mRNA_C-linearis_contig9.16539.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig9.16539.1
Unique NamemRNA_C-linearis_contig9.16539.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig9.16539.1 vs. uniprot
Match: D7FQX7_ECTSI (FeThRed_A domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQX7_ECTSI)

HSP 1 Score: 258 bits (660), Expect = 1.210e-80
Identity = 130/185 (70.27%), Postives = 154/185 (83.24%), Query Frame = 1 
Query:  247 LVFISSRADAFVARGQQPLVRASHRLHGPGRAVTSVSKDPRPKVLMVSNQDGVLVDEFGIPIYDENGEINEDQLDDYQRNPEGVQVGDKITVIGKGLRFYHVRKFQEEGFDPEGFVGEITNLYITSKKYEGEFSTAHRPVVCSFTQPYKFKAHMEFGEVRKSTPEEIAKNEQDIADQKALNDAER 801
            LVF SS A+AF+  G+ PLV+A +RLHG  RA T V + PR +VLMVSNQDGVL+DEFGIPIYDENGEIN+DQLDDYQ+NP+G++ GD ITVI KGL FYHVR   ++GFDPEG VG+I++LYI SKKYEGEFSTAHRPVVC+FT P KFKAH+EFGEVRK+TPEEI KN+Q I  Q AL+  E+
Sbjct:   12 LVFFSSHAEAFITNGRAPLVQACYRLHG--RAATPVPRAPRSRVLMVSNQDGVLMDEFGIPIYDENGEINDDQLDDYQKNPDGLKEGDPITVIAKGLTFYHVRG-HKDGFDPEGCVGQISSLYIMSKKYEGEFSTAHRPVVCTFTHPKKFKAHLEFGEVRKATPEEIEKNQQLIDAQNALDAIEQ 193
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BLAST of mRNA_C-linearis_contig9.16539.1 vs. uniprot
Match: A0A835YNN2_9STRA (FeThRed_A domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNN2_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 4.420e-19
Identity = 41/87 (47.13%), Postives = 61/87 (70.11%), Query Frame = 1 
Query:  472 DYQRNPEGVQVGDKITVIGKGLRFYHVRKFQEEGFDPEGFVGEITNLYITSKKYEGEFSTAHRPVVCSFTQPYKFKAHMEFGEVRKS 732
            D+Q NP+G++VG  + V+    RFYH+++F++EG D  GF G I  + +TSKK   E  TA+RPV+ +FT+PYKF AH EF E+ ++
Sbjct:   30 DFQDNPQGLEVGQSVRVLAMEQRFYHIQQFKDEGLDATGFEGVIKEIKLTSKKTGAEI-TANRPVLVTFTEPYKFIAHFEFEELERA 115
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BLAST of mRNA_C-linearis_contig9.16539.1 vs. uniprot
Match: A0A7S3TQW1_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3TQW1_9SPIT)

HSP 1 Score: 52.4 bits (124), Expect = 8.900e-5
Identity = 30/81 (37.04%), Postives = 49/81 (60.49%), Query Frame = 1 
Query:  502 VGDKITVIGKGLRFYHVRKFQEEGFDPEGFVGEITNLYITSKKYEGEFSTAHRPVVCSFTQPYKFKAHMEFGEVRKSTPEE 744
            VGD++ V+ +   F+HV K  ++GF  +G  G +  +Y   K+   + S  H PVV SF++P K+KAH EF E+  ++ +E
Sbjct:   31 VGDEVKVLSEAT-FFHVPK-NKDGFVAKGLTGVVERVYQPEKE---KLSPVH-PVVVSFSEPTKWKAHFEFEELALASSDE 105
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16539.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FQX7_ECTSI1.210e-8070.27FeThRed_A domain-containing protein n=2 Tax=Ectoca... [more]
A0A835YNN2_9STRA4.420e-1947.13FeThRed_A domain-containing protein n=1 Tax=Tribon... [more]
A0A7S3TQW1_9SPIT8.900e-537.04Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:1203114..1205955 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-09_003360.1
Exons4
Model size1461
Cds size675
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16539.1prot_C-linearis_contig9.16539.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig9 1203720..1205775 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930728.8754704-UTR-C-linearis_contig9:1203113..12037191622930728.8754704-UTR-C-linearis_contig9:1203113..1203719Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 1203114..1203719 -
1690881218.8553174-UTR-C-linearis_contig9:1203113..12037191690881218.8553174-UTR-C-linearis_contig9:1203113..1203719Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 1203114..1203719 -
1622930728.969703-UTR-C-linearis_contig9:1205775..12059551622930728.969703-UTR-C-linearis_contig9:1205775..1205955Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 1205776..1205955 -
1690881218.916003-UTR-C-linearis_contig9:1205775..12059551690881218.916003-UTR-C-linearis_contig9:1205775..1205955Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 1205776..1205955 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930728.8901813-CDS-C-linearis_contig9:1203719..12038931622930728.8901813-CDS-C-linearis_contig9:1203719..1203893Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1203720..1203893 -
1690881218.870904-CDS-C-linearis_contig9:1203719..12038931690881218.870904-CDS-C-linearis_contig9:1203719..1203893Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1203720..1203893 -
1622930728.9090028-CDS-C-linearis_contig9:1204344..12044611622930728.9090028-CDS-C-linearis_contig9:1204344..1204461Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1204345..1204461 -
1690881218.8814747-CDS-C-linearis_contig9:1204344..12044611690881218.8814747-CDS-C-linearis_contig9:1204344..1204461Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1204345..1204461 -
1622930728.9253829-CDS-C-linearis_contig9:1205103..12053091622930728.9253829-CDS-C-linearis_contig9:1205103..1205309Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1205104..1205309 -
1690881218.897434-CDS-C-linearis_contig9:1205103..12053091690881218.897434-CDS-C-linearis_contig9:1205103..1205309Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1205104..1205309 -
1622930728.9475176-CDS-C-linearis_contig9:1205597..12057751622930728.9475176-CDS-C-linearis_contig9:1205597..1205775Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1205598..1205775 -
1690881218.9065309-CDS-C-linearis_contig9:1205597..12057751690881218.9065309-CDS-C-linearis_contig9:1205597..1205775Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1205598..1205775 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig9.16539.1

>prot_C-linearis_contig9.16539.1 ID=prot_C-linearis_contig9.16539.1|Name=mRNA_C-linearis_contig9.16539.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=225bp
MQLGLTPLIPRSVSLSPSQRTILVFISSRADAFVARGQQPLVRASHRLHG
PGRAVTSVSKDPRPKVLMVSNQDGVLVDEFGIPIYDENGEINEDQLDDYQ
RNPEGVQVGDKITVIGKGLRFYHVRKFQEEGFDPEGFVGEITNLYITSKK
YEGEFSTAHRPVVCSFTQPYKFKAHMEFGEVRKSTPEEIAKNEQDIADQK
ALNDAERAKRDAARAAEEAAKKAE*
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mRNA from alignment at C-linearis_contig9:1203114..1205955-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig9.16539.1 ID=mRNA_C-linearis_contig9.16539.1|Name=mRNA_C-linearis_contig9.16539.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2842bp|location=Sequence derived from alignment at C-linearis_contig9:1203114..1205955- (Chordaria linearis ClinC8C monoicous)
GCCGACCCCCGCGCGGCATGCTTGATTTCGCGTTATCGTCCTCTTTTCTC
TTGTCCCTCATCATGCGGCCAGGGTTGATTCTTCCAGCTTCCCTTGTGGG
GTGAGACGCTGGTGGTGTTCCATTGCGGGGTCGGTATCCACCGGCGTGCT
TATTCATACCATTTCCGTCTGTTCAGGATCATGCAACTTGGACTGACTCC
TCTGATCCCTCGGTCTGTCTCTCTCTCCCCCTCTCAAAGGACCATCCTGG
TGTTTATCTCGAGCCGTGCTGATGCGTTTGTCGCAAGAGGGCAGCAACCA
TTGGTGCGGGCTAGCCATCGACTGCATGGCCCCGGCAGAGCAGTCACATC
GGTGTCAAGTAAGCTATGTCGCTGCCCCCCCGCAGACTTACCACAACATG
CGCGGTGCGGCGTTGTCGCCTACTCTATGGTGGCCTATGGTTTAGACTCC
GGTCCTAGTCTGTAGTACTCCGGAACCGGCTGTGTGCTACAGCATGAGAT
ACAGCAGTACGTGAAGTGCGTGCGTGATATAATAGTATGCGTAACAGCAG
TGCTCACCTTCATGACGCCACAGGCTCAACACAGGCTCAACACGTACGCT
CACCTTGCACACGGCGTCGGCGTATTTACCTCTTGATGTTTTACAGAGGA
CCCTCGCCCGAAGGTTTTGATGGTGTCGAATCAAGATGGGGTGCTGGTAG
ATGAGTTCGGTATCCCCATTTACGACGAAAACGGAGAAATCAACGAAGAC
CAGTTGGACGACTACCAGAGGAACCCGGAAGGAGTGCAGGTGGGGGACAA
GATTACAGTCATCGGGAAGGGGCTCAGGTTCTACCATGTCCGGAAGTTCC
AGGTGAGATGGCGAGGTATTGCTACAGGAGTGGACAGGGTTCCCTATTGT
TCAGGGTAGCTAGAAGTAGAGACGAGTAGGCGTATCGGCACTCCGGCTTT
TATTCCACGGATATTGCGTCCCACTTTTCTATGCGTTCGGCCATTGGCGA
GTGCGTGTGGAACCTTTACTGCTGTATTTAGCCGTGAAATCCGCCTCTAG
AGAGTGGCAAATAGTCGGGAGCATTTCACCGCCCGTGACTCTCGGGGATT
CACAGGTGTGAAAATGACACCAAATTTGATAGAATGGCACCATTGGACGA
AAATATGTACGTGAGCGGTGTACCGGTGGCTTGCTCCTCGATGTCTTCTT
GTACACATCCTTCTCTCGTTCACCCATCCGCTGCACCCCTTGCATTTCCT
GTTCCCTAGAGTGTAGCAGTGCAGCTTTCTTTGCTCTCTACTCCGTACAA
CAATCAAAGTTGTGCCCGTTCAGCTGATCGACAAAGCGCAAACACACGAT
ATTGTGTTACGATACGAGTTCAGGTTCTCGTCGCAGTGCTTGATAGTGCC
GTGCAAAACTCATGTAACATTCCATGCCACGGTTTGATCGTGTTTCACCA
CTGGGATCTTGTTTTCTCATCGTCGGCGATGACCACGATTGCAGGAGGAG
GGGTTTGATCCGGAGGGGTTCGTTGGGGAGATCACGAACTTGTACATCAC
GAGCAAGAAGTACGAGGGAGAATTTTCCACCGCGCACAGGCCCGTTGTGT
GCTCCTTCACGGTGAGCTGTGAGCTGCATTTCTGACCTATTCATCTACTC
CCGTTCGCACAAGTTTGTACGCAGGCGCCGTGCGTGCGATTGCGGACCAT
TCATGGGCAGGACATATTTTCCATGAATATTATTTTTGGAGATTATTTTC
GCCAGCAGTTTCCGTCTCGTTGGTGAAGGCTATGGTGCGCAGAAAGAACG
AGCAACAGCACCAGCAGCGATGTGATAAAGGGGGTATCCGTTCGCCGTTC
ACTGCTGAGCGAAAGTTTTGCAAAACTCGACTACTTGCGGATGGTGGTTG
TTAACTCTCAGCGATGATAACCACGGTGTTGATTGATTGCGCTTGCACCC
GGACGGTACTCTCAGCACGAGTGACATCACTCATTTAGAGAGAAAATGTT
GATGTTCACCTCATCACCCTTTCCTTGCAACCCTCACATCGGCGTGTTGG
ATGGATTGGCAGCAACCATACAAATTCAAGGCTCACATGGAGTTTGGGGA
GGTGAGGAAATCCACGCCAGAGGAGATCGCGAAGAACGAGCAGGATATTG
CTGACCAGAAAGCGTTGAATGACGCAGAGAGAGCGAAGAGAGACGCAGCC
AGGGCCGCCGAAGAGGCGGCGAAGAAAGCGGAATAGAACCAAGTGGGAGG
CGAAGACTCGACGCGGGTGTTGTACGCCCAAGGCTCTCGTGGGCCTTGTT
ATTGAAGCGTGAGACGTGTCCATCCACGACGCGGTGGCGAAATTATTTAG
ACCTCGTCCCGGCGAGTCCGTTCGTTCATGTTTCGTGTTTCGATTGCGTA
GGTGTGTGACTTGTTGCAAGCATGGGGCCGACTTGAAGGGTTGCTCGAAC
TGGGTTCCCGAGGAGGAGTCACGTTTTCATTTTTCCGTTTTTGTGTCGTT
TTTGCAGAGCTAATTTCAAAATAGAGGTACCATACATACGCACATGGTAC
AGGTGACCTCCGCGGTGTCGCCGGCGGGGGGGTTGAATGTAGAGAGGTTC
ACGTTGATGACAATCGGAGGATCAACGCGATATAGTTTCTCGCTCTCCGT
GCTGTAGACAACTAGAGAGTAGCCCGTAGTTTCTCTGGTGCGAACGCCTG
GTTCTGGTTGTATACCGTGCCGCGGCCCTGGTGCAATGACACCCGCCCCC
ACCCGCTACTGCTACAACAATCGACAGTGCATGTCCTACGCTGGCTCCGT
CACGGCCGTTGCAGGCAAAGCAAAAAAATAGCTCTTTCGCAT
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Coding sequence (CDS) from alignment at C-linearis_contig9:1203114..1205955-

>mRNA_C-linearis_contig9.16539.1 ID=mRNA_C-linearis_contig9.16539.1|Name=mRNA_C-linearis_contig9.16539.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1350bp|location=Sequence derived from alignment at C-linearis_contig9:1203114..1205955- (Chordaria linearis ClinC8C monoicous)
ATGCAACTTGGACTGACTCCTCTGATCCCTCGGTCTGTCTCTCTCTCCCC
CTCTCAAAGGACCATCCTGGTGTTTATCTCGAGCCGTGCTGATGCGTTTG
TCGCAAGAGGGCAGCAACCATTGGTGCGGGCTAGCCATCGACTGCATGGC
CCCGGCAGAGCAGTCACATCGGTGTCAAATGCAACTTGGACTGACTCCTC
TGATCCCTCGGTCTGTCTCTCTCTCCCCCTCTCAAAGGACCATCCTGGTG
TTTATCTCGAGCCGTGCTGATGCGTTTGTCGCAAGAGGGCAGCAACCATT
GGTGCGGGCTAGCCATCGACTGCATGGCCCCGGCAGAGCAGTCACATCGG
TGTCAAAGGACCCTCGCCCGAAGGTTTTGATGGTGTCGAATCAAGATGGG
GTGCTGGTAGATGAGTTCGGTATCCCCATTTACGACGAAAACGGAGAAAT
CAACGAAGACCAGTTGGACGACTACCAGAGGAACCCGGAAGGAGTGCAGG
TGGGGGACAAGATTACAGTCATCGGGAAGGGGCTCAGGTTCTACCATGTC
CGGAAGTTCCAGAGGACCCTCGCCCGAAGGTTTTGATGGTGTCGAATCAA
GATGGGGTGCTGGTAGATGAGTTCGGTATCCCCATTTACGACGAAAACGG
AGAAATCAACGAAGACCAGTTGGACGACTACCAGAGGAACCCGGAAGGAG
TGCAGGTGGGGGACAAGATTACAGTCATCGGGAAGGGGCTCAGGTTCTAC
CATGTCCGGAAGTTCCAGGAGGAGGGGTTTGATCCGGAGGGGTTCGTTGG
GGAGATCACGAACTTGTACATCACGAGCAAGAAGTACGAGGGAGAATTTT
CCACCGCGCACAGGCCCGTTGTGTGCTCCTTCACGGAGGAGGGGTTTGAT
CCGGAGGGGTTCGTTGGGGAGATCACGAACTTGTACATCACGAGCAAGAA
GTACGAGGGAGAATTTTCCACCGCGCACAGGCCCGTTGTGTGCTCCTTCA
CGCAACCATACAAATTCAAGGCTCACATGGAGTTTGGGGAGGTGAGGAAA
TCCACGCCAGAGGAGATCGCGAAGAACGAGCAGGATATTGCTGACCAGAA
AGCGTTGAATGACGCAGAGAGAGCGAAGAGAGACGCAGCCAGGGCCGCCG
AAGAGGCGGCGAAGAAAGCGGAATAGCAACCATACAAATTCAAGGCTCAC
ATGGAGTTTGGGGAGGTGAGGAAATCCACGCCAGAGGAGATCGCGAAGAA
CGAGCAGGATATTGCTGACCAGAAAGCGTTGAATGACGCAGAGAGAGCGA
AGAGAGACGCAGCCAGGGCCGCCGAAGAGGCGGCGAAGAAAGCGGAATAG
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