mRNA_C-linearis_contig9.16656.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig9.16656.1 vs. uniprot
Match: D7G3D9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3D9_ECTSI) HSP 1 Score: 585 bits (1509), Expect = 4.910e-195 Identity = 290/386 (75.13%), Postives = 334/386 (86.53%), Query Frame = 2
Query: 320 MHQEVTVSDYKTMFGARMRSCFTGKSSVKWCMEQEVCTDDIDAIHLLNRMLERGLLHHCRLNKLVENSDTAYYRFPQDHFKVLVDQTGANQTVRKRLRPNSKTLQGEKALQERWYADVPTLPSEKACTVRKIGHVLKRLSPKDVTRGLRRHPMVFEGKEAVKLFQDSGVAKNPTDALAIGNAFLRAGLFHQIQLRAPLRNDETLYRLAEHQFAILVSRYQVWGLHNGMDPKYGGHGGSSN------MDDSRVGTVISNSDV---LETRGESALELATSSRYWTSYRASKLYLLNLSVIKGFIDMSDDWDNHVDELFPTYCECYLTRDKDGTTHSTVRSHKTLHPVWNCPVAFRDVDYLDTIGIDLKAQTQLGQDILIGSLEFHAHE 1450
MHQEV V ++KTM G +++CF+GKS+V WC+++++C+D+IDAIHLLNRMLERGLLHHCRL+KLVE SDTAYYRFPQDHFKVLVDQTGA Q+VR+RLRPNSKTL GE AL+ERWYADVPTLPS+K VRK G VL+RL P+DVTRGLRR+PMVF+GKEAV+L D+G AK+ TDALAIGNAFLRAGLFHQ+ LRAPLRNDETLYRLA +QFAILVSR QVWG Y HGG+SN +DDSRVGTVIS SD+ LET+G SALELAT+SRYWTSYRASKLY++NL+VI+GFIDMS+DWD+HVDE+FPTYCECYLTRDK+ TTHST+RSHKTLHPVWNCPVAF DVDYLD + IDLKAQT LGQD IGS+EF AHE
Sbjct: 1 MHQEVPVKNFKTMLGGTIKACFSGKSAVDWCLQKDLCSDEIDAIHLLNRMLERGLLHHCRLSKLVEPSDTAYYRFPQDHFKVLVDQTGAQQSVRRRLRPNSKTLHGEAALKERWYADVPTLPSDK---VRKHGRVLQRLQPRDVTRGLRRYPMVFQGKEAVELLIDTGKAKDTTDALAIGNAFLRAGLFHQVNLRAPLRNDETLYRLAGNQFAILVSRDQVWGS------SY--HGGTSNARYSSALDDSRVGTVISGSDLSDALETKGRSALELATASRYWTSYRASKLYVVNLTVIEGFIDMSEDWDHHVDEMFPTYCECYLTRDKEATTHSTIRSHKTLHPVWNCPVAFVDVDYLDVVRIDLKAQTHLGQDTTIGSIEFDAHE 375
BLAST of mRNA_C-linearis_contig9.16656.1 vs. uniprot
Match: A0A6H5KN37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN37_9PHAE) HSP 1 Score: 92.4 bits (228), Expect = 2.160e-16 Identity = 53/84 (63.10%), Postives = 60/84 (71.43%), Query Frame = 2
Query: 1856 MSSHGSSITSSIHSLPVGPWQDTHASAG--NGKRPSYSSSEARRGSTQSDLPDIHEDNEFHEQEPFQXXXXXXVPRGAKSNSNI 2101
MSSHG S+TSS+HSLP PW D +AG NGKRPSY+SS+ARRGSTQSDLPDI EDNEFHEQ P Q P G + N+
Sbjct: 1 MSSHGGSVTSSLHSLPTLPWLDGLGAAGGVNGKRPSYTSSDARRGSTQSDLPDILEDNEFHEQGPHQEP----FPAGGTDSKNL 80
BLAST of mRNA_C-linearis_contig9.16656.1 vs. uniprot
Match: D7G3E0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E0_ECTSI) HSP 1 Score: 63.9 bits (154), Expect = 5.000e-9 Identity = 31/38 (81.58%), Postives = 33/38 (86.84%), Query Frame = 2
Query: 209 MKIDGVSLVEPSATDDPYAMGPVAVMIDIDLDALAQKM 322
MKIDGVSLVEPS DDP MGPVAV+ID DLDALAQK+
Sbjct: 1 MKIDGVSLVEPSPADDPNGMGPVAVVIDCDLDALAQKV 38 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16656.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig9.16656.1 >prot_C-linearis_contig9.16656.1 ID=prot_C-linearis_contig9.16656.1|Name=mRNA_C-linearis_contig9.16656.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=935bp MKIDGVSLVEPSATDDPYAMGPVAVMIDIDLDALAQKMHQEVTVSDYKTMback to top mRNA from alignment at C-linearis_contig9:2416590..2437666+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig9.16656.1 ID=mRNA_C-linearis_contig9.16656.1|Name=mRNA_C-linearis_contig9.16656.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=21077bp|location=Sequence derived from alignment at C-linearis_contig9:2416590..2437666+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig9:2416590..2437666+ >mRNA_C-linearis_contig9.16656.1 ID=mRNA_C-linearis_contig9.16656.1|Name=mRNA_C-linearis_contig9.16656.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=5610bp|location=Sequence derived from alignment at C-linearis_contig9:2416590..2437666+ (Chordaria linearis ClinC8C monoicous)back to top |