prot_C-linearis_contig93.16915.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig93.16915.1
Unique Nameprot_C-linearis_contig93.16915.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length181
Homology
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BLAST of mRNA_C-linearis_contig93.16915.1 vs. uniprot
Match: A0A6H5KBF2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBF2_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 2.590e-23
Identity = 51/71 (71.83%), Postives = 57/71 (80.28%), Query Frame = 0 
Query:    4 GAGAVVSLPVAMETCGYLLPLWGYRRSAFLETTKAGDTLETREILLALSWLTAKARLFHAYEQSSFVSPLP 74
            GA A V LPV METCGYLLPLWGYRR AF+E  KA D L+TRE+LLALSW+ AKA+ F A+EQS  VSPLP
Sbjct:  378 GAAAEVPLPVVMETCGYLLPLWGYRRKAFIEGIKACDVLQTRELLLALSWMMAKAKAFPAFEQSRLVSPLP 448
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BLAST of mRNA_C-linearis_contig93.16915.1 vs. uniprot
Match: D7G2T0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T0_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 3.910e-23
Identity = 49/72 (68.06%), Postives = 60/72 (83.33%), Query Frame = 0 
Query:    3 VGAGAVVSLPVAMETCGYLLPLWGYRRSAFLETTKAGDTLETREILLALSWLTAKARLFHAYEQSSFVSPLP 74
            +GA A V LPVAMETCG+LLP+WGYRR AF+E  KA D L+TRE+LLALSW+ AKA++F A+EQ+  VSPLP
Sbjct:  107 LGASAEVPLPVAMETCGHLLPMWGYRRKAFIEGIKACDVLQTREVLLALSWMMAKAKVFPAFEQARLVSPLP 178
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig93.16915.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KBF2_9PHAE2.590e-2371.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2T0_ECTSI3.910e-2368.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027996Domain of unknown function DUF4509PFAMPF14970DUF4509coord: 22..73
e-value: 1.1E-6
score: 28.7
NoneNo IPR availableTMHMMTMhelixcoord: 5..27

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig93contigC-linearis_contig93:326327..328595 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig93.16915.1mRNA_C-linearis_contig93.16915.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig93 326327..328597 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig93.16915.1 ID=prot_C-linearis_contig93.16915.1|Name=mRNA_C-linearis_contig93.16915.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=181bp
AGVGAGAVVSLPVAMETCGYLLPLWGYRRSAFLETTKAGDTLETREILLA
LSWLTAKARLFHAYEQSSFVSPLPPEQQLQQQHQHHQQLQPYQHLHHQRQ
PQYLQQAQPQPQPRQQRDCQPQPLPFPTDPSEAPEIVRSARDVFLASLQD
EEQVEQDSWPHKQLHHQQRWQGAGDDNREKG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027996DUF4509