prot_C-linearis_contig95.16972.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig95.16972.1
Unique Nameprot_C-linearis_contig95.16972.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length341
Homology
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BLAST of mRNA_C-linearis_contig95.16972.1 vs. uniprot
Match: D7FNE8_ECTSI (Novel protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNE8_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 4.570e-21
Identity = 92/227 (40.53%), Postives = 110/227 (48.46%), Query Frame = 0 
Query:   66 WEIFGEGISGAFLQAQQGLEGLSLPGVGDAFWLTFGQMDVPELPALPELRLFGLSWPPPPSTTXXXXXXXXXXXXXXXXXXITPSATPPATPTPVGGAPAAAXXXXXXXXXXXXXXXXAEDASTATLVERRAGGKKQGLSGRISSMWRRKRPXXXXXXXXXXXXXXXSVPTTNLPGAEAAXXXXXXXXXXXXXXXXXXXXXXXAGRWRKVGALAGLRRRLPLLGRSG 292
            WE  GEG+SGAFL AQQGLE L+L GVGDAFWL FGQMDVPELP L +LR+FGLSWPP        XXXXXXXXXX     + P++  PAT                             ++ T T+       K +GL+ R+   WRR RP               +V + +  G +                         AGRWRKVGALAGLR+RL L G  G
Sbjct:   75 WEGIGEGLSGAFLHAQQGLEELNLLGVGDAFWLNFGQMDVPELPTLSDLRIFGLSWPP--------XXXXXXXXXXAREPKLQPASAAPATTA----------------NGETEGLSGGGESVTGTITGEI---KTRGLTRRLPP-WRRGRPKTDGGVGRTPAAAAAAVDSASEEGQDRPITK--------------------AGRWRKVGALAGLRKRLSLYGTHG 253
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig95.16972.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FNE8_ECTSI4.570e-2140.53Novel protein n=1 Tax=Ectocarpus siliculosus TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig95contigC-linearis_contig95:210279..213301 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig95.16972.1mRNA_C-linearis_contig95.16972.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig95 210279..213301 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig95.16972.1 ID=prot_C-linearis_contig95.16972.1|Name=mRNA_C-linearis_contig95.16972.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=341bp
MSAAGAAAARRRVLDSSGMARHNIGQQGDPTLDQQSPLDIDGSKGSVAEG
GGGAPDGPPREGLGSWEIFGEGISGAFLQAQQGLEGLSLPGVGDAFWLTF
GQMDVPELPALPELRLFGLSWPPPPSTTPKPATKPKKTTKRTKITKITPS
ATPPATPTPVGGAPAAATVAAAGRATVTTAAGNAEDASTATLVERRAGGK
KQGLSGRISSMWRRKRPAVAAAAMAGGGEGSGSVPTTNLPGAEAAVDGGG
GGGRTTRTTSRGGEQKAAAGRWRKVGALAGLRRRLPLLGRSGGGGAASTS
SGGGGNVEGVGGPDPLGDASSAVLPSIERQEKKKEEFEEEE
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