Homology
BLAST of mRNA_C-linearis_contig95.16976.1 vs. uniprot
Match:
D7FLY7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLY7_ECTSI)
HSP 1 Score: 94.0 bits (232), Expect = 1.450e-19
Identity = 65/195 (33.33%), Postives = 84/195 (43.08%), Query Frame = 1
Query: 514 MLDAGVFVAGFALVAFAWNLGRMNNVMKKCELEGCKTGCKSNEGCQSNDPRGVENLEDWNWNVQCSENADPVARCVRNSHDSRVSINDPDGDEWNTARSALCVRNVQEVDFGAPSNDADGDGDETKTTECCGEGAQPTERDIVMFKEAKRREHFEGMVPGSLTPYPWRSMYYGRGRPRCARRLSSLSSSGYNMAG 1098
+LDAGV V ALV WNLGRMNNVMK+ E N C E P + + + + D+ T +E + +P+ PT +D+ M K A RREH + MVPG+LTP PWRS++YGRGRP SLSSSG++MAG
Sbjct: 2 ILDAGVVVGTCALVVLVWNLGRMNNVMKELE------------------------------NQCCEEERTPDTFDIEAKGGGELVLVKDEEDDGQT---------TEEAEERSPT---------------------PTRQDVAMLKAAMRREHLQRMVPGTLTPDPWRSIFYGRGRPTDVGPCRSLSSSGHSMAG 136
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig95.16976.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 1.45e-19 / Id = 33.33 Sequence D7FLY7_ECTSI
Match Name E-value Identity Description
D7FLY7_ECTSI 1.450e-19 33.33 Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category signal peptide
Ec32 ortholog description expressed unknown protein
Ec32 ortholog Ec-22_000210.1
Exons 2
Model size 1177
Cds size 588
Stop 1
Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622930813.3058617-UTR-C-linearis_contig95:261032..261108 1622930813.3058617-UTR-C-linearis_contig95:261032..261108 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig95 261033..261108 -
1690881263.206071-UTR-C-linearis_contig95:261032..261108 1690881263.206071-UTR-C-linearis_contig95:261032..261108 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig95 261033..261108 -
1622930813.346039-UTR-C-linearis_contig95:262609..263122 1622930813.346039-UTR-C-linearis_contig95:262609..263122 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig95 262610..263122 -
1690881263.2575743-UTR-C-linearis_contig95:262609..263122 1690881263.2575743-UTR-C-linearis_contig95:262609..263122 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig95 262610..263122 -
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622930813.3220818-CDS-C-linearis_contig95:261108..261609 1622930813.3220818-CDS-C-linearis_contig95:261108..261609 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig95 261109..261609 -
1690881263.2221591-CDS-C-linearis_contig95:261108..261609 1690881263.2221591-CDS-C-linearis_contig95:261108..261609 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig95 261109..261609 -
1622930813.3332832-CDS-C-linearis_contig95:262522..262609 1622930813.3332832-CDS-C-linearis_contig95:262522..262609 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig95 262523..262609 -
1690881263.2393558-CDS-C-linearis_contig95:262522..262609 1690881263.2393558-CDS-C-linearis_contig95:262522..262609 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig95 262523..262609 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig95.16976.1
>prot_C-linearis_contig95.16976.1 ID=prot_C-linearis_contig95.16976.1|Name=mRNA_C-linearis_contig95.16976.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=196bp
MLDAGVFVAGFALVAFAWNLGRMNNVMKKCELEGCKTGCKSNEGCQSNDP RGVENLEDWNWNVQCSENADPVARCVRNSHDSRVSINDPDGDEWNTARSA LCVRNVQEVDFGAPSNDADGDGDETKTTECCGEGAQPTERDIVMFKEAKR REHFEGMVPGSLTPYPWRSMYYGRGRPRCARRLSSLSSSGYNMAG* back to top mRNA from alignment at C-linearis_contig95:261033..263122-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig95.16976.1 ID=mRNA_C-linearis_contig95.16976.1|Name=mRNA_C-linearis_contig95.16976.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2090bp|location=Sequence derived from alignment at C-linearis_contig95:261033..263122- (Chordaria linearis ClinC8C monoicous)CGGAAGAGAGCTGACGGAAGATGGAAGCCCTGCCGAGAGAAAACCAAGGG
ATGGAATATAACTTCTGTCGGGGTTGCCCCCTTTGCACTGTAATGGAGCT
TGAATGCGAGGGTCTTACGCTGGTGCCGGGGCCCTTTGCGGGTTGGCGGT
TGAGACTCCGAGTCGTCCCAATGTCAGTACGACAAGGAGAGAGATGACGC
CATGACGCACGCGACAGGGGGCTGCGTACACCCAAAGACGGGTGCTCGGA
TCATTCCTTCTGTACGTGCAACGTTCCGCAGGCGGAAAGGGAAGCGATAT
GACATCGACGGGGCCGGTGTGCGTGGGGGCAAAGCGTGCTGTGCACCAGC
CCCACCGAGTCATTCCCAAACTCGTTCCTCGTTCCAGCTACAACAGGGAT
GGGTTAGCTGCAACTTCTCGCGAATTCAAGCGTTTTCAATGAGGTGATCG
TGTGCCAAGACGGCACAACTAGAAAAGGAAAGAGAGACGGAGAGGGCAGG
ACCAGGACACAAG ATGCTTGACGCTGGAGTCTTTGTGGCGGGATTCGCCC
TCGTGGCGTTTGCGTGGAACTTAGGCCGGATGAACAACGTGATGAAAAAG
GTTGGTTTCTGTCAGAACGAGAGAAAGAGAAATACTGCGGCGCAAACGGC
AGCTACCCGTTGGGCAGTAGGTAGGCGAGGATGCTCGGCGCACGCAGTCG
TTGCCTACTGCTGTGTACCTTTCGCCACCTCTATTTGGATGTAGCTAGAG
TCGTGCCGGCGTGTTGCACATACCATCGGAGAGGATATTGATTTCAGGGG
GGTGGGCTAACTTGTGCGGCGGCACGTGGCTGGTGCCGCAGTCGTTCATC
GCCGATCGCACATGAGTCCACATCCTTGCAGAAATGATAAATGGATTCTC
TTGCGGCGGATGTGTGCTTAGATTTGTTCCGGCGACGGAGGCCGAGCTTC
CCGTCGGGCGACACCCGACCTGCAGAAAAGCGTCATCGTTGAGAAACGCC
GCCTGCGAGCTAGCGAAACCTTTGAGAAATTCAGAAATCGGGTTAATGGC
AGCGATTGCAACGTCGCCTATGTTGAACCTTCGCCTCTGAGAAAAAAACA
TGCCAATATTCTGCACCTACTGCAGTCTATACCTGGTATTCTCCAAGGCT
TCTCCCGCCAGCGTTTGCCGATCTCCAAGCATGATTGTCGAGACACAAAT
GCGTGGCGAGGCGAATGACGCTTGATTCGTAGCATTCCTCTTCTCAGTTG
TCTCAGTCTGTTGCCGCCGTCGAGGCTGAGAAAATATTAATTCTCGCTGA
CGATCCCCTAGGCATTAGGCCCTTGTTCCGGTGGGTACTTCAGCCAGTTG
GCTTGTCTTCGCAGTCGTTAAGTTGTGGTTTCTGAATATCCTGCTGCTTT
CTCTCATGCCGCCGTCCCTCCTCTCCTTATTCCAAACATCTCTCCCGCTC
TTTCCGTACTCGTCCTTCTCTTTTTCCGTTCTGTCGCTGTGACCTTTCGA
TCATCATCGACAGTGTGAGCTTGAGGGCTGCAAGACGGGCTGCAAGAGCA
ACGAGGGCTGTCAGAGCAACGACCCCCGCGGCGTGGAGAACCTCGAGGAC
TGGAACTGGAACGTTCAGTGCTCTGAAAACGCGGACCCTGTTGCTCGCTG
CGTGCGCAACTCTCACGACTCAAGGGTGTCTATAAACGATCCGGATGGCG
ACGAGTGGAACACAGCAAGAAGCGCCCTCTGCGTGCGCAACGTACAGGAG
GTCGACTTCGGAGCACCTTCAAACGACGCGGATGGAGACGGAGACGAAAC
AAAAACGACGGAATGCTGCGGGGAAGGAGCGCAGCCAACCGAACGCGACA
TCGTGATGTTCAAGGAAGCTAAGCGTCGTGAGCACTTCGAAGGCATGGTG
CCCGGCAGCTTGACCCCCTACCCGTGGCGCAGCATGTACTACGGACGCGG
TCGTCCTAGGTGCGCCAGGCGGCTCAGCAGCCTCTCCAGCAGCGGCTACA
ACATGGCCGGTTAG GCTGGACAATGACGGCATGCGCATATTCGAGTAGGA
AAAAACACGCCGTTCACCGGTTGGCCAGGGTCCATCTCGG back to top Coding sequence (CDS) from alignment at C-linearis_contig95:261033..263122-
>mRNA_C-linearis_contig95.16976.1 ID=mRNA_C-linearis_contig95.16976.1|Name=mRNA_C-linearis_contig95.16976.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1176bp|location=Sequence derived from alignment at C-linearis_contig95:261033..263122- (Chordaria linearis ClinC8C monoicous) ATGCTTGACGCTGGAGTCTTTGTGGCGGGATTCGCCCTCGTGGCGTTTGC GTGGAACTTAGGCCGGATGAACAACGTGATGAAAAAGATGCTTGACGCTG GAGTCTTTGTGGCGGGATTCGCCCTCGTGGCGTTTGCGTGGAACTTAGGC CGGATGAACAACGTGATGAAAAAGTGTGAGCTTGAGGGCTGCAAGACGGG CTGCAAGAGCAACGAGGGCTGTCAGAGCAACGACCCCCGCGGCGTGGAGA ACCTCGAGGACTGGAACTGGAACGTTCAGTGCTCTGAAAACGCGGACCCT GTTGCTCGCTGCGTGCGCAACTCTCACGACTCAAGGGTGTCTATAAACGA TCCGGATGGCGACGAGTGGAACACAGCAAGAAGCGCCCTCTGCGTGCGCA ACGTACAGGAGGTCGACTTCGGAGCACCTTCAAACGACGCGGATGGAGAC GGAGACGAAACAAAAACGACGGAATGCTGCGGGGAAGGAGCGCAGCCAAC CGAACGCGACATCGTGATGTTCAAGGAAGCTAAGCGTCGTGAGCACTTCG AAGGCATGGTGCCCGGCAGCTTGACCCCCTACCCGTGGCGCAGCATGTAC TACGGACGCGGTCGTCCTAGGTGCGCCAGGCGGCTCAGCAGCCTCTCCAG CAGCGGCTACAACATGGCCGGTTAGTGTGAGCTTGAGGGCTGCAAGACGG GCTGCAAGAGCAACGAGGGCTGTCAGAGCAACGACCCCCGCGGCGTGGAG AACCTCGAGGACTGGAACTGGAACGTTCAGTGCTCTGAAAACGCGGACCC TGTTGCTCGCTGCGTGCGCAACTCTCACGACTCAAGGGTGTCTATAAACG ATCCGGATGGCGACGAGTGGAACACAGCAAGAAGCGCCCTCTGCGTGCGC AACGTACAGGAGGTCGACTTCGGAGCACCTTCAAACGACGCGGATGGAGA CGGAGACGAAACAAAAACGACGGAATGCTGCGGGGAAGGAGCGCAGCCAA CCGAACGCGACATCGTGATGTTCAAGGAAGCTAAGCGTCGTGAGCACTTC GAAGGCATGGTGCCCGGCAGCTTGACCCCCTACCCGTGGCGCAGCATGTA CTACGGACGCGGTCGTCCTAGGTGCGCCAGGCGGCTCAGCAGCCTCTCCA GCAGCGGCTACAACATGGCCGGTTAG back to top