Homology
BLAST of mRNA_C-linearis_contig95.16972.1 vs. uniprot
Match:
D7FNE8_ECTSI (Novel protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNE8_ECTSI)
HSP 1 Score: 105 bits (261), Expect = 4.570e-21
Identity = 92/227 (40.53%), Postives = 110/227 (48.46%), Query Frame = 1
Query: 196 WEIFGEGISGAFLQAQQGLEGLSLPGVGDAFWLTFGQMDVPELPALPELRLFGLSWPPPPSTTXXXXXXXXXXXXXXXXXXITPSATPPATPTPVGGAPAAAXXXXXXXXXXXXXXXXAEDASTATLVERRAGGKKQGLSGRISSMWRRKRPXXXXXXXXXXXXXXXSVPTTNLPGAEAAXXXXXXXXXXXXXXXXXXXXXXXAGRWRKVGALAGLRRRLPLLGRSG 876
WE GEG+SGAFL AQQGLE L+L GVGDAFWL FGQMDVPELP L +LR+FGLSWPP XXXXXXXXXX + P++ PAT ++ T T+ K +GL+ R+ WRR RP +V + + G + AGRWRKVGALAGLR+RL L G G
Sbjct: 75 WEGIGEGLSGAFLHAQQGLEELNLLGVGDAFWLNFGQMDVPELPTLSDLRIFGLSWPP--------XXXXXXXXXXAREPKLQPASAAPATTA----------------NGETEGLSGGGESVTGTITGEI---KTRGLTRRLPP-WRRGRPKTDGGVGRTPAAAAAAVDSASEEGQDRPITK--------------------AGRWRKVGALAGLRKRLSLYGTHG 253
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig95.16972.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 4.57e-21 / Id = 40.53 Sequence D7FNE8_ECTSI
Match Name E-value Identity Description
D7FNE8_ECTSI 4.570e-21 40.53 Novel protein n=1 Tax=Ectocarpus siliculosus TaxID... [more]
back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Seed ortholog score 110.5 Seed ortholog evalue 1.5e-21 Seed eggNOG ortholog 2880.D7FNE8 KEGG ko ko:K16815 Hectar predicted targeting category other localisation EggNOG free text desc. phosphatidylethanolamine catabolic process EggNOG OGs KOG4231@1,KOG4231@2759 COG Functional cat. U Best tax level Eukaryota Best eggNOG OG NA|NA|NA BRITE ko00000 Exons 4 Model size 1024 Cds size 1023 Stop 0 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622930807.8125641-CDS-C-linearis_contig95:210278..210359 1622930807.8125641-CDS-C-linearis_contig95:210278..210359 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig95 210279..210359 + 1690881260.399508-CDS-C-linearis_contig95:210278..210359 1690881260.399508-CDS-C-linearis_contig95:210278..210359 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig95 210279..210359 + 1622930807.8368125-CDS-C-linearis_contig95:211479..211623 1622930807.8368125-CDS-C-linearis_contig95:211479..211623 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig95 211480..211623 + 1690881260.4253554-CDS-C-linearis_contig95:211479..211623 1690881260.4253554-CDS-C-linearis_contig95:211479..211623 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig95 211480..211623 + 1622930807.8563366-CDS-C-linearis_contig95:212113..212209 1622930807.8563366-CDS-C-linearis_contig95:212113..212209 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig95 212114..212209 + 1690881260.4403102-CDS-C-linearis_contig95:212113..212209 1690881260.4403102-CDS-C-linearis_contig95:212113..212209 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig95 212114..212209 + 1622930807.8734758-CDS-C-linearis_contig95:212599..213301 1622930807.8734758-CDS-C-linearis_contig95:212599..213301 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig95 212600..213301 + 1690881260.4558818-CDS-C-linearis_contig95:212599..213301 1690881260.4558818-CDS-C-linearis_contig95:212599..213301 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig95 212600..213301 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig95.16972.1
>prot_C-linearis_contig95.16972.1 ID=prot_C-linearis_contig95.16972.1|Name=mRNA_C-linearis_contig95.16972.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=341bp
MSAAGAAAARRRVLDSSGMARHNIGQQGDPTLDQQSPLDIDGSKGSVAEG back to top mRNA from alignment at C-linearis_contig95:210279..213301+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig95.16972.1 ID=mRNA_C-linearis_contig95.16972.1|Name=mRNA_C-linearis_contig95.16972.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3023bp|location=Sequence derived from alignment at C-linearis_contig95:210279..213301+ (Chordaria linearis ClinC8C monoicous)ATGTCGGCGGCGGGGGCGGCGGCGGCGAGGAGGCGGGTGTTGGATTCGTC
GGGCATGGCACGCCACAACATCGGGCAGCAG GTACTGTCTTGCCTGTGGA
GTTTTTGTATTCATGCGACCAGATTTTGTTTTACGGCATGCTCATGCTTG
CGTCTCGTGCATGACGTGTACGTACGTGGTCAATTAGCGAGGTGCTTGGT
CGTATCTACTGCTGCTGCTGCTGCTGCTGCTGCTGTGGTACGCGTTGTTG
TGGTCGCTGCGTTCCTGTCCCGCCGCTGTTGTCGCGTGTTTCCGTTTTGA
CGACATCGGCATCGGCATCGGCATCGGCATCGACATCGACATCGACATCG
ACATCGGCATCGGATGCCTTGTTCTCTGGGATTTGGGTGTCGTCTTAAAG
TCTTAACGTCTTAACGTCTTAACGTCTTAAAGTTTAACGTCTTAAAGTCT
TAAAGTCTTAAAGTCTTAACGTCTTAAAGTCTTAACGTCTTAACGTCTTA
AAGTCTTAACGTCTTAAATTCTTAAAGTCTTAACGTCTTAAAGTCTTAAC
GTCTTAACGTCTTAAAGTCTTAAAGTCTTAAAGTCTTAACGTCTTAAAGT
CTTAACGTCTTAACGTCTTAACGTCTTAAAGTCTTAAAGTCTTAAAGTCT
TAACGTCTTAAAGTCTTAACGTCTTAACGTCTTAAAGTCTTAAAGTCTTA
AAGTCTTAACGTCTTAAAGTCTTAACGTCTTAAAGTCTTAAAGTCTTAAA
GTCTTAACGTCTTAAAGTCTTAACAGGGGCGGGGCGCAGAGGGGGTGCGG
CACCGCGTGCTCGGGGTTACCAGAGACACCTGCACGTGGACCCTTACTTC
TGCTGCTTACTTGCTGCTTGCTTGCTGCTTGCTTGCTGCTTGCTTGCTGC
TTGCTTGCTGCTTGCTTGCTGCTTGCTTGCTGCTTGCTTGCTGCTTGCTT
GCTGCTTGCTTGCTGCTGACTTCTGCTCGTGCTGGTGCTGGTGCTGGTGC
TGCTGGCTTCTTCTGCTGCACTATTCGTGTTTTTCGTCCCCCGTAAATCC
ACGCGGCGCAAAAACCCGCTTAAAAATCCTCGACATGACATGTCGCAGCA
ACGCACGCACGGATATGAGAACCGGACCCCCCCCCCCTACACACACACGC
TCACACATTGTTTCTCGGCACCCTCTTCCCCCCTTTTTGCTCCTTGTCAA
GGGCGACCCGACTCTCGACCAGCAGTCGCCCCTAGACATCGACGGCAGCA
AAGGTTCGGTTGCGGAAGGGGGGGGGGGTGCGCCGGACGGGCCTCCTCGG
GAAGGGTTGGGCTCGTGGGAGATCTTCGGAGAAGGCATCTCGGGG GTGAG
GTTGTTGCTTGGCGTCGCGGGATTGGCATCAGTCGGCGCTAAGGGCTGAA
GTTGAAGGTTAAGGTTATGGGTTGTCCAGTGGGGTGAGGGCTCCTGAGAG
GAATCCCGGAAAAGGGATCTAGAATATCAAGGGCGTGAGGTACACAACAT
GTTTCAGCGACTTAAAGCAGCAGCGCGAAGGAGTGTGGTGGAAAGGGGCG
CATTGCATGTGCGCCCCCCTCGACCCCAAAAGCCTGAAAGCTGAAAGCCA
AGTCCTTGCATCTTTCGCCCGCCCGCCCGCCCGCCCGCCCGCCCGCCCGC
CGGCTGCCAGTCTTCTCGCAGCCATTGGTTGCCGTGTACTTGGAAGTATG
TACCCCTAATACCAAATACCTTCCGGTTGTGGCCTTTCCTGGCCTTTTTT
TTTCTTCTTTTTTTTGCGCTTCCAAGACCCTCGAACTCTGCCTTGTCTGT
CCAAAACATCGACGAATTGAATGGAATGGAATCAGGCTTTCCTGCAGGCG
CAGCAGGGTCTGGAAGGGCTCAGTCTCCCGGGGGTCGGGGACGCGTTTTG
GCTCACGTTCGGCCAGATGGATGTCCCGGAG GTGAGAGCGCGCGGGGTGC
GTTGGTTGTTGTTTTTCTTCATCCTATGTCATGTCGTGTCATGTCATGTC
ATGGCGTGCTTGGCTTGGCTTGTCGTCGTCCGTTGTTGTCTGTAACAAGT
TGTTGGATGCTATTTCCTGGGTATATACCACCAATGACATAAGTGTTACG
TCTGTTTCCTGGGTATGCTTCGAAGTATACCACCAAATCACGGAATTGTT
CCGTCTATTTTCTGGGTATTTACCACCCATCACTACCACCAATCAATCCG
TCCGATTCCTAACGATGGCAAACCCGGACGTTTTGTTCTTCTTTTGTTTC
CCCTCGTCGTGCCAACACGGTGCGGTTCTGGTCACCCCAAACTTGGGGAT
GGACAACGAATCCAACAAAAGCTGCCTGCCCTGCCCGAACTACGACTCTT
CGGCCTCTCCTGGCCACCTCCCCCGTCGACAACACCAAAACCCGCAACTA
AACCAAAAAAGACGACGAAAAGAACAAAAATAACGAAAATAACCCCGTCA
GCGACACCGCCGGCGACACCAACACCCGTAGGAGGGGCACCTGCAGCAGC
AACAGTAGCAGCCGCAGGGAGGGCAACAGTCACAACCGCGGCGGGCAACG
CCGAAGACGCTTCAACGGCTACGCTAGTCGAAAGAAGGGCGGGCGGCAAG
AAACAGGGGCTGTCGGGGAGGATTTCTTCCATGTGGCGCAGAAAACGGCC
CGCCGTGGCAGCGGCAGCGATGGCCGGCGGGGGCGAGGGTAGCGGATCAG
TGCCCACCACTAACCTGCCAGGAGCAGAAGCTGCAGTAGATGGTGGAGGT
GGAGGGGGACGCACGACAAGAACAACAAGCAGGGGGGGCGAGCAGAAAGC
GGCGGCGGGGCGATGGAGGAAGGTCGGGGCCTTGGCCGGGCTTAGGAGGC
GGCTCCCGCTGCTCGGTCGGAGCGGCGGCGGTGGTGCTGCCAGCACCAGC
AGTGGCGGTGGCGGCAATGTGGAGGGAGTGGGTGGTCCTGATCCTCTTGG
GGACGCGTCTTCCGCGGTATTGCCAAGCATAGAGCGACAAGAAAAGAAGA
AGGAAGAGTTCGAGGAGGAGGAG back to top Coding sequence (CDS) from alignment at C-linearis_contig95:210279..213301+
>mRNA_C-linearis_contig95.16972.1 ID=mRNA_C-linearis_contig95.16972.1|Name=mRNA_C-linearis_contig95.16972.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2046bp|location=Sequence derived from alignment at C-linearis_contig95:210279..213301+ (Chordaria linearis ClinC8C monoicous) back to top