDEFAAVMQEGMEARQKLVVCNLALVVSLANKYKRSHFNCNCLQTLIQEGTIGLIRAAERYDPGKGFRFTTYAIWWIEARLRVSVQTEERMIHVPMWVKNKYNIVSRSIPKLRETLGREPTCEEIAAQVSIDTDSKVVLTPKRVKELRMWVAFHRKHESLDVPVEVGTRLPLDCSTIEHGVKAAEPSLESTSELEIQRDFLESCLAQDLSRIQRKILRMKVGLGGEKGKNRQEISRALKMPFNNVISEERKAFYKLRGLQRD 2642
D+++ R+ G LTH E+ G +VQR L E +EK ++ G+ P LAE A+ AG+S DE + EG A++++V NL LVVS+A KY + + + L LIQEGTIG+ R E++DP KG+RF+TYA WWI + ++ + R I +P+ + K N + ++ +L + LGR T E+A + LTPK+++E R + L + + VG + + ++ PS E + R LE+ +A+ L+ QR++L M+ GL + +I L + V ER+A KLR + D
Sbjct: 9 DIVRAYLREIGRVPLLTHEQEIIYGKQVQRLTALQELKEKLAEKLGYEPSLAEWAKE-AGMSTDELQRAIAEGELAKRRMVEANLRLVVSVAKKYIKRNVD---LLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLAQNLGRAATVAELAEALE--------LTPKQIREY-----LERSRQPLSLDLRVGDNQDTELGEL---LEDTGPSPEDFAINSSLRADLENIMAE-LTPQQRQVLSMRFGLEDGQALTLSKIGDRLNISRERVRQIEREALSKLRKRKAD 311
BLAST of mRNA_C-linearis_contig95.17003.1 vs. uniprot
Match: B4VTM7_9CYAN (RNA polymerase sigma factor, cyanobacterial RpoD-like family n=2 Tax=Coleofasciculus chthonoplastes TaxID=64178 RepID=B4VTM7_9CYAN) HSP 1 Score: 147 bits (371), Expect = 4.050e-35 Identity = 105/324 (32.41%), Postives = 173/324 (53.40%), Query Frame = 3 Query: 1671 DLMQGLHRQSGERKFLTHAGEMALGAKVQRYRRLIEAQEKAEKEDGHRPPLAEVARSSAGLSQDEFAAVMQEGMEARQKLVVCNLALVVSLANKYKRSHFNCNCLQTLIQEGTIGLIRAAERYDPGKGFRFTTYAIWWIEARLRVSVQTEERMIHVPMWVKNKYNIVSRSIPKLRETLGREPTCEEIAAQVSIDTDSKVVLTPKRVKELRMWVAFHRKHESLDVPVEVGTRLPLDCSTIEHGVKAAEPSLESTSELEIQRDFLESCLAQDLSRIQRKILRMKVGLGGEKGKNRQEISRALKMPFNNVISEERKAFYKLRGLQRD 2642
DL++ ++ G LTH E+ G +VQR L + +E ++ G+ P L E A++S+ LS+ E + ++ G A++K+V NL LVVS+A KY + + + L LIQEGTIG+ R E++DP KG+RF+TYA WWI + ++ + R I +P+ + K N + ++ +L +TLGR T E+A ++ LTPK+V+E + + L + + VG + + ++ + PS E + + LE +A DL+ QR++L ++ GL + +I LK+ V ER+A KLR Q D
Sbjct: 21 DLVRTYLQEIGRVPLLTHEQEILYGKQVQRLNALEQTKESLFEQLGYEPTLCEWAKASS-LSEAELQSCIRAGQTAKRKMVEANLRLVVSVAKKYIKRNVD---LLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQTLGRAATISELATELD--------LTPKQVREY-----LEKARQPLSLDLRVGDNQDTELGEL---LEDSGPSPEDFATYSAMQVDLEKLMA-DLTEQQREVLMLRFGLVDGQPMTLAKIGDQLKISRERVRQIEREALSKLRKRQAD 323
BLAST of mRNA_C-linearis_contig95.17003.1 vs. uniprot
Match: Q2JIA4_SYNJB (RNA polymerase sigma factor n=7 Tax=Synechococcus TaxID=1129 RepID=Q2JIA4_SYNJB) HSP 1 Score: 147 bits (371), Expect = 9.010e-35 Identity = 110/330 (33.33%), Postives = 178/330 (53.94%), Query Frame = 3 Query: 1671 DLMQGLHRQSGERKFLTHAGEMALGAKVQRYRRLIEAQEKAEKEDGHRPPLAE-VARSS-----AGLSQDEFAAVMQEGMEARQKLVVCNLALVVSLANKYKRSHFNCNCLQTLIQEGTIGLIRAAERYDPGKGFRFTTYAIWWIEARLRVSVQTEERMIHVPMWVKNKYNIVSRSIPKLRETLGREPTCEEIAAQVSIDTDSKVVLTPKRVKELRMWVAFHRKHESLDVPVEVGTRLPLDCSTIEHGVKAAEPSLESTSELE-IQRDFLESCLAQDLSRIQRKILRMKVGLGGEKGKNRQEISRALKMPFNNVISEERKAFYKLRGLQR 2639
DL++ ++ G L E+AL KVQ Y +L++ + + +KE G P LAE VA+++ A L+ ++ + + G A++ ++ NL LVVS+A KY+ L LIQEGT+GL RA E++DP KG+RF+TYA WWI + ++ T+ R I +P+ + K N + ++ KL + GR PT E+IA+++ +TP +V+EL + R S+ + +VG + + ++ + S E T E + RD + L DL+ +R ++RM+ GLG + + EI RAL + V E KA KLR +R
Sbjct: 46 DLVRLYLQEIGRVPLLGRDEEVALAQKVQDYMKLLDLRLRLQKELGRDPTLAEWVAKANQYPEWAQLTPEKLQQIQRIGKRAKEHMIKANLRLVVSVAKKYQNRGLE---LLDLIQEGTLGLERAVEKFDPKKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKLSQEKGRTPTIEDIASELE--------MTPPQVRELLV-----RVPRSVSLETKVGKDKDTELGDL---LETDDISPEETMMREALHRDLQQ--LLSDLTSRERDVIRMRFGLGDGRTYSLAEIGRALDLSRERVRQIEAKALQKLRQPKR 354
BLAST of mRNA_C-linearis_contig95.17003.1 vs. uniprot
Match: A0A3M1T6H9_9CYAN (RNA polymerase sigma factor, RpoD/SigA family n=1 Tax=Cyanobacteria bacterium J055 TaxID=2420338 RepID=A0A3M1T6H9_9CYAN) HSP 1 Score: 145 bits (366), Expect = 1.360e-34 Identity = 106/328 (32.32%), Postives = 174/328 (53.05%), Query Frame = 3 Query: 1671 DLMQGLHRQSGERKFLTHAGEMALGAKVQRYRRLIEAQEKAEKEDGHRPPLAEVARSSAGLSQDEFAAVMQEGMEARQKLVVCNLALVVSLANKYKRSHFNCNCLQTLIQEGTIGLIRAAERYDPGKGFRFTTYAIWWIEARLRVSVQTEERMIHVPMWVKNKYNIVSRSIPKLRETLGREPTCEEIAAQVSIDTDSKVVLTPKRVKELRMWVAFHRKHESLDVPVEVGTRLPLDCSTI--EHGVKAAEPSLEST--SELEIQRDFLESCLAQDLSRIQRKILRMKVGLGGEKGKNRQEISRALKMPFNNVISEERKAFYKLRGLQRD 2642
DL++ R+ G LTH E+ LG +VQR+ L E +E+ E +R P ++AGLSQ E V+ G A++K+V NL LVVS+A KY + + + L LIQEGTIG+ R E++DP KG+RF+TYA WWI + ++ + R I +P+ + K N + + +L + LGR T E+AA++ LTP++++E R + L + + VG + + + + G E +++S+ +ELE+ L +DL+ Q+++L ++ GL + +I L++ V ER+A KLR + D
Sbjct: 9 DLVRTYLREIGRVPLLTHEQEILLGKQVQRFAALKEIKEQLA-EKLNREPTENEWSNAAGLSQQELQKVIDSGEVAKRKMVEANLRLVVSVAKKYLKRNVD---LLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKVQRRLTQQLGRTATTAELAAEME--------LTPRQIREY-----LERARQPLSLDLRVGDNQDTELADLLEDEGPSPEEFAVQSSLRNELEV--------LMEDLTPQQKEVLSLRFGLQDGQSMTLAKIGARLQISRERVRQIEREALTKLRKRKAD 311
BLAST of mRNA_C-linearis_contig95.17003.1 vs. uniprot
Match: UPI0016822587 (RNA polymerase sigma factor, RpoD/SigA family n=1 Tax=Microcoleus sp. FACHB-831 TaxID=2692827 RepID=UPI0016822587) HSP 1 Score: 145 bits (366), Expect = 1.360e-34 Identity = 106/328 (32.32%), Postives = 168/328 (51.22%), Query Frame = 3 Query: 1671 DLMQGLHRQSGERKFLTHAGEMALGAKVQRYRRLIEAQEKAEKEDGHRPPLAEVARSSAGLSQDEFAAVMQEGMEARQKLVVCNLALVVSLANKYKRSHFNCNCLQTLIQEGTIGLIRAAERYDPGKGFRFTTYAIWWIEARLRVSVQTEERMIHVPMWVKNKYNIVSRSIPKLRETLGREPTCEEIAAQVSIDTDSKVVLTPKRVKELRMWVAFHRKHESLDVPVEVGTRLPLDCSTIEHGVKAAEPSLESTSELEIQRDFLESCLAQDLSRIQRKILRMKVGLGGEKGKNRQEISRALKMPFNNVISEERKAFYKLRGLQRD-GEY 2651
DL++ R+ G LTH E+ G +VQR L E + ++ G+ P L + ARS AG+ + E + G A++++V NL LVVS+A KY + + + L LIQEGTIG+ R E++DP KG+RF+TYA WWI + ++ + R I +P+ + K N + ++ L + LGR T E+AA++ LTPK+V+E R + L + + VG + + + + S L++ LE +A DL+ QR++L ++ GL + +I L + V ER+A KLR + D GEY
Sbjct: 9 DLVRTYLREIGRVPLLTHEQEIVFGKQVQRLTNLQEVKNSLQEVLGYEPSLTDWARS-AGIEETELNNAIAAGETAKRRMVEANLRLVVSVAKKYIKRNVD---LLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRYLAQQLGRAATAAELAAELE--------LTPKQVREY-----LERARQPLSLDLRVGDNQDTELGELLEDTGPSPEEFATQSSLQVD---LEKIMA-DLTPQQREVLALRFGLADGQALTLAKIGARLNISRERVRQIEREALSKLRKRKADMGEY 315
BLAST of mRNA_C-linearis_contig95.17003.1 vs. uniprot
Match: UPI0019DF3EF8 (RNA polymerase sigma factor, RpoD/SigA family n=1 Tax=Leptolyngbyaceae cyanobacterium T60_A2020_046 TaxID=2747813 RepID=UPI0019DF3EF8) HSP 1 Score: 145 bits (365), Expect = 1.800e-34 Identity = 109/328 (33.23%), Postives = 171/328 (52.13%), Query Frame = 3 Query: 1662 QLADLMQGLHRQSGERKFLTHAGEMALGAKVQRYRRLIEAQEKAEKEDGHRPPLAEVARSSAGLSQDEFAAVMQEGMEARQKLVVCNLALVVSLANKYKRSHFNCNCLQTLIQEGTIGLIRAAERYDPGKGFRFTTYAIWWIEARLRVSVQTEERMIHVPMWVKNKYNIVSRSIPKLRETLGREPTCEEIAAQVSIDTDSKVVLTPKRVKELRMWVAFHRKHESLDVPVEVGTRLPLDCSTIEHGVKAAEPSLES-TSELEIQRDFLESCLAQDLSRIQRKILRMKVGLGGEKGKNRQEISRALKMPFNNVISEERKAFYKLRGLQRD 2642
Q DL++ ++ G LTH E+ LG VQR L +E E++ G P AE A +S GLS AA ++EG +A++K+V NL LVVS+A KY + + + L LIQEGTIG+ R E++DP KG+RF+TYA WWI + ++ + R I +P+ + K N + R+ +L + GR T E+AA++ L+PK V+E + + L + + VG + S + ++ PS E ++ ++RD L DL+ QR++L ++ GL + +I L + V ER+A KLR + D
Sbjct: 5 QNTDLVRTYLKEIGRVPLLTHEEEIVLGKCVQRLTELERHREALEEKLGRSPTQAEWAEAS-GLSTQALAAAIREGEQAKRKMVEANLRLVVSVAKKYIKRNVD---LLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKRAQRQLSQKHGRTATVSELAAELE--------LSPKLVREY-----LEKSRQPLSLDLRVGDNQDTELSDL---LEDDGPSPEEFATQAALRRDL--DKLMVDLTPQQRQVLNLRFGLDDGQTMTLAKIGEMLSISRERVRQIEREALTKLRKHRSD 310
BLAST of mRNA_C-linearis_contig95.17003.1 vs. uniprot
Match: UPI000EFC7652 (RNA polymerase sigma factor, RpoD/SigA family n=1 Tax=Leptolyngbya sp. BC1307 TaxID=2029589 RepID=UPI000EFC7652) HSP 1 Score: 144 bits (364), Expect = 2.630e-34 Identity = 103/322 (31.99%), Postives = 164/322 (50.93%), Query Frame = 3 Query: 1662 QLADLMQGLHRQSGERKFLTHAGEMALGAKVQRYRRLIEAQEKAEKEDGHRPPLAEVARSSAGLSQDEFAAVMQEGMEARQKLVVCNLALVVSLANKYKRSHFNCNCLQTLIQEGTIGLIRAAERYDPGKGFRFTTYAIWWIEARLRVSVQTEERMIHVPMWVKNKYNIVSRSIPKLRETLGREPTCEEIAAQVSIDTDSKVVLTPKRVKELRMWVAFHRKHESLDVPVEVGTRLPLDCSTIEHGVKAAEPSLESTSELEIQRDFLESCLAQDLSRIQRKILRMKVGLGGEKGKNRQEISRALKMPFNNVISEERKAFYKLR 2627
Q + L++ + G LTH E+ LG KVQ+Y +L EA+ + G P A A S+A LS +E ++ G AR K+V NL LVVS+A KY + LIQEGTIGL R E++DPGKG+RF+TYA WWI + S+ R+I +P+ + +K + ++ +L ++LGR T +E+A+++S+ V++LR R+ SLD+ + L + G+ E + + + ++ L L++ LS QR ++RM+ GL ++ ++ + V ER A KLR
Sbjct: 6 QSSSLVRSYLKNIGRFPLLTHEQEITLGKKVQKYMKLEEAKSDLVESMGDTPSPAVWAESTA-LSTEELQRAVEVGQRARAKMVRSNLRLVVSVAKKYAGHSLE---MMDLIQEGTIGLHRGVEKFDPGKGYRFSTYAYWWIRQAITRSISNNSRVIRLPIHIGDKLRKMRKAQRQLSQSLGRPATVKEVASEMSLS-----------VEKLRELQEQGRRPLSLDMKIGSEQNTELGALLEDEGILPEEYATRN-----LLKNDLSQLLSKTLSEQQRAVIRMRFGLDTGSKMTLHQVGDSMGISRERVRQVERSALRKLR 307 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig95.17003.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig95.17003.1 >prot_C-linearis_contig95.17003.1 ID=prot_C-linearis_contig95.17003.1|Name=mRNA_C-linearis_contig95.17003.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=785bp MIQPRRQEMPSVSVVGGATPAAAAEPCPFAAASPRPRPLTARRVRPRSRPback to top mRNA from alignment at C-linearis_contig95:506785..513824+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig95.17003.1 ID=mRNA_C-linearis_contig95.17003.1|Name=mRNA_C-linearis_contig95.17003.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=7040bp|location=Sequence derived from alignment at C-linearis_contig95:506785..513824+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig95:506785..513824+ >mRNA_C-linearis_contig95.17003.1 ID=mRNA_C-linearis_contig95.17003.1|Name=mRNA_C-linearis_contig95.17003.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=4710bp|location=Sequence derived from alignment at C-linearis_contig95:506785..513824+ (Chordaria linearis ClinC8C monoicous)back to top |