prot_C-linearis_contig88.16333.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig88.16333.1
Unique Nameprot_C-linearis_contig88.16333.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length156
Homology
BLAST of mRNA_C-linearis_contig88.16333.1 vs. uniprot
Match: D7FM72_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM72_ECTSI)

HSP 1 Score: 203 bits (517), Expect = 3.810e-64
Identity = 103/155 (66.45%), Postives = 117/155 (75.48%), Query Frame = 0
Query:    1 MPHRHSDDSFFLFFRTAEIRNEIVGKEPFEVELQAGSFYWGDHLANPIVHKICVGKRSLDCMDVELKADRPKPTSLGPALPNDGPKRDLCFENDVLRAYRVKLTPGQNIDGALTAAVEGGEGVGSKGWGVGFACLAVAINSARLSRGEVKAVGNW 155
            M HRHS DSFFLFFRTA+IRNE+VGKEPFEVEL+AGSFYWGDHLANPI+HK+CVG R LDCMD+E+KADRP+P SL PALP+   +RDLCFEN VLRAYRVKL PG+ I     A   GG+G       V F  LAVA+  A+LS G V    NW
Sbjct:    6 MYHRHSQDSFFLFFRTAQIRNEVVGKEPFEVELEAGSFYWGDHLANPIIHKVCVGNRKLDCMDIEIKADRPRPASLSPALPSTL-QRDLCFENGVLRAYRVKLAPGECIGSVFDAG--GGDGSMVP---VPFGYLAVAMTIAKLSSGGVMPGDNW 154          
BLAST of mRNA_C-linearis_contig88.16333.1 vs. uniprot
Match: A0A6H5KK12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK12_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 1.790e-20
Identity = 52/94 (55.32%), Postives = 61/94 (64.89%), Query Frame = 0
Query:   62 MDVELKADRPKPTSLGPALPNDGPKRDLCFENDVLRAYRVKLTPGQNIDGALTAAVEGGEGVGSKGWGVGFACLAVAINSARLSRGEVKAVGNW 155
            MD+E+K DRP+P S+ PALP+   +RDLCFEN VLRAYRVKL PG+ I     A    G G GS    V F  LAVA+  A+LS GEVK   NW
Sbjct:    1 MDIEIKVDRPRPASVSPALPSTS-QRDLCFENGVLRAYRVKLAPGEFIGSVFDA----GGGKGSM-VPVPFGYLAVAMTIAQLSSGEVKPGDNW 88          
BLAST of mRNA_C-linearis_contig88.16333.1 vs. uniprot
Match: UPI00067D068C (hypothetical protein n=1 Tax=Bradyrhizobium tropiciagri TaxID=312253 RepID=UPI00067D068C)

HSP 1 Score: 57.4 bits (137), Expect = 5.350e-7
Identity = 32/110 (29.09%), Postives = 57/110 (51.82%), Query Frame = 0
Query:    3 HRHSDDSFFLFFRTAEIRNEIVGKEPFEVELQAGSFYWGDHLANPIVHKICVGKRSLDCMDVELKADRPKP----TSLGPALPNDGPKRDLCFENDVLRAYRVKLTPGQN 108
            H H  D  F+    A+I+N+++GKEP E+E + G   +  +   P VH++   ++      +      P+P     S  PA      K ++  +ND +RA+R+KL+PG++
Sbjct:   62 HSHDQDLVFVITAGAKIKNQVLGKEPVELEFKTGEVRFASYTKTPGVHQVINIEKDHAMRLLAFAIVYPEPGRYSVSTRPA------KYEVALDNDRVRAWRLKLSPGES 165          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig88.16333.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FM72_ECTSI3.810e-6466.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KK12_9PHAE1.790e-2055.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI00067D068C5.350e-729.09hypothetical protein n=1 Tax=Bradyrhizobium tropic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig88contigC-linearis_contig88:115562..116751 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig88.16333.1mRNA_C-linearis_contig88.16333.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig88 114600..116869 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig88.16333.1 ID=prot_C-linearis_contig88.16333.1|Name=mRNA_C-linearis_contig88.16333.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=156bp
MPHRHSDDSFFLFFRTAEIRNEIVGKEPFEVELQAGSFYWGDHLANPIVH
KICVGKRSLDCMDVELKADRPKPTSLGPALPNDGPKRDLCFENDVLRAYR
VKLTPGQNIDGALTAAVEGGEGVGSKGWGVGFACLAVAINSARLSRGEVK
AVGNW*
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