prot_C-linearis_contig9.16656.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig9.16656.1
Unique Nameprot_C-linearis_contig9.16656.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length935
Homology
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BLAST of mRNA_C-linearis_contig9.16656.1 vs. uniprot
Match: D7G3D9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3D9_ECTSI)

HSP 1 Score: 585 bits (1509), Expect = 4.410e-200
Identity = 290/386 (75.13%), Postives = 334/386 (86.53%), Query Frame = 0 
Query:   38 MHQEVTVSDYKTMFGARMRSCFTGKSSVKWCMEQEVCTDDIDAIHLLNRMLERGLLHHCRLNKLVENSDTAYYRFPQDHFKVLVDQTGANQTVRKRLRPNSKTLQGEKALQERWYADVPTLPSEKACTVRKIGHVLKRLSPKDVTRGLRRHPMVFEGKEAVKLFQDSGVAKNPTDALAIGNAFLRAGLFHQIQLRAPLRNDETLYRLAEHQFAILVSRYQVWGLHNGMDPKYGGHGGSSN------MDDSRVGTVISNSDV---LETRGESALELATSSRYWTSYRASKLYLLNLSVIKGFIDMSDDWDNHVDELFPTYCECYLTRDKDGTTHSTVRSHKTLHPVWNCPVAFRDVDYLDTIGIDLKAQTQLGQDILIGSLEFHAHE 414
            MHQEV V ++KTM G  +++CF+GKS+V WC+++++C+D+IDAIHLLNRMLERGLLHHCRL+KLVE SDTAYYRFPQDHFKVLVDQTGA Q+VR+RLRPNSKTL GE AL+ERWYADVPTLPS+K   VRK G VL+RL P+DVTRGLRR+PMVF+GKEAV+L  D+G AK+ TDALAIGNAFLRAGLFHQ+ LRAPLRNDETLYRLA +QFAILVSR QVWG        Y  HGG+SN      +DDSRVGTVIS SD+   LET+G SALELAT+SRYWTSYRASKLY++NL+VI+GFIDMS+DWD+HVDE+FPTYCECYLTRDK+ TTHST+RSHKTLHPVWNCPVAF DVDYLD + IDLKAQT LGQD  IGS+EF AHE
Sbjct:    1 MHQEVPVKNFKTMLGGTIKACFSGKSAVDWCLQKDLCSDEIDAIHLLNRMLERGLLHHCRLSKLVEPSDTAYYRFPQDHFKVLVDQTGAQQSVRRRLRPNSKTLHGEAALKERWYADVPTLPSDK---VRKHGRVLQRLQPRDVTRGLRRYPMVFQGKEAVELLIDTGKAKDTTDALAIGNAFLRAGLFHQVNLRAPLRNDETLYRLAGNQFAILVSRDQVWGS------SY--HGGTSNARYSSALDDSRVGTVISGSDLSDALETKGRSALELATASRYWTSYRASKLYVVNLTVIEGFIDMSEDWDHHVDEMFPTYCECYLTRDKEATTHSTIRSHKTLHPVWNCPVAFVDVDYLDVVRIDLKAQTHLGQDTTIGSIEFDAHE 375
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BLAST of mRNA_C-linearis_contig9.16656.1 vs. uniprot
Match: A0A6H5KN37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN37_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 1.350e-16
Identity = 53/84 (63.10%), Postives = 60/84 (71.43%), Query Frame = 0 
Query:  550 MSSHGSSITSSIHSLPVGPWQDTHASAG--NGKRPSYSSSEARRGSTQSDLPDIHEDNEFHEQEPFQXXXXXXVPRGAKSNSNI 631
            MSSHG S+TSS+HSLP  PW D   +AG  NGKRPSY+SS+ARRGSTQSDLPDI EDNEFHEQ P Q       P G   + N+
Sbjct:    1 MSSHGGSVTSSLHSLPTLPWLDGLGAAGGVNGKRPSYTSSDARRGSTQSDLPDILEDNEFHEQGPHQEP----FPAGGTDSKNL 80
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BLAST of mRNA_C-linearis_contig9.16656.1 vs. uniprot
Match: D7G3E0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E0_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 4.670e-9
Identity = 31/38 (81.58%), Postives = 33/38 (86.84%), Query Frame = 0 
Query:    1 MKIDGVSLVEPSATDDPYAMGPVAVMIDIDLDALAQKM 38
            MKIDGVSLVEPS  DDP  MGPVAV+ID DLDALAQK+
Sbjct:    1 MKIDGVSLVEPSPADDPNGMGPVAVVIDCDLDALAQKV 38
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16656.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G3D9_ECTSI4.410e-20075.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KN37_9PHAE1.350e-1663.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3E0_ECTSI4.670e-981.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000591DEP domainSMARTSM00049DEP_3coord: 40..114
e-value: 1.2E-8
score: 44.8
coord: 172..246
e-value: 5.3E-7
score: 39.3
IPR000591DEP domainPFAMPF00610DEPcoord: 179..244
e-value: 2.1E-7
score: 30.9
coord: 48..112
e-value: 1.3E-8
score: 34.7
IPR000591DEP domainPROSITEPS50186DEPcoord: 38..114
score: 11.532
IPR000591DEP domainPROSITEPS50186DEPcoord: 172..246
score: 8.587
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 22..118
e-value: 8.2E-13
score: 50.2
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 161..250
e-value: 5.7E-8
score: 34.5
IPR035892C2 domain superfamilyGENE3D2.60.40.150coord: 321..445
e-value: 1.0E-5
score: 27.4
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 169..249
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 27..118
NoneNo IPR availableSUPERFAMILY49562C2 domain (Calcium/lipid-binding domain, CaLB)coord: 343..422

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:2416798..2435839 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16656.1mRNA_C-linearis_contig9.16656.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig9 2416590..2437666 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig9.16656.1 ID=prot_C-linearis_contig9.16656.1|Name=mRNA_C-linearis_contig9.16656.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=935bp
MKIDGVSLVEPSATDDPYAMGPVAVMIDIDLDALAQKMHQEVTVSDYKTM
FGARMRSCFTGKSSVKWCMEQEVCTDDIDAIHLLNRMLERGLLHHCRLNK
LVENSDTAYYRFPQDHFKVLVDQTGANQTVRKRLRPNSKTLQGEKALQER
WYADVPTLPSEKACTVRKIGHVLKRLSPKDVTRGLRRHPMVFEGKEAVKL
FQDSGVAKNPTDALAIGNAFLRAGLFHQIQLRAPLRNDETLYRLAEHQFA
ILVSRYQVWGLHNGMDPKYGGHGGSSNMDDSRVGTVISNSDVLETRGESA
LELATSSRYWTSYRASKLYLLNLSVIKGFIDMSDDWDNHVDELFPTYCEC
YLTRDKDGTTHSTVRSHKTLHPVWNCPVAFRDVDYLDTIGIDLKAQTQLG
QDILIGSLEFHAHEVMGKNNEIVVEFDCGSQQFADCAAAIIKVEFDPAVA
VSVDNPDGSKHHHLLTRGERRREREELMHTADMGRSRGPRYSNRRLMRGS
VRRTSLGATAEDMDPVFINVEGSSGCVLLDDDSTCPRRVDSFSSLPLGLM
SSHGSSITSSIHSLPVGPWQDTHASAGNGKRPSYSSSEARRGSTQSDLPD
IHEDNEFHEQEPFQEPFREPVPRGAKSNSNINESGGGSNNNSNSHSNVGR
DNGSADNRGSSGISNDSQDGKKMEQQQQQQQQGKGSAAAVNEQAEAPFGG
SGSGGGNDGSDSTNTTTTTSNDNDNDDDNDDDDNRTNHQNKSGKSNHTAA
NSSDKNTNTGSTAAGRPVRHNTNSRAAIVAPGPSRALHGGETGRRRGGAA
APTSGSGDANGPAAAAALRAIRRTSFDPTFLRDGEAGRDRAGGLAAGGRG
AAGGPASERSGNAGPTAPAAGRAQRRLTWAASPTASSGALPGNSLVVVWF
SHADLRTAVCCCCCCCCCGASKTLVYGPTKVLLI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000591DEP_dom
IPR036388WH-like_DNA-bd_sf
IPR035892C2_domain_sf
IPR036390WH_DNA-bd_sf