prot_C-linearis_contig89.16407.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig89.16407.1
Unique Nameprot_C-linearis_contig89.16407.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length100
Homology
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BLAST of mRNA_C-linearis_contig89.16407.1 vs. uniprot
Match: D8LH89_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH89_ECTSI)

HSP 1 Score: 157 bits (396), Expect = 8.100e-48
Identity = 85/98 (86.73%), Postives = 90/98 (91.84%), Query Frame = 0 
Query:    2 CASAFIAPSAVKSGSFATPAMRATSTVAPKTTMNMGLEQIVDVLPVVPAEAHNAVLEMADNPLLLSLRADSFGGLIGPIGGCLAVAIFIVVMAPPRVD 99
            CASAFIAPSAVKSGSFATPA+RATS VAPK  M MGLEQI DVLP+VP+EAHNA  EMA+NPLLLS+ ADSFGGLIGPIGGCLAVAIFIVVMAPPRVD
Sbjct:   16 CASAFIAPSAVKSGSFATPAVRATSMVAPK--MTMGLEQIADVLPLVPSEAHNAGFEMANNPLLLSVSADSFGGLIGPIGGCLAVAIFIVVMAPPRVD 111
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig89.16407.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LH89_ECTSI8.100e-4886.73Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 24..72
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..12
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 73..94
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..23
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 95..99
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 13..23
NoneNo IPR availableTMHMMTMhelixcoord: 72..94

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig89contigC-linearis_contig89:317061..319235 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig89.16407.1mRNA_C-linearis_contig89.16407.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig89 314784..319268 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig89.16407.1 ID=prot_C-linearis_contig89.16407.1|Name=mRNA_C-linearis_contig89.16407.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=100bp
MCASAFIAPSAVKSGSFATPAMRATSTVAPKTTMNMGLEQIVDVLPVVPA
EAHNAVLEMADNPLLLSLRADSFGGLIGPIGGCLAVAIFIVVMAPPRVD*
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