prot_C-linearis_contig90.16778.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig90.16778.1
Unique Nameprot_C-linearis_contig90.16778.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length138
Homology
BLAST of mRNA_C-linearis_contig90.16778.1 vs. uniprot
Match: A0A6H5KYQ2_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYQ2_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 3.910e-33
Identity = 66/122 (54.10%), Postives = 88/122 (72.13%), Query Frame = 0
Query:    4 IDFLATLDDLRLRLEEMGEPTTDETYEDLVMVALTSSPEYSFLREMNNRTQFLDVDELKTTATNRFLDAQSRKSSGPAVSGRGAAMVAASTVQCFNCQEYGHYQRDCPASLPAAAAAVSGKP 125
            IDF +   +LRLRLE +GE  +D+ Y D+ +  LTS PE+ F+REM+ R +F  VD+L+ TAT  F+D QSRK++GPAVSGRGAAM A+S+ QC  C+E+GH+QRDCP S P + A    KP
Sbjct:  142 IDFFSKACELRLRLETLGETVSDDVYLDITLSGLTSVPEFHFIREMHYRNEFTSVDDLQDTATRFFVDQQSRKAAGPAVSGRGAAMAASSSDQCHRCKEFGHFQRDCPKSAPPSRARKGKKP 263          
BLAST of mRNA_C-linearis_contig90.16778.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 4.080e-33
Identity = 66/122 (54.10%), Postives = 88/122 (72.13%), Query Frame = 0
Query:    4 IDFLATLDDLRLRLEEMGEPTTDETYEDLVMVALTSSPEYSFLREMNNRTQFLDVDELKTTATNRFLDAQSRKSSGPAVSGRGAAMVAASTVQCFNCQEYGHYQRDCPASLPAAAAAVSGKP 125
            IDF +   +LRLRLE +GE  +D+ Y D+ +  LTS PE+ F+REM+ R +F  VD+L+ TAT  F+D QSRK++GPAVSGRGAAM A+S+ QC  C+E+GH+QRDCP S P + A    KP
Sbjct:  142 IDFFSKACELRLRLETLGETVSDDVYLDITLSGLTSVPEFHFIREMHYRNEFTSVDDLQDTATRFFVDQQSRKAAGPAVSGRGAAMAASSSDQCHRCKEFGHFQRDCPKSAPPSRARKGKKP 263          
BLAST of mRNA_C-linearis_contig90.16778.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 4.170e-33
Identity = 66/122 (54.10%), Postives = 88/122 (72.13%), Query Frame = 0
Query:    4 IDFLATLDDLRLRLEEMGEPTTDETYEDLVMVALTSSPEYSFLREMNNRTQFLDVDELKTTATNRFLDAQSRKSSGPAVSGRGAAMVAASTVQCFNCQEYGHYQRDCPASLPAAAAAVSGKP 125
            IDF +   +LRLRLE +GE  +D+ Y D+ +  LTS PE+ F+REM+ R +F  VD+L+ TAT  F+D QSRK++GPAVSGRGAAM A+S+ QC  C+E+GH+QRDCP S P + A    KP
Sbjct:  142 IDFFSKACELRLRLETLGETVSDDVYLDITLSGLTSVPEFHFIREMHYRNEFTSVDDLQDTATRFFVDQQSRKAAGPAVSGRGAAMAASSSDQCHRCKEFGHFQRDCPKSAPLSRARKGKKP 263          
BLAST of mRNA_C-linearis_contig90.16778.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 4.190e-33
Identity = 66/122 (54.10%), Postives = 88/122 (72.13%), Query Frame = 0
Query:    4 IDFLATLDDLRLRLEEMGEPTTDETYEDLVMVALTSSPEYSFLREMNNRTQFLDVDELKTTATNRFLDAQSRKSSGPAVSGRGAAMVAASTVQCFNCQEYGHYQRDCPASLPAAAAAVSGKP 125
            IDF +   +LRLRLE +GE  +D+ Y D+ +  LTS PE+ F+REM+ R +F  VD+L+ TAT  F+D QSRK++GPAVSGRGAAM A+S+ QC  C+E+GH+QRDCP S P + A    KP
Sbjct:  142 IDFFSKACELRLRLETLGETVSDDVYLDITLSGLTSVPEFHFIREMHYRNEFTSVDDLQDTATRFFVDQQSRKAAGPAVSGRGAAMAASSSDQCHRCKEFGHFQRDCPKSAPPSRARKGKKP 263          
BLAST of mRNA_C-linearis_contig90.16778.1 vs. uniprot
Match: A0A6H5JU11_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU11_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 2.370e-29
Identity = 58/106 (54.72%), Postives = 80/106 (75.47%), Query Frame = 0
Query:    4 IDFLATLDDLRLRLEEMGEPTTDETYEDLVMVALTSSPEYSFLREMNNRTQFLDVDELKTTATNRFLDAQSRKSSGPAVSGRGAAMVAASTVQCFNCQEYGHYQRD 109
            IDF +   +LRLRLE +GE  +D+ Y D+ +  LTS PE+ F+REM+ R +F  VD+L+ TAT  F+D QSRK++GPAVSGRGAAM A+S+ QC  C+E+GH+QR+
Sbjct:  142 IDFFSKACELRLRLETLGETVSDDVYLDITLSGLTSVPEFHFIREMHYRNEFTSVDDLQDTATRFFVDQQSRKAAGPAVSGRGAAMAASSSDQCHRCKEFGHFQRE 247          
BLAST of mRNA_C-linearis_contig90.16778.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 4.390e-27
Identity = 58/107 (54.21%), Postives = 80/107 (74.77%), Query Frame = 0
Query:    5 DFLATLDDLRLRLEEMGEPTTDETYEDLVMVALTSSPEYSFLREMNNRTQFLDVDELKTTATNRFLDAQSRKSSGPAVSGRGAAMVA-ASTVQCFNCQEYGHYQRDC 110
            DFLA +DDLRLRLE+MGE   DE+YED+++ AL  S EY F+R+ +++ +   + E++TT  N ++D  SRKSSGP+V+GRG AM A +S VQC NCQE+GHY  +C
Sbjct:   99 DFLAKMDDLRLRLEDMGEKIPDESYEDVLLRAL--SKEYYFIRQTSHKDRTFGLTEIRTTMVNMYIDELSRKSSGPSVAGRGVAMSAESSNVQCRNCQEFGHYANEC 203          
BLAST of mRNA_C-linearis_contig90.16778.1 vs. uniprot
Match: A0A6H5JBV6_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV6_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 2.330e-24
Identity = 56/109 (51.38%), Postives = 73/109 (66.97%), Query Frame = 0
Query:    4 IDFLATLDDLRLRLEEMGEPTTDETYEDLVMVALTSSPEYSFLREMNNRTQFLDVDELKTTATNRFLDAQSRKSSGPAVSGRGAAMVAASTV-QCFNCQEYGHYQRDCP 111
            IDF     DL+LRL  +GE  +   Y D+++  LT +PE++F+REM+ R     VD L+ TA   F+D QSR +SGP VSGRGAAM AAS+  QC  C+EYG +QRDCP
Sbjct:  150 IDFFTKGWDLKLRLMVLGEEVSSPVYLDIMLSGLTKAPEFTFIREMHYRDNIASVDSLQATANRIFVDQQSRNASGPMVSGRGAAMAAASSSDQCHRCKEYGPFQRDCP 258          
BLAST of mRNA_C-linearis_contig90.16778.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 2.340e-17
Identity = 44/77 (57.14%), Postives = 56/77 (72.73%), Query Frame = 0
Query:   49 MNNRTQFLDVDELKTTATNRFLDAQSRKSSGPAVSGRGAAMVAASTVQCFNCQEYGHYQRDCPASLPAAAAAVSGKP 125
            M+ R +F  VD L+ TAT  F+D QSRK++GPAVSGRGAAM A+S+ QC  C+E+GH+QRDCP S P + A    KP
Sbjct:    1 MHYRNEFTSVDGLQDTATRFFVDQQSRKAAGPAVSGRGAAMAASSSDQCHRCKEFGHFQRDCPKSAPPSRARKGKKP 77          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig90.16778.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KYQ2_9PHAE3.910e-3354.10CCHC-type domain-containing protein (Fragment) n=1... [more]
A0A6H5KJN3_9PHAE4.080e-3354.10Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KJH6_9PHAE4.170e-3354.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J842_9PHAE4.190e-3354.10Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5JU11_9PHAE2.370e-2954.72Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K1J1_9PHAE4.390e-2754.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBV6_9PHAE2.330e-2451.38Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5JYB5_9PHAE2.340e-1757.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 96..112
e-value: 6.2E-4
score: 29.1
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 96..111
e-value: 3.1E-7
score: 30.2
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 97..111
score: 10.164
NoneNo IPR availableGENE3D4.10.60.10coord: 91..118
e-value: 5.0E-8
score: 34.5
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 89..114

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig90contigC-linearis_contig90:448847..449629 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig90.16778.1mRNA_C-linearis_contig90.16778.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig90 448847..449629 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig90.16778.1 ID=prot_C-linearis_contig90.16778.1|Name=mRNA_C-linearis_contig90.16778.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=138bp
QNVIDFLATLDDLRLRLEEMGEPTTDETYEDLVMVALTSSPEYSFLREMN
NRTQFLDVDELKTTATNRFLDAQSRKSSGPAVSGRGAAMVAASTVQCFNC
QEYGHYQRDCPASLPAAAAAVSGKPAAPASSEPSALVS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR036875Znf_CCHC_sf