prot_C-linearis_contig89.16434.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig89.16434.1
Unique Nameprot_C-linearis_contig89.16434.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length274
Homology
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BLAST of mRNA_C-linearis_contig89.16434.1 vs. uniprot
Match: D7FVA5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVA5_ECTSI)

HSP 1 Score: 192 bits (487), Expect = 7.730e-57
Identity = 109/164 (66.46%), Postives = 122/164 (74.39%), Query Frame = 0 
Query:    1 MAEGFTAVDYATDVRLSEVKGKRLWLVRVPRHIDPARLEGAKVKLPVRKGREGKVLGRVTKAGDDGD-DIDQEDGGEGEEDLVVRAADVAESAGFRALFSADEDRPLIAAGPFAGQLNVSVETADLEPVGLEDHAPVATFVEPYRGRPQLKGMRVRSKPAGAGS 163
            MAEGFTA DY T + LSEV+GKRLWL+RVPRHID +RLEG KVKLP RKGREGKVLGR  K  D  D D D+E G    EDL +RA DVAE+ GFRALFSA ED  L AA PF GQ+NVSV+  D++    +    V TFVEPY+GRPQLKGMRVR KPA AGS
Sbjct:    1 MAEGFTAADYVTSLPLSEVQGKRLWLLRVPRHIDTSRLEGVKVKLP-RKGREGKVLGRANKRNDSEDGDSDEEGGNRDGEDLALRAGDVAETHGFRALFSAKEDGALAAAPPFVGQVNVSVDMPDVDASVADGDPRVDTFVEPYQGRPQLKGMRVRYKPARAGS 163
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig89.16434.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVA5_ECTSI7.730e-5766.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013240DNA-directed RNA polymerase I, subunit RPA34.5PFAMPF08208RNA_polI_A34coord: 20..164
e-value: 2.8E-15
score: 57.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig89contigC-linearis_contig89:609629..623011 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig89.16434.1mRNA_C-linearis_contig89.16434.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig89 609605..624704 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig89.16434.1 ID=prot_C-linearis_contig89.16434.1|Name=mRNA_C-linearis_contig89.16434.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=274bp
MAEGFTAVDYATDVRLSEVKGKRLWLVRVPRHIDPARLEGAKVKLPVRKG
REGKVLGRVTKAGDDGDDIDQEDGGEGEEDLVVRAADVAESAGFRALFSA
DEDRPLIAAGPFAGQLNVSVETADLEPVGLEDHAPVATFVEPYRGRPQLK
GMRVRSKPAGAGSGRCRMKRVVAMNSQCYSRTCVCHMLLVHVLQHASTCV
VAYASVAEWFGFCSYVAPANIENVFQVSRRPRGSVAQANVLSFSRKVTCW
SKINVITWPVTTFFVVTAQVPNA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013240DNA-dir_RNA_pol1_su_RPA34