prot_C-linearis_contig95.16976.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig95.16976.1
Unique Nameprot_C-linearis_contig95.16976.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length196
Homology
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BLAST of mRNA_C-linearis_contig95.16976.1 vs. uniprot
Match: D7FLY7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLY7_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 3.930e-16
Identity = 41/74 (55.41%), Postives = 52/74 (70.27%), Query Frame = 0 
Query:  123 DETKTTECCGEGAQ-PTERDIVMFKEAKRREHFEGMVPGSLTPYPWRSMYYGRGRPRCARRLSSLSSSGYNMAG 195
            D+ +TTE   E +  PT +D+ M K A RREH + MVPG+LTP PWRS++YGRGRP       SLSSSG++MAG
Sbjct:   63 DDGQTTEEAEERSPTPTRQDVAMLKAAMRREHLQRMVPGTLTPDPWRSIFYGRGRPTDVGPCRSLSSSGHSMAG 136
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig95.16976.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FLY7_ECTSI3.930e-1655.41Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..17
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 18..195
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..13
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..17
score: 0.609
NoneNo IPR availableTMHMMTMhelixcoord: 4..21

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig95contigC-linearis_contig95:261109..262609 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig95.16976.1mRNA_C-linearis_contig95.16976.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig95 261033..263122 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig95.16976.1 ID=prot_C-linearis_contig95.16976.1|Name=mRNA_C-linearis_contig95.16976.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=196bp
MLDAGVFVAGFALVAFAWNLGRMNNVMKKCELEGCKTGCKSNEGCQSNDP
RGVENLEDWNWNVQCSENADPVARCVRNSHDSRVSINDPDGDEWNTARSA
LCVRNVQEVDFGAPSNDADGDGDETKTTECCGEGAQPTERDIVMFKEAKR
REHFEGMVPGSLTPYPWRSMYYGRGRPRCARRLSSLSSSGYNMAG*
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