mRNA_C-linearis_contig9.16585.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig9.16585.1
Unique NamemRNA_C-linearis_contig9.16585.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig9.16585.1 vs. uniprot
Match: D8LSJ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSJ7_ECTSI)

HSP 1 Score: 214 bits (544), Expect = 6.660e-61
Identity = 133/203 (65.52%), Postives = 152/203 (74.88%), Query Frame = 3 
Query:  138 VVAAIVANIAAGLLAIWWWRGMGKSGRSSGG---QDAKKSLPHTPGVRVVCVQDSSTESSNDG-----WESSGNGGRSKGSEASKWEQSKQKGSLGYYFAHHITMKELAPEDYQMNGPRLLSKGDP-AASAXXXXXXXXXXXXXXXXXXXXXPQQVTSYSWEDHGEEARLTFRQSDWEWAKVEAEEIRVEWGPRRFRMSIDSR 719
            V+A I    A   L +WW+RGM + GRSSGG     +KK L HTPG+R VC+QDS TE SN G        +G G R + + +SKWEQSKQKG LGYYFAHHITMKELAPEDYQMNGP+LLSKGD  +A         XXXXXXXXXXXXXXPQQ++SYSWED+GEE RLTFRQS+WEWAKV+ EEI +EWG RRFRMSIDSR
Sbjct:   11 VLACIALAAALAALLLWWFRGMSE-GRSSGGAGTSGSKKPLAHTPGIRAVCMQDSFTEGSNGGGXXXXXXXTGQGDR-RAAASSKWEQSKQKGDLGYYFAHHITMKELAPEDYQMNGPKLLSKGDTTSAPNGARPNGSXXXXXXXXXXXXXXPQQISSYSWEDYGEEVRLTFRQSEWEWAKVDVEEIEIEWGSRRFRMSIDSR 211
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BLAST of mRNA_C-linearis_contig9.16585.1 vs. uniprot
Match: A0A6H5L1W9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1W9_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 1.040e-30
Identity = 74/119 (62.18%), Postives = 86/119 (72.27%), Query Frame = 3 
Query:  147 AIVANIAAGLLAIWWWRGMGKSGRSSGG---QDAKKSLPHTPGVRVVCVQDSSTESSNDG-WESSGNG---GRSKGSEASKWEQSKQKGSLGYYFAHHITMKELAPEDYQMNGPRLLSK 482
            A+ A +AA  L +WW  GM + GRSSGG     +KK L HTPG+R VCVQDS T+ S+ G W SS +    G    + +SKWEQSKQKG LGYYFAHHITMKELAPEDYQMNGP+LLSK
Sbjct:   16 ALAAGLAA--LLLWWSPGMSE-GRSSGGVGTSGSKKPLAHTPGIRAVCVQDSFTQGSHGGGWGSSASSTGQGDGPAAASSKWEQSKQKGDLGYYFAHHITMKELAPEDYQMNGPKLLSK 131
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16585.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSJ7_ECTSI6.660e-6165.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L1W9_9PHAE1.040e-3062.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:1629067..1632177 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-09_001900.1
Exons3
Model size1996
Cds size819
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16585.1prot_C-linearis_contig9.16585.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig9 1630137..1632070 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930737.3906674-UTR-C-linearis_contig9:1629066..16301361622930737.3906674-UTR-C-linearis_contig9:1629066..1630136Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 1629067..1630136 -
1690881223.4066608-UTR-C-linearis_contig9:1629066..16301361690881223.4066608-UTR-C-linearis_contig9:1629066..1630136Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 1629067..1630136 -
1622930737.6131167-UTR-C-linearis_contig9:1632070..16321771622930737.6131167-UTR-C-linearis_contig9:1632070..1632177Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 1632071..1632177 -
1690881223.4451644-UTR-C-linearis_contig9:1632070..16321771690881223.4451644-UTR-C-linearis_contig9:1632070..1632177Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 1632071..1632177 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930737.4400594-CDS-C-linearis_contig9:1630136..16305801622930737.4400594-CDS-C-linearis_contig9:1630136..1630580Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1630137..1630580 -
1690881223.417103-CDS-C-linearis_contig9:1630136..16305801690881223.417103-CDS-C-linearis_contig9:1630136..1630580Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1630137..1630580 -
1622930737.4596-CDS-C-linearis_contig9:1631175..16313701622930737.4596-CDS-C-linearis_contig9:1631175..1631370Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1631176..1631370 -
1690881223.4272501-CDS-C-linearis_contig9:1631175..16313701690881223.4272501-CDS-C-linearis_contig9:1631175..1631370Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1631176..1631370 -
1622930737.5183158-CDS-C-linearis_contig9:1631890..16320701622930737.5183158-CDS-C-linearis_contig9:1631890..1632070Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1631891..1632070 -
1690881223.4362757-CDS-C-linearis_contig9:1631890..16320701690881223.4362757-CDS-C-linearis_contig9:1631890..1632070Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1631891..1632070 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig9.16585.1

>prot_C-linearis_contig9.16585.1 ID=prot_C-linearis_contig9.16585.1|Name=mRNA_C-linearis_contig9.16585.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=273bp
MPENFDSLPWVVAAIVANIAAGLLAIWWWRGMGKSGRSSGGQDAKKSLPH
TPGVRVVCVQDSSTESSNDGWESSGNGGRSKGSEASKWEQSKQKGSLGYY
FAHHITMKELAPEDYQMNGPRLLSKGDPAASAATNGASASNGSSPPTTTK
RRRPQQVTSYSWEDHGEEARLTFRQSDWEWAKVEAEEIRVEWGPRRFRMS
IDSRYEYFSSCRWKDSCNRMVSAAFPVGQLWVRRWWCCCFSHRARGMCRF
VLCFVLLNVAGWVLFQLRFWVL*
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mRNA from alignment at C-linearis_contig9:1629067..1632177-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig9.16585.1 ID=mRNA_C-linearis_contig9.16585.1|Name=mRNA_C-linearis_contig9.16585.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3111bp|location=Sequence derived from alignment at C-linearis_contig9:1629067..1632177- (Chordaria linearis ClinC8C monoicous)
CAGCTGCCGAGGTGGGTAGGCATAGAGTGCGTAGATGCATATATGGTTCA
TGGTTCACACCTCATATCCTTCGTAGGAGAAGCTTGGACACGAAAGCTAC
GGAAGCGATGCCCGAAAACTTTGACTCTCTGCCGTGGGTAGTCGCGGCCA
TCGTCGCCAATATCGCCGCCGGCTTGCTGGCGATATGGTGGTGGCGAGGC
ATGGGGAAGAGTGGCCGCAGTAGTGGCGGGCAAGACGCCAAGAAGTCTTT
GCCCCATACTCCTGGTGTTCGAGTCGTCTGCGTTCAGGTGTGCGCGAGAG
AAGGAGACGATACGAAATATGCGGAGGAACGCGCTCTAGACCGGACACAT
CTGCGGCGAGTTTTCGGTGTATTGAGACATTCAAGACCGAAAGCGGGCAA
GACAAGCACTCCGAAATCCTCGAACTGTTGTCATTGTTGGTATGATGTGA
TGCAGCGTTTTTGTTCTCGTTCGTCGGTTGGTGTTTCTAACGGTGTCATG
TGCACCAAGTTGTGTGCACCCCAGAACAGAACATATTCGCCACATGCGTC
GTTTGTTGTGGGAGAGATGGTCAAAGGTGCGGGGAGGGTAGACTGCTGTA
GTTACCAGATACACGCGTTAATCGATGTTCCTTCGGACGAGCGAACAAGT
AATTTATCTATGCACACGGCTAAGGGTTGAATCCATCGGTTCGTAGTCGA
ACGTGATTTTTCAAAAAGCGTCCGAAGAAACAAGTGCGAAACACCACCTC
CTTACAATACAGCCATGACAATTTACAATTTCTACACCTTTTGACTGCTC
GCTGCAGGACTCTTCGACCGAGAGCTCGAACGACGGCTGGGAGTCATCAG
GAAACGGCGGTCGCTCGAAAGGCAGTGAGGCCAGCAAATGGGAACAGAGC
AAGCAGAAGGGTAGCTTGGGGTACTACTTCGCGCACCACATCACCATGAA
GGAGCTCGCCCCGGAGGACTATCAGATGAACGGCCCCAGGCTTCTGAGCA
AGGTACATACACCACGGATAGAGACAGGTCGGCAACTTTTCCAGCCCCTC
GCGCACGTAGTGAGCGAAACTTTAGCTGAAGGGTTAGGTTTCAGAGCGCG
CCTTGTGTATTGTGTGTCGCATGACATCTGGCGAGTCGAGTTAGGGCTGC
GTCGTTCTCATGGTGTTTTTTGTACTCGAGGAGGGTGCTTTCTCTTGCCG
ATGTTCAGCATCACTGGGAAGCGAGATGGTGAATTGTTCGGCGGGGGGTC
GGAACATGGGCCGCCACGGGGTGTTTTTTGGGTAGGAGTGTGCCTGTTTC
TGTTTTGTAGTCAACCATTTACTTTCCAGAGAATGTTGGCCTCCTTTCGC
TTGTCGCCGGTGCTCAGCTCTGCTACGGCTGACCTAGCGCTGTGTTCCAG
GTATGTACCTAGGTGGCTCTCATTTTGGATGCTCACTGATCTTCGGAGAT
TAGCACCACCCTCGGCCGCTCGAGAAGTTTTTGCCCAAATTGTTTCAAGA
AAAACTCCGTCGTCCAAAGCACTGCCTCCCATCCCCCTTTCCTCTCGCCG
GCAAAACGCCCGCGGTATACCAATCCCCGGAAAAAATACATCACCAGGGT
GATCCCGCCGCTTCCGCCGCAACAAACGGCGCATCAGCGTCCAACGGGAG
CTCACCCCCGACGACGACCAAGCGACGGCGGCCGCAGCAAGTCACGTCCT
ACTCTTGGGAGGACCACGGAGAGGAGGCTCGGCTGACGTTCCGGCAGTCC
GACTGGGAGTGGGCCAAGGTGGAGGCGGAGGAGATACGGGTCGAGTGGGG
TCCTCGGCGGTTCCGGATGTCCATCGATAGCAGGTATGAGTACTTTTCAA
GCTGCCGGTGGAAAGACAGCTGTAATAGAATGGTGTCCGCGGCTTTTCCT
GTCGGTCAACTTTGGGTCCGCCGCTGGTGGTGTTGTTGTTTTTCTCATCG
GGCACGTGGGATGTGCAGATTTGTCTTGTGTTTTGTGCTTTTGAACGTGG
CAGGGTGGGTCCTTTTTCAGCTGAGGTTTTGGGTGTTGTAATTTTGTTGG
GTGTCTACATATCTGATATGCAACAGCAATGGGGAAACATTTAACGTTGG
TAGATGTAGGCGACACACTCGGAATGCCCCGTCATGAGCTGCAAGCTCCA
GGAGCCAACGCCCATGTTCAAGTAGGCCAACGATACTTCCTACAAGTATT
CCCCGCCAGCAATCGACAACCTCTCGTGCGCTCTCTTGGCTTGACCGATA
TTGGCGCGACTCTGAACATGCCTCATGCGCGTCGAGCCAACGTACCAGCC
GAACCGTTCACGTACAGAGAATACGGGCTCCACGCTATCGACCTGCAGAG
GTTGAACGGCGATGTGGCGGGCGTGCGGGTCCGAAAGCTCAAGAGCCGGC
TGGTGGTGGCCCTGGTTAAGGCGAAACGGGGAAGCTACAGCAGGGCATCG
CCCTGGACTAAGCTGCAAGCCGCTCCTGAAAAGCCTAGCGACTGACGCCG
GCCGTGTTTTGTGGCGTTGGAGGTCCGTTTTGTTTTGTGTGAACAGCTTC
ATTCTGTTCGGACTTTTTTGTTGGAACCGCTGTTTGCGTCGCTTTGGACA
TCTTGGATCTTGAGGCCCCACACACATCTGTAGGGACGTGTGGCTGAATG
GCATGGCCGGTGGTGTAAACCCCGGGAGGGGGGTAATTTCCCGGCCAAAG
CTGGGGCACAACAATAGAATCATTGAGAGAGTACTGTCCTGGTTGGTGGT
ATTCATATGTGTAGTTCTTTTGTGATGTTGTCTTTCGTGTTTTCTAGAAG
GTGGTTGTTTTTCGTCCTTGCTGGCGTTTGTTGCGTGTGTACGGATTTTT
CTGAGACCTTGAAGTGTTTTGCCCTTAGATACAGCTACGTCGTGTGTTCT
ACTTCCCCATATCCCCATGTGGGACTAGTTAACACCTGTGACGAAGGAAG
GCGTGCGCATCAGTTGGACCAGAAAGGACATTTGAAGGGACTGAGCGGAG
GTCGGAATCGAAACGGAAATCTGGATGTGCGAGACATCAACTACAACGCC
ACCCTCCGGGACAGCATCCCTTTAAAGAAAAGCCTCAGGAAGCTTTTGAG
GCTATAAGCGG
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Coding sequence (CDS) from alignment at C-linearis_contig9:1629067..1632177-

>mRNA_C-linearis_contig9.16585.1 ID=mRNA_C-linearis_contig9.16585.1|Name=mRNA_C-linearis_contig9.16585.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1638bp|location=Sequence derived from alignment at C-linearis_contig9:1629067..1632177- (Chordaria linearis ClinC8C monoicous)
ATGCCCGAAAACTTTGACTCTCTGCCGTGGGTAGTCGCGGCCATCGTCGC
CAATATCGCCGCCGGCTTGCTGGCGATATGGTGGTGGCGAGGCATGGGGA
AGAGTGGCCGCAGTAGTGGCGGGCAAGACGCCAAGAAGTCTTTGCCCCAT
ACTCCTGGTGTTCGAGTCGTCTGCGTTCAGATGCCCGAAAACTTTGACTC
TCTGCCGTGGGTAGTCGCGGCCATCGTCGCCAATATCGCCGCCGGCTTGC
TGGCGATATGGTGGTGGCGAGGCATGGGGAAGAGTGGCCGCAGTAGTGGC
GGGCAAGACGCCAAGAAGTCTTTGCCCCATACTCCTGGTGTTCGAGTCGT
CTGCGTTCAGGACTCTTCGACCGAGAGCTCGAACGACGGCTGGGAGTCAT
CAGGAAACGGCGGTCGCTCGAAAGGCAGTGAGGCCAGCAAATGGGAACAG
AGCAAGCAGAAGGGTAGCTTGGGGTACTACTTCGCGCACCACATCACCAT
GAAGGAGCTCGCCCCGGAGGACTATCAGATGAACGGCCCCAGGCTTCTGA
GCAAGGACTCTTCGACCGAGAGCTCGAACGACGGCTGGGAGTCATCAGGA
AACGGCGGTCGCTCGAAAGGCAGTGAGGCCAGCAAATGGGAACAGAGCAA
GCAGAAGGGTAGCTTGGGGTACTACTTCGCGCACCACATCACCATGAAGG
AGCTCGCCCCGGAGGACTATCAGATGAACGGCCCCAGGCTTCTGAGCAAG
GGTGATCCCGCCGCTTCCGCCGCAACAAACGGCGCATCAGCGTCCAACGG
GAGCTCACCCCCGACGACGACCAAGCGACGGCGGCCGCAGCAAGTCACGT
CCTACTCTTGGGAGGACCACGGAGAGGAGGCTCGGCTGACGTTCCGGCAG
TCCGACTGGGAGTGGGCCAAGGTGGAGGCGGAGGAGATACGGGTCGAGTG
GGGTCCTCGGCGGTTCCGGATGTCCATCGATAGCAGGTATGAGTACTTTT
CAAGCTGCCGGTGGAAAGACAGCTGTAATAGAATGGTGTCCGCGGCTTTT
CCTGTCGGTCAACTTTGGGTCCGCCGCTGGTGGTGTTGTTGTTTTTCTCA
TCGGGCACGTGGGATGTGCAGATTTGTCTTGTGTTTTGTGCTTTTGAACG
TGGCAGGGTGGGTCCTTTTTCAGCTGAGGTTTTGGGTGTTGTAAGGTGAT
CCCGCCGCTTCCGCCGCAACAAACGGCGCATCAGCGTCCAACGGGAGCTC
ACCCCCGACGACGACCAAGCGACGGCGGCCGCAGCAAGTCACGTCCTACT
CTTGGGAGGACCACGGAGAGGAGGCTCGGCTGACGTTCCGGCAGTCCGAC
TGGGAGTGGGCCAAGGTGGAGGCGGAGGAGATACGGGTCGAGTGGGGTCC
TCGGCGGTTCCGGATGTCCATCGATAGCAGGTATGAGTACTTTTCAAGCT
GCCGGTGGAAAGACAGCTGTAATAGAATGGTGTCCGCGGCTTTTCCTGTC
GGTCAACTTTGGGTCCGCCGCTGGTGGTGTTGTTGTTTTTCTCATCGGGC
ACGTGGGATGTGCAGATTTGTCTTGTGTTTTGTGCTTTTGAACGTGGCAG
GGTGGGTCCTTTTTCAGCTGAGGTTTTGGGTGTTGTAA
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