prot_C-linearis_contig9.16585.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_C-linearis_contig9.16585.1
Unique Name	prot_C-linearis_contig9.16585.1
Type	polypeptide
Organism	Chordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length	273

Homology

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BLAST of mRNA_C-linearis_contig9.16585.1 vs. uniprot
Match: D8LSJ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSJ7_ECTSI)

HSP 1 Score: 214 bits (544), Expect = 2.630e-65
Identity = 133/203 (65.52%), Postives = 152/203 (74.88%), Query Frame = 0

Query:   11 VVAAIVANIAAGLLAIWWWRGMGKSGRSSGG---QDAKKSLPHTPGVRVVCVQDSSTESSNDG-----WESSGNGGRSKGSEASKWEQSKQKGSLGYYFAHHITMKELAPEDYQMNGPRLLSKGDP-AASAXXXXXXXXXXXXXXXXXXXXXPQQVTSYSWEDHGEEARLTFRQSDWEWAKVEAEEIRVEWGPRRFRMSIDSR 204
            V+A I    A   L +WW+RGM + GRSSGG     +KK L HTPG+R VC+QDS TE SN G        +G G R + + +SKWEQSKQKG LGYYFAHHITMKELAPEDYQMNGP+LLSKGD  +A         XXXXXXXXXXXXXXPQQ++SYSWED+GEE RLTFRQS+WEWAKV+ EEI +EWG RRFRMSIDSR
Sbjct:   11 VLACIALAAALAALLLWWFRGMSE-GRSSGGAGTSGSKKPLAHTPGIRAVCMQDSFTEGSNGGGXXXXXXXTGQGDR-RAAASSKWEQSKQKGDLGYYFAHHITMKELAPEDYQMNGPKLLSKGDTTSAPNGARPNGSXXXXXXXXXXXXXXPQQISSYSWEDYGEEVRLTFRQSEWEWAKVDVEEIEIEWGSRRFRMSIDSR 211

[Close]

BLAST of mRNA_C-linearis_contig9.16585.1 vs. uniprot
Match: A0A6H5L1W9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1W9_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 2.640e-33
Identity = 75/130 (57.69%), Postives = 89/130 (68.46%), Query Frame = 0

Query:    3 ENFDSLPWVVAAIVANIAAGLLAIWWWRGMGKSGRSSGG---QDAKKSLPHTPGVRVVCVQDSSTESSNDG-WESSGNG---GRSKGSEASKWEQSKQKGSLGYYFAHHITMKELAPEDYQMNGPRLLSK 125
            E++        A+ A +AA  L +WW  GM + GRSSGG     +KK L HTPG+R VCVQDS T+ S+ G W SS +    G    + +SKWEQSKQKG LGYYFAHHITMKELAPEDYQMNGP+LLSK
Sbjct:    5 EHYQREVLACIALAAGLAA--LLLWWSPGMSE-GRSSGGVGTSGSKKPLAHTPGIRAVCVQDSFTQGSHGGGWGSSASSTGQGDGPAAASSKWEQSKQKGDLGYYFAHHITMKELAPEDYQMNGPKLLSK 131

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig9.16585.1 vs. uniprot

BLAST of mRNA_C-linearis_contig9.16585.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LSJ7_ECTSI	2.630e-65	65.52	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5L1W9_9PHAE	2.640e-33	57.69	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 272..272
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 30..249
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 250..271
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 12..29
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..11
None	No IPR available	TMHMM	TMhelix		coord: 10..29
None	No IPR available	TMHMM	TMhelix		coord: 248..270

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-linearis_contig9	contig	C-linearis_contig9:1630137..1632070 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig9.16585.1	mRNA_C-linearis_contig9.16585.1	Chordaria linearis ClinC8C monoicous	mRNA	C-linearis_contig9 1629067..1632177 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_C-linearis_contig9.16585.1 ID=prot_C-linearis_contig9.16585.1|Name=mRNA_C-linearis_contig9.16585.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=273bp
MPENFDSLPWVVAAIVANIAAGLLAIWWWRGMGKSGRSSGGQDAKKSLPH
TPGVRVVCVQDSSTESSNDGWESSGNGGRSKGSEASKWEQSKQKGSLGYY
FAHHITMKELAPEDYQMNGPRLLSKGDPAASAATNGASASNGSSPPTTTK
RRRPQQVTSYSWEDHGEEARLTFRQSDWEWAKVEAEEIRVEWGPRRFRMS
IDSRYEYFSSCRWKDSCNRMVSAAFPVGQLWVRRWWCCCFSHRARGMCRF
VLCFVLLNVAGWVLFQLRFWVL*