mRNA_C-linearis_contig89.16407.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig89.16407.1
Unique NamemRNA_C-linearis_contig89.16407.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig89.16407.1 vs. uniprot
Match: D8LH89_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH89_ECTSI)

HSP 1 Score: 168 bits (425), Expect = 1.600e-45
Identity = 92/110 (83.64%), Postives = 97/110 (88.18%), Query Frame = 1 
Query:    1 KFIAVLLALYAMCASAFIAPSAVKSGSFATPAMRATSTVAPKTTMNMGLEQIVDVLPVVPAEAHNAVLEMADNPLLLSLRADSFGGLIGPIGGCLAVAIFIVVMAPPRVD 330
            K  AVL ALY  CASAFIAPSAVKSGSFATPA+RATS VAPK  M MGLEQI DVLP+VP+EAHNA  EMA+NPLLLS+ ADSFGGLIGPIGGCLAVAIFIVVMAPPRVD
Sbjct:    4 KLFAVLFALYCACASAFIAPSAVKSGSFATPAVRATSMVAPK--MTMGLEQIADVLPLVPSEAHNAGFEMANNPLLLSVSADSFGGLIGPIGGCLAVAIFIVVMAPPRVD 111
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BLAST of mRNA_C-linearis_contig89.16407.1 vs. uniprot
Match: A0A6H5JC00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC00_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 4.090e-9
Identity = 43/60 (71.67%), Postives = 49/60 (81.67%), Query Frame = -1 
Query: 1951 VQVATKDGGVVGTVVQVPYPTRSDAESAMPPAKKEDAS--KGEEAAAALGLEEEKAKEKV 2124
            ++++TK+G  +GTVVQVPYPTRSDAESAMPPAKKE  S  K   AAA LGLEEEKAKEK 
Sbjct:  461 LKLSTKEGESLGTVVQVPYPTRSDAESAMPPAKKEGDSGDKATAAAAVLGLEEEKAKEKA 520
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BLAST of mRNA_C-linearis_contig89.16407.1 vs. uniprot
Match: D8LH90_ECTSI (Folate-binding protein YgfZ n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH90_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 4.100e-9
Identity = 43/60 (71.67%), Postives = 49/60 (81.67%), Query Frame = -1 
Query: 1951 VQVATKDGGVVGTVVQVPYPTRSDAESAMPPAKKEDAS--KGEEAAAALGLEEEKAKEKV 2124
            ++++TK+G  +GTVVQVPYPTRSDAESAMPPAKKE  S  K   AAA LGLEEEKAKEK 
Sbjct:  462 LKLSTKEGEPLGTVVQVPYPTRSDAESAMPPAKKEGDSGDKATAAAAVLGLEEEKAKEKA 521
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig89.16407.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LH89_ECTSI1.600e-4583.64Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JC00_9PHAE4.090e-971.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LH90_ECTSI4.100e-971.67Folate-binding protein YgfZ n=1 Tax=Ectocarpus sil... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig89contigC-linearis_contig89:314784..319268 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-24_001000.1
Exons3
Model size2334
Cds size300
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig89.16407.1prot_C-linearis_contig89.16407.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig89 317061..319235 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930692.4608192-UTR-C-linearis_contig89:314783..3151651622930692.4608192-UTR-C-linearis_contig89:314783..315165Chordaria linearis ClinC8C monoicousUTRC-linearis_contig89 314784..315165 -
1690881199.8147182-UTR-C-linearis_contig89:314783..3151651690881199.8147182-UTR-C-linearis_contig89:314783..315165Chordaria linearis ClinC8C monoicousUTRC-linearis_contig89 314784..315165 -
1622930692.4791365-UTR-C-linearis_contig89:315441..3170601622930692.4791365-UTR-C-linearis_contig89:315441..317060Chordaria linearis ClinC8C monoicousUTRC-linearis_contig89 315442..317060 -
1690881199.8262517-UTR-C-linearis_contig89:315441..3170601690881199.8262517-UTR-C-linearis_contig89:315441..317060Chordaria linearis ClinC8C monoicousUTRC-linearis_contig89 315442..317060 -
1622930692.5327914-UTR-C-linearis_contig89:319235..3192681622930692.5327914-UTR-C-linearis_contig89:319235..319268Chordaria linearis ClinC8C monoicousUTRC-linearis_contig89 319236..319268 -
1690881199.8649683-UTR-C-linearis_contig89:319235..3192681690881199.8649683-UTR-C-linearis_contig89:319235..319268Chordaria linearis ClinC8C monoicousUTRC-linearis_contig89 319236..319268 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930692.498488-CDS-C-linearis_contig89:317060..3173261622930692.498488-CDS-C-linearis_contig89:317060..317326Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 317061..317326 -
1690881199.8369882-CDS-C-linearis_contig89:317060..3173261690881199.8369882-CDS-C-linearis_contig89:317060..317326Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 317061..317326 -
1622930692.5171018-CDS-C-linearis_contig89:319201..3192351622930692.5171018-CDS-C-linearis_contig89:319201..319235Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 319202..319235 -
1690881199.8466709-CDS-C-linearis_contig89:319201..3192351690881199.8466709-CDS-C-linearis_contig89:319201..319235Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 319202..319235 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig89.16407.1

>prot_C-linearis_contig89.16407.1 ID=prot_C-linearis_contig89.16407.1|Name=mRNA_C-linearis_contig89.16407.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=100bp
MCASAFIAPSAVKSGSFATPAMRATSTVAPKTTMNMGLEQIVDVLPVVPA
EAHNAVLEMADNPLLLSLRADSFGGLIGPIGGCLAVAIFIVVMAPPRVD*
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mRNA from alignment at C-linearis_contig89:314784..319268-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig89.16407.1 ID=mRNA_C-linearis_contig89.16407.1|Name=mRNA_C-linearis_contig89.16407.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4485bp|location=Sequence derived from alignment at C-linearis_contig89:314784..319268- (Chordaria linearis ClinC8C monoicous)
AAGTTCATCGCAGTACTCCTCGCCCTCTACGCCATGTGCGCTAGCGCATT
TATCGCCCCCTCAGCCGGTGAGTTTGGTGACGTTGGTTTCCTTCCCTCGC
GTGCCTGCCAAGCACACGTCTGCTCCTGTTCAGTTCATGCATGCCTCGCG
CGGCAGTAGCCCGCAGATTTATCTCCACGTTTGCCCGATAGCCTTAGGAT
TGCCCGTTCTTCTGTGAGGGCTGATTGTGGGGTTCGCGAAAGCCTCATCG
CATTGCCCGGATCGTTTTGTGGAGGGCCTAAAGGAGAGTGTTCACAAACA
TCAAACCGCGCGTGAGGATAGACGGGCTCTTTTATGTTTCCACATGTGCG
GGGTTGCAGAGCTTCGCCGGTGGTGCTCAACCCACATGATGTTGCGTTGC
AACAATCTCTCTGCTCAGGGCTTGGGCGGAAGTGTTAAGTGTGAAGTGTA
GTCTGTCTTTCATGGCGTTCCGGTCGAAAGTTGCAGCTTGTATGTTGAGG
TTACCGTTTTCTCTAAAACCAAGACATTTCTACACGCCACGCACTCACAA
GACGTTGCGGCGTTCAGTGTCTCGTTTACAACACTGGAGAGAATTGCGCA
AAGTTGTGCTATGCTGGTCAATGCGGTGTGATGTCGTGTGTCGCACCATC
CACCCGCCCCGCCTTTTCAGCGCTGTTGCGTGTGAGAGGTTTCCTCTTCT
CTAGACTAAGTGTAGTCTCAGATTTCGCTGTTCTGGAGGATAGCACCCCC
CTTTCTGCTCGCTAGCGCCACCGCCTCCAGTATACATATGTCTGCCCCCC
AAGCGTTTATTCGTCGGCGATGACGACGTACAACCTCCACAATGTACACC
GGCCAATCCATCACCCCATGCTGGGGTTAAATAACGGTTAAGGGGTAGGT
GTGACGAAGGGCCGGCAACTCGTGGAATATCAATATTGTCTCACGGGTTG
GAAGAGAACCGAGATCGTTCTACCCTCCCGTGAGTCGACCCTCCCATGAG
TCAACTTTGTCTGTACAAACATACGAGCGTTCCTCCCCAGCAGTAGCTAC
CCGCCATTGTTCGTAGCCCACGCTCATGTTTGGCATCGTTCGGGTGTCGG
ACGTGGCAAGGGCTGTGCGACTTTTCGCACGAATTTGTACCACTGTTTAT
CTGTTCAAACAGCAGCCAGTTACCAGGCCACATCACCTCACGAAGAAACA
CGAAAGCTCCCGATGCGTGATTAACAATCCTGCGTCCATCTACTGGTGCA
CGTTAAACCAATTCGTGCCCGTCCTCTAGACGCCTGCAGTATGTTGGCAT
CTTCCGTTCATAACATCCTGTAACAATATCAATATTTTCTATCCAAACAA
CCGAAGCCTTTGCTTGGCGCGGTCATGCGTGGTGTGGCGATGAGCAGAGC
AACAGAGCTATTCATGTCAATCTCAGAGGATAGATTGGTATCGCTCCTGG
TCGGTGCTGTTCGCCTGCTTCATGTCGAAGCTGACATATTTTTGGAAAGT
ATGTCGGGTGTCCGGCGAGAGCAACCAATACTCAATACTGCATTGTTTTG
TCCGAGATACAGCTCGAGACACGGCTCTTTCCTCGTCTTCAACGCGGGGT
TGTAAGCACCCACCGATATCCTTTGAATTATTGCGATGTCCCGTTGTGGT
ATCTTTGGTTACATCGGAACGTGTGTCTGCGTCCCAAGTGTATCACTTGT
TGTCTTTCCTTACTTTGTGGCGGGTGACGGTCCTATCCTAATCCATGGCA
TGTCGAAAATACGGTAATGCTGGAAATAAAAGTGAAATGTACGCACTCCA
ATGTTCAGCACCAAACGTATTTACAGCAGTAGCAACCAGATGGATCGCGT
TGCTCATCTCACGAGGTATTTTTCACGCCAGCCCCTTATCCCCCCCCCCC
CCCACCCCTTACACCCGACGCCCGTGTCTGCGCCCCTAACAGTCAAGTCC
GGGTCCTTCGCTACCCCCGCCATGCGCGCGACCTCGACGGTCGCACCCAA
GACGACCATGAACATGGGGCTCGAGCAGATCGTCGACGTCCTCCCCGTCG
TGCCGGCGGAGGCACACAACGCCGTGCTCGAGATGGCAGACAACCCGCTG
CTGCTCTCGCTCAGGGCGGATTCTTTCGGAGGATTGATCGGACCCATCGG
CGGCTGCCTCGCCGTCGCCATCTTCATCGTCGTCATGGCGCCCCCGCGGG
TGGACTAATTTTCTACGACAGTCTCACGTAGTCTTTTTGACTTTTTGTAG
TTTTTTTTTAGGGGAGCGGGGATGGGATCGATCGCCCTTGGTGGTCTTGC
ATGGCCACCTTTTGGTGGGAGTTGAGCTGAACGTGGGGGGCACCCGGTGT
CTTTTTTGGTGGAGTGTCAAACCGAGTAGATAGAGGTTTTGGGGTGGAGG
GGATGGTCTTCCCACTTGAGCATCGGGCATACTCCTATAATGTTACCCGT
TGCCGGCCACTTTTGCGGAGACCAAGGCTTAGGTCAAGTGTTGGGTACTT
GCCCCTTGCCCCGCCCCGTCCCGTCGGTTTGTTTTTTTTGTCCGAGTTCT
TGCGTTTGGCCTTGACTATTTTTGTGGGTAGGACATCTGCAGCATGTCTT
TGCTCTCTACTTTAAATAAGCGATTTGGAATGAAAACAACTTGGCCGCGT
TGTAAGGTGCTTTTGGCTTTTCGTCCAGCTCTTGCCGCATTCGTGGGGAA
CTCAGCTGCCAGTCTTTTCCATGCGTTTCTACATGGTGGCCGTCCAGCCT
AGAACGATTGTAAAGATATAAAAAGACAGGAAAACATTTCACCGGTAGAA
ACAAGGGCAAGCGTCACAGGCAGGACCTGATGCCCCACTACATCTGCTTG
TTGTGGTGTGCTTCTGGATAGGTTGAAATCTGGTATGTGTTCATTGTCAC
TATGCACAACACCAGCCAGTACAAGTATTACATCCCGTCTTCGTTCCGGC
CACTTACTTGATCGATCAGATGTTTCCTGTGGTCAACGGATGCAGTAGAT
GCGTGTGAGACCTTTAAATCACGTGCACCTGAGGCACGGCCTTGAGGAAA
GACTAGTGTGCTTGATTTGATGTCCCCGCTTCTCAGATTGGCTCAGAAGT
TACCGTGTCGCACGTGAAACTGTTGGGTTATTATCTGCTGTGGAACAAAA
AGAGCTTATCTTGCATTTTCATCAACCCTCACCCCAGATTCAGGGAATAA
CGGATATGCCCGTTTCCATTGGCTGCATTCCAAAAAGTTGTACTTCACCA
AAACGGCATATAGTCGCAACTGAAAAATCGCAAATGACCACCCCTCAAGG
GGTATGGGGGAGGGTGAGCTGCGCCTGAGTTTGCCGGGTGCAAGAAAAAC
TGACAGTACACACGAGGAAGACAAAACATACGCACCACTGCTGTACAGGC
TTCCTGCCAACTGTCAAAACCAGCCTTGAACCCCAACCGTACCCCAATCA
GAGCCGGGGCTGTGTGCCTTGGGAAGGTTCCAGGCCGTGTTGCCGGTGAA
ACGCTTACAGCACGGGGGATTGTTCGACGCCTGCCGAGGGAAATAAGCGC
CGTATGCCCCGATTGGTTGTAGTCTCATGTATGCACAAGTAATTTTTCCA
GGGTGATGTGATGTGATGGGGGCAGCGGTTGCAACATGAAGTTCGTCTCA
AGCTTAAGCTTCCAGCGCCTCAAAAGACTTAAATCAAGGAACCACCGCAA
TCCAAATCAACCACAACGCCCTATACGAGCAAATCTTCCATCACGTCTTA
ATTTAGGTGGTCTTTCTTCTAGCCTTCAGGGCGTCAATCTTCTTCTGCAT
GGCCTCCAGCTTGGCGGCCTGACCCAAGCGCCAAAAACAATAATAGCGAG
GGCGGAGGGAGGCGTACGGTTAGCAAACAACACTTGCATGTGTAGGACCG
CTAACCCTCCCGCGAGGCATACCTCTGAAGCTCATCGACGTACATACAAG
TCGTCATACGGATTACCTACATCACAGCAGTAGTCGTACCCGATGCCTGT
GCGTCATGCCTGCGTACAACACGACAGCATTGCTCGAAGCACTACATCAC
AATCCACAGAGCAGCAGCAGTGTTGTGAACGTACACTGCTGTCACCTTTC
TAGCCTTCTCCTTTGCCTTTTCCTCTTCGAGGCCAAGCGCTGCTGCTGCC
TCTTCCCCTTTAGAGGCGTCTTCCTTCTTGGCCGGTGGCATTGCAGATTC
GGCATCGGATCGGGTGGGGTACGGTACTTGCACCACCGTGCCGACCACGC
CGCCATCTTTCGTCGCCACCTGCACTTAACATACGAGTGACGATAGATGT
TATCGAAATACCTCGGAAAACCCATCCTTCATTGACAGCCTTTTCCCATC
TTCGCCTCAACAGGTCCCCCTTGGGCATTGGCGCGTTTTAGGTGAGATAC
CCCGGCGGCTTTCCGTGATAGACATAGACATAAGACATAGATATAGACAC
TTCGTATGTCGCGTTCGAGGTTCGCAGGATCCTCA
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Coding sequence (CDS) from alignment at C-linearis_contig89:314784..319268-

>mRNA_C-linearis_contig89.16407.1 ID=mRNA_C-linearis_contig89.16407.1|Name=mRNA_C-linearis_contig89.16407.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at C-linearis_contig89:314784..319268- (Chordaria linearis ClinC8C monoicous)
ATGTGCGCTAGCGCATTTATCGCCCCCTCAGCCGATGTGCGCTAGCGCAT
TTATCGCCCCCTCAGCCGTCAAGTCCGGGTCCTTCGCTACCCCCGCCATG
CGCGCGACCTCGACGGTCGCACCCAAGACGACCATGAACATGGGGCTCGA
GCAGATCGTCGACGTCCTCCCCGTCGTGCCGGCGGAGGCACACAACGCCG
TGCTCGAGATGGCAGACAACCCGCTGCTGCTCTCGCTCAGGGCGGATTCT
TTCGGAGGATTGATCGGACCCATCGGCGGCTGCCTCGCCGTCGCCATCTT
CATCGTCGTCATGGCGCCCCCGCGGGTGGACTAATCAAGTCCGGGTCCTT
CGCTACCCCCGCCATGCGCGCGACCTCGACGGTCGCACCCAAGACGACCA
TGAACATGGGGCTCGAGCAGATCGTCGACGTCCTCCCCGTCGTGCCGGCG
GAGGCACACAACGCCGTGCTCGAGATGGCAGACAACCCGCTGCTGCTCTC
GCTCAGGGCGGATTCTTTCGGAGGATTGATCGGACCCATCGGCGGCTGCC
TCGCCGTCGCCATCTTCATCGTCGTCATGGCGCCCCCGCGGGTGGACTAA
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