Homology
BLAST of mRNA_C-linearis_contig93.16915.1 vs. uniprot
Match:
A0A6H5KBF2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBF2_9PHAE)
HSP 1 Score: 106 bits (264), Expect = 2.590e-23
Identity = 51/71 (71.83%), Postives = 57/71 (80.28%), Query Frame = 1
Query: 10 GAGAVVSLPVAMETCGYLLPLWGYRRSAFLETTKAGDTLETREILLALSWLTAKARLFHAYEQSSFVSPLP 222
GA A V LPV METCGYLLPLWGYRR AF+E KA D L+TRE+LLALSW+ AKA+ F A+EQS VSPLP
Sbjct: 378 GAAAEVPLPVVMETCGYLLPLWGYRRKAFIEGIKACDVLQTRELLLALSWMMAKAKAFPAFEQSRLVSPLP 448
BLAST of mRNA_C-linearis_contig93.16915.1 vs. uniprot
Match:
D7G2T0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T0_ECTSI)
HSP 1 Score: 105 bits (262), Expect = 3.910e-23
Identity = 49/72 (68.06%), Postives = 60/72 (83.33%), Query Frame = 1
Query: 7 VGAGAVVSLPVAMETCGYLLPLWGYRRSAFLETTKAGDTLETREILLALSWLTAKARLFHAYEQSSFVSPLP 222
+GA A V LPVAMETCG+LLP+WGYRR AF+E KA D L+TRE+LLALSW+ AKA++F A+EQ+ VSPLP
Sbjct: 107 LGASAEVPLPVAMETCGHLLPMWGYRRKAFIEGIKACDVLQTREVLLALSWMMAKAKVFPAFEQARLVSPLP 178
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig93.16915.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 2.59e-23 / Id = 71.83 Expect = 3.91e-23 / Id = 68.06 Sequence A0A6H5KBF2_9PHAE D7G2T0_ECTSI
Match Name E-value Identity Description
A0A6H5KBF2_9PHAE 2.590e-23 71.83 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more] D7G2T0_ECTSI 3.910e-23 68.06 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Ec32 ortholog description hypothetical protein Ec32 ortholog Ec-13_004250.1 Exons 3 Model size 545 Cds size 543 Stop 0 Start 0
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622930796.4678488-CDS-C-linearis_contig93:326326..326409 1622930796.4678488-CDS-C-linearis_contig93:326326..326409 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig93 326327..326409 + 1690881254.7991185-CDS-C-linearis_contig93:326326..326409 1690881254.7991185-CDS-C-linearis_contig93:326326..326409 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig93 326327..326409 + 1622930796.4806366-CDS-C-linearis_contig93:327692..327747 1622930796.4806366-CDS-C-linearis_contig93:327692..327747 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig93 327693..327747 + 1690881254.810347-CDS-C-linearis_contig93:327692..327747 1690881254.810347-CDS-C-linearis_contig93:327692..327747 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig93 327693..327747 + 1622930796.4923308-CDS-C-linearis_contig93:328190..328595 1622930796.4923308-CDS-C-linearis_contig93:328190..328595 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig93 328191..328595 + 1690881254.824702-CDS-C-linearis_contig93:328190..328595 1690881254.824702-CDS-C-linearis_contig93:328190..328595 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig93 328191..328595 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig93.16915.1
>prot_C-linearis_contig93.16915.1 ID=prot_C-linearis_contig93.16915.1|Name=mRNA_C-linearis_contig93.16915.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=181bp
AGVGAGAVVSLPVAMETCGYLLPLWGYRRSAFLETTKAGDTLETREILLA back to top mRNA from alignment at C-linearis_contig93:326327..328597+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig93.16915.1 ID=mRNA_C-linearis_contig93.16915.1|Name=mRNA_C-linearis_contig93.16915.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2271bp|location=Sequence derived from alignment at C-linearis_contig93:326327..328597+ (Chordaria linearis ClinC8C monoicous)GCGGGCGTGGGGGCGGGGGCGGTGGTCTCGTTGCCGGTGGCGATGGAGAC
CTGCGGGTACCTGCTGCCGCTCTGGGGGTATAG GTGAGTTTTTGTTGTTG
TTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTT
GGTTGTTTCGCACGTGAGCTCTCTAGTTCGAAACATCCATCGGGGTCCGC
GGTCACTCTGACCAAGGCAAACCCGTCGCCGCCAAGAAAACGTATGGAAA
CGGTTTGGTGGGTACGCATGGAGGTGGTAAGGGCGGCACTCTGGGTTAAG
GCTAACCAGACAGAGTCGGCTGCAACAACATGTAGACCCACAGAGTCCTT
GTGTACCATAGTTGTTGCCTCGTTTTTTTTTGGGTGTGTGGTTCATGGTG
TTAAGTTTCCCTGACGTCAATTGTGCATGAGTAAATGTGCTTGACGGGAT
GGCGCCGGTGTGTTTGATGCGGGACACAGTTTTATTCTACATCAAGAAGT
ACATCGGGTTTTCTGCCATGCTTCGCCGCACTTTGGCAAAATTCTAGACT
ATTCTAGGGACCCAGCACCGCGAGGCGTGCCGCTCTTCCACGGCATGTAC
ACCATGATGATCGCGTCGACCGAGAGAAGCAGAGCGCGAGATGGAGACGC
CGACGTGATGCGTTTTTTGTGACGTAGTTGCGGGATTGGTCTGTGTTGTC
ATCGCATGGCTCATGGCTCATCGTTCATGAATTCATGGCTCATGACTCGT
GGTTTCTGAGTCATGGCTCATGAGGTGTGTCGGGGTCATGTTAGGGCGTC
TTTATTGCCATACCATGGCTCATATCTCATGGCTCATGAGGAAGCTCGTG
TCGAAAACCGCAGTTGGGGCCCGGGGATAATAAATCGGTTCCTGGTTTGG
ATGAGATGGGTGCATTGCTTGGCTGTCGCGCTTTTCTTCCGACACCTCTC
GCCTCTCTCGGGATTCCGGTGCTCGCCTGACGGTTTGATGCAGGCGGTGC
CTACAGATAACTCCCACCTTCCGTCTCTTTCTCCTCCCCGTCTTATTTCC
GTCTGGCTCCTCTCTTTCCGTGTTTTCTCCCCCATGATTCCGGCGTCCAT
CCTATCCTATCCTATCCTATCCTCGATTTCACACACCCTTTTGACCTATT
CAATGCAGGGTGATGTCGGCTGACACCTCCGCCCCCTCTCTCTCCGCCGC
TCCTTTTGTCTATCTCTGCTGCCTGCCTGTCTGCCTGCCTGGCTCTCTCT
TTCTTTGTTTCCTCCTCACGTGACTGGTCGTCCACTCCCACCCCTTTCCG
ACATGGATGGTGCGGTATGCCGTGCCATCGTTATTGCCGCGTCGTTGCTG
TTGTCGGTGTCACCAGGAGATCAGCGTTTTTGGAAACGACGAAGGCCGGC
GACACTCTTGAGACCCGAGAG GTTGGTATTGTTTTATTTTCGGTTTTCTT
TCGTGCTTGGTTCCGCTCTTGTTCGGTCCCTGCGTCAAAGTGATGACGCC
GGCGGCAACCCTCCCCCTTCAGACGCTGGACTCGGTCGGCACGCTTGTTT
TTTTCGTTTTTGCTGCAATTTTTTCCAACCTTTGCTGTATTTTTGAGCGT
TGACACACCTTTTGAAGCGCACCGCGAACCAGATATATTGGAAAGGCTTT
TTTGAAGCCAGGTCGGGACTTGCATTGGTCGAACATGTCGACCAAACTGC
TGTGGGTGTCACGTGTGTGGCACCCGGAACTGAACTCCACACCCGTCTGC
GGGGATTACTTTTCTTGTAAATCGTACAGATACAACCACCCTTTCCCCCT
TTTGATCTCGCTAAGCTTACGGGGCATTCTGTTGACGATGGCGTGCCCCT
CTCCCCGCTTCCAGATCCTGCTGGCCCTCTCGTGGCTGACGGCGAAAGCT
AGGCTCTTCCACGCGTACGAACAGTCGTCCTTCGTCTCGCCCCTCCCTCC
AGAGCAGCAACTTCAACAGCAGCATCAGCATCATCAACAACTACAACCGT
ACCAACACCTCCATCACCAACGGCAACCGCAATATCTGCAACAAGCCCAA
CCCCAACCCCAACCACGGCAACAGCGGGATTGCCAACCGCAGCCGCTGCC
GTTCCCGACCGACCCCTCCGAGGCGCCAGAGATAGTACGAAGCGCCAGAG
ACGTCTTCTTGGCGTCTCTCCAAGACGAAGAACAGGTAGAACAAGACAGC
TGGCCTCACAAGCAACTGCATCACCAGCAGCGGTGGCAGGGGGCGGGGGA
CGACAACAGAGAAAAGGGG back to top Coding sequence (CDS) from alignment at C-linearis_contig93:326327..328597+
>mRNA_C-linearis_contig93.16915.1 ID=mRNA_C-linearis_contig93.16915.1|Name=mRNA_C-linearis_contig93.16915.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1086bp|location=Sequence derived from alignment at C-linearis_contig93:326327..328597+ (Chordaria linearis ClinC8C monoicous) back to top