prot_C-linearis_contig9.16539.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig9.16539.1
Unique Nameprot_C-linearis_contig9.16539.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length225
Homology
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BLAST of mRNA_C-linearis_contig9.16539.1 vs. uniprot
Match: D7FQX7_ECTSI (FeThRed_A domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQX7_ECTSI)

HSP 1 Score: 258 bits (660), Expect = 2.050e-84
Identity = 130/185 (70.27%), Postives = 154/185 (83.24%), Query Frame = 0 
Query:   23 LVFISSRADAFVARGQQPLVRASHRLHGPGRAVTSVSKDPRPKVLMVSNQDGVLVDEFGIPIYDENGEINEDQLDDYQRNPEGVQVGDKITVIGKGLRFYHVRKFQEEGFDPEGFVGEITNLYITSKKYEGEFSTAHRPVVCSFTQPYKFKAHMEFGEVRKSTPEEIAKNEQDIADQKALNDAER 207
            LVF SS A+AF+  G+ PLV+A +RLHG  RA T V + PR +VLMVSNQDGVL+DEFGIPIYDENGEIN+DQLDDYQ+NP+G++ GD ITVI KGL FYHVR   ++GFDPEG VG+I++LYI SKKYEGEFSTAHRPVVC+FT P KFKAH+EFGEVRK+TPEEI KN+Q I  Q AL+  E+
Sbjct:   12 LVFFSSHAEAFITNGRAPLVQACYRLHG--RAATPVPRAPRSRVLMVSNQDGVLMDEFGIPIYDENGEINDDQLDDYQKNPDGLKEGDPITVIAKGLTFYHVRG-HKDGFDPEGCVGQISSLYIMSKKYEGEFSTAHRPVVCTFTHPKKFKAHLEFGEVRKATPEEIEKNQQLIDAQNALDAIEQ 193
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BLAST of mRNA_C-linearis_contig9.16539.1 vs. uniprot
Match: A0A835YNN2_9STRA (FeThRed_A domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNN2_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.180e-20
Identity = 41/87 (47.13%), Postives = 61/87 (70.11%), Query Frame = 0 
Query:   98 DYQRNPEGVQVGDKITVIGKGLRFYHVRKFQEEGFDPEGFVGEITNLYITSKKYEGEFSTAHRPVVCSFTQPYKFKAHMEFGEVRKS 184
            D+Q NP+G++VG  + V+    RFYH+++F++EG D  GF G I  + +TSKK   E  TA+RPV+ +FT+PYKF AH EF E+ ++
Sbjct:   30 DFQDNPQGLEVGQSVRVLAMEQRFYHIQQFKDEGLDATGFEGVIKEIKLTSKKTGAEI-TANRPVLVTFTEPYKFIAHFEFEELERA 115
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BLAST of mRNA_C-linearis_contig9.16539.1 vs. uniprot
Match: A0A7S3TQW1_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3TQW1_9SPIT)

HSP 1 Score: 52.4 bits (124), Expect = 2.560e-5
Identity = 30/81 (37.04%), Postives = 49/81 (60.49%), Query Frame = 0 
Query:  108 VGDKITVIGKGLRFYHVRKFQEEGFDPEGFVGEITNLYITSKKYEGEFSTAHRPVVCSFTQPYKFKAHMEFGEVRKSTPEE 188
            VGD++ V+ +   F+HV K  ++GF  +G  G +  +Y   K+   + S  H PVV SF++P K+KAH EF E+  ++ +E
Sbjct:   31 VGDEVKVLSEAT-FFHVPK-NKDGFVAKGLTGVVERVYQPEKE---KLSPVH-PVVVSFSEPTKWKAHFEFEELALASSDE 105
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16539.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FQX7_ECTSI2.050e-8470.27FeThRed_A domain-containing protein n=2 Tax=Ectoca... [more]
A0A835YNN2_9STRA1.180e-2047.13FeThRed_A domain-containing protein n=1 Tax=Tribon... [more]
A0A7S3TQW1_9SPIT2.560e-537.04Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 198..224
NoneNo IPR availableGENE3D2.30.30.50coord: 106..183
e-value: 3.3E-7
score: 31.9
IPR004207Ferredoxin thioredoxin reductase, alpha chainPFAMPF02941FeThRed_Acoord: 108..177
e-value: 2.1E-7
score: 31.0
IPR008990Electron transport accessory-like domain superfamilySUPERFAMILY50090Electron transport accessory proteinscoord: 107..181

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:1203720..1205775 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16539.1mRNA_C-linearis_contig9.16539.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig9 1203114..1205955 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig9.16539.1 ID=prot_C-linearis_contig9.16539.1|Name=mRNA_C-linearis_contig9.16539.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=225bp
MQLGLTPLIPRSVSLSPSQRTILVFISSRADAFVARGQQPLVRASHRLHG
PGRAVTSVSKDPRPKVLMVSNQDGVLVDEFGIPIYDENGEINEDQLDDYQ
RNPEGVQVGDKITVIGKGLRFYHVRKFQEEGFDPEGFVGEITNLYITSKK
YEGEFSTAHRPVVCSFTQPYKFKAHMEFGEVRKSTPEEIAKNEQDIADQK
ALNDAERAKRDAARAAEEAAKKAE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004207Fd_thioredoxin_Rdtase_alpha
IPR008990Elect_transpt_acc-like_dom_sf