mRNA_C-linearis_contig88.16333.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig88.16333.1
Unique NamemRNA_C-linearis_contig88.16333.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig88.16333.1 vs. uniprot
Match: D7FM72_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM72_ECTSI)

HSP 1 Score: 229 bits (583), Expect = 8.820e-72
Identity = 123/196 (62.76%), Postives = 141/196 (71.94%), Query Frame = 1 
Query:  325 NQDTMPHRHSDDSFFLFFRTAEIRNEIVGKEPFEVELQAGSFYWGDHLANPIVHKICVGKRSLDCMDVELKADRPKPTSLGPALPNDGPKRDLCFENDVLRAYRVKLTPGQNIDGALTAAVEGGEGVGSKGWGVGFACLAVAINSARLSRGEVKAVGNW*C---TGGVE--DTG-------SNVGEEEAELMIMQP 876
            NQDTM HRHS DSFFLFFRTA+IRNE+VGKEPFEVEL+AGSFYWGDHLANPI+HK+CVG R LDCMD+E+KADRP+P SL PALP+   +RDLCFEN VLRAYRVKL PG+ I     A   GG+G       V F  LAVA+  A+LS G V    NW C   +G +   D G       SNVGEEE E+MI+QP
Sbjct:    2 NQDTMYHRHSQDSFFLFFRTAQIRNEVVGKEPFEVELEAGSFYWGDHLANPIIHKVCVGNRKLDCMDIEIKADRPRPASLSPALPSTL-QRDLCFENGVLRAYRVKLAPGECIGSVFDAG--GGDGSMVP---VPFGYLAVAMTIAKLSSGGVMPGDNWWCGKSSGDISAGDAGTTTDGAWSNVGEEEVEVMILQP 191
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BLAST of mRNA_C-linearis_contig88.16333.1 vs. uniprot
Match: A0A6H5KK12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK12_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 7.050e-25
Identity = 66/131 (50.38%), Postives = 77/131 (58.78%), Query Frame = 1 
Query:  520 MDVELKADRPKPTSLGPALPNDGPKRDLCFENDVLRAYRVKLTPGQNIDGALTAAVEGGEGVGSKGWGVGFACLAVAINSARLSRGEVKAVGNW*CTGGVEDTG------------SNVGEEEAELMIMQP 876
            MD+E+K DRP+P S+ PALP+   +RDLCFEN VLRAYRVKL PG+ I     A    G G GS    V F  LAVA+  A+LS GEVK   NW C     D              SNVGEEE E+MI+QP
Sbjct:    1 MDIEIKVDRPRPASVSPALPSTS-QRDLCFENGVLRAYRVKLAPGEFIGSVFDA----GGGKGSM-VPVPFGYLAVAMTIAQLSSGEVKPGDNWWCGKSSGDISAGEAGTTADGAWSNVGEEEVEVMILQP 125
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BLAST of mRNA_C-linearis_contig88.16333.1 vs. uniprot
Match: A0A7S1GI49_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GI49_CYCTE)

HSP 1 Score: 85.5 bits (210), Expect = 2.580e-15
Identity = 57/175 (32.57%), Postives = 90/175 (51.43%), Query Frame = 1 
Query:  238 EYVEVYDEPLRPTVFENDYIRALKVDCPSNQDTMPHRHSDDS--FFLFFRTAEIRNEIVGKEPFEVELQAGSFYWGDHLAN-PIVHKIC-VGKRSLDCMDVELKADRPKPTSLGPALPNDGPKRDLCFENDVLRAYRVKLTPGQNID--------------GALTAAVEGGEGVG 708
            E +EV  EP    V  N+Y+RAL+V+ PS   T+ HRH++DS  FFL     E+ N + G +P    ++ G   +G H  + P+VHKI  +  +S+ C+D E+   RP  T+   A+P    K +L    D  R Y++ L PG+++               G +   ++GG+G G
Sbjct:  129 EIMEVGAEPRHKVVINNEYVRALRVEFPSKDTTLAHRHAEDSIYFFLVEGGLEVVNHVKGFDPQCDCMEYGEVRYGTHKTDKPLVHKITNMTDKSMLCIDAEV-LKRPPVTA---AIPLVAKKHELFKTRDKCRVYKLTLAPGESVTVTYPFFSLTVVIKPGVIKKELKGGQGTG 299
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BLAST of mRNA_C-linearis_contig88.16333.1 vs. uniprot
Match: A0A1Q7YI25_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium 13_1_20CM_3_53_8 TaxID=1803431 RepID=A0A1Q7YI25_9BACT)

HSP 1 Score: 67.0 bits (162), Expect = 2.010e-9
Identity = 60/216 (27.78%), Postives = 94/216 (43.52%), Query Frame = 1 
Query:  244 VEVYDEPLRPTVFENDYIRALKVDCPSNQDTMPHRHSDDSFFLFFRTAEIRNEIVGKEPFEVELQAGSFYWGDHLANPIVHKIC-VGKRSLDCMDVELKADRPKPTSLGPALPNDGPKRDLCFENDVLRAYRVKLTPGQNIDGALTAAVEGGEGVGSKGWGVGFACLAVAINSARLSRGEVKAVGN---W*CTGGVEDTGSNVGEEEAELMIMQPK 879
            V V  EP     FEN Y+R   V  P    T+ H HS+D  F+    A ++ +++G +P ++ L +G   +      P+ H++  VG      + VE+ +  P  TS   +L N  P   L  +N+ +R +R+ L PGQ+  G  T  + G         GV  +   + I S    R  VK       W  TG    +  NVG    E + ++ K
Sbjct:   21 VPVASEPRHHLKFENQYVRVFDVLVPPGDATLFHTHSNDYVFVTISGANLKAQVMGAQPVDLNLTSGEVRF---TKAPLTHRVTNVGSTPFRNITVEILSS-PSSTSSAASLENV-PGHTLVLDNERVRVHRLVLEPGQST-GVHTHELSG--------LGVAVSTGEIEIESPGQQRQTVKLQPGDFRW-HTGATTHSIKNVGSTRFEAVNIEWK 221
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BLAST of mRNA_C-linearis_contig88.16333.1 vs. uniprot
Match: UPI00067D068C (hypothetical protein n=1 Tax=Bradyrhizobium tropiciagri TaxID=312253 RepID=UPI00067D068C)

HSP 1 Score: 67.0 bits (162), Expect = 2.280e-9
Identity = 40/143 (27.97%), Postives = 69/143 (48.25%), Query Frame = 1 
Query:  244 VEVYDEPLRPTVFENDYIRALKVDCPSNQDTMPHRHSDDSFFLFFRTAEIRNEIVGKEPFEVELQAGSFYWGDHLANPIVHKICVGKRSLDCMDVELKADRPKP----TSLGPALPNDGPKRDLCFENDVLRAYRVKLTPGQN 660
            V V   P     F++D +  + V  P    T  H H  D  F+    A+I+N+++GKEP E+E + G   +  +   P VH++   ++      +      P+P     S  PA      K ++  +ND +RA+R+KL+PG++
Sbjct:   29 VPVTKAPFHLFTFQDDNMSLVSVTLPPGFSTGYHSHDQDLVFVITAGAKIKNQVLGKEPVELEFKTGEVRFASYTKTPGVHQVINIEKDHAMRLLAFAIVYPEPGRYSVSTRPA------KYEVALDNDRVRAWRLKLSPGES 165
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig88.16333.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FM72_ECTSI8.820e-7262.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KK12_9PHAE7.050e-2550.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1GI49_CYCTE2.580e-1532.57Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A1Q7YI25_9BACT2.010e-927.78Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]
UPI00067D068C2.280e-927.97hypothetical protein n=1 Tax=Bradyrhizobium tropic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig88contigC-linearis_contig88:114600..116869 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-16_004830.1
Exons4
Model size922
Cds size468
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig88.16333.1prot_C-linearis_contig88.16333.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig88 115562..116751 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930677.1749756-UTR-C-linearis_contig88:114599..1147381622930677.1749756-UTR-C-linearis_contig88:114599..114738Chordaria linearis ClinC8C monoicousUTRC-linearis_contig88 114600..114738 +
1690881191.404202-UTR-C-linearis_contig88:114599..1147381690881191.404202-UTR-C-linearis_contig88:114599..114738Chordaria linearis ClinC8C monoicousUTRC-linearis_contig88 114600..114738 +
1622930677.1908402-UTR-C-linearis_contig88:115364..1155611622930677.1908402-UTR-C-linearis_contig88:115364..115561Chordaria linearis ClinC8C monoicousUTRC-linearis_contig88 115365..115561 +
1690881191.415452-UTR-C-linearis_contig88:115364..1155611690881191.415452-UTR-C-linearis_contig88:115364..115561Chordaria linearis ClinC8C monoicousUTRC-linearis_contig88 115365..115561 +
1622930677.2459722-UTR-C-linearis_contig88:116751..1168691622930677.2459722-UTR-C-linearis_contig88:116751..116869Chordaria linearis ClinC8C monoicousUTRC-linearis_contig88 116752..116869 +
1690881191.4545612-UTR-C-linearis_contig88:116751..1168691690881191.4545612-UTR-C-linearis_contig88:116751..116869Chordaria linearis ClinC8C monoicousUTRC-linearis_contig88 116752..116869 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930677.2046773-CDS-C-linearis_contig88:115561..1156151622930677.2046773-CDS-C-linearis_contig88:115561..115615Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 115562..115615 +
1690881191.4251761-CDS-C-linearis_contig88:115561..1156151690881191.4251761-CDS-C-linearis_contig88:115561..115615Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 115562..115615 +
1622930677.2211323-CDS-C-linearis_contig88:115892..1159911622930677.2211323-CDS-C-linearis_contig88:115892..115991Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 115893..115991 +
1690881191.434961-CDS-C-linearis_contig88:115892..1159911690881191.434961-CDS-C-linearis_contig88:115892..115991Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 115893..115991 +
1622930677.2327929-CDS-C-linearis_contig88:116436..1167511622930677.2327929-CDS-C-linearis_contig88:116436..116751Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 116437..116751 +
1690881191.4447474-CDS-C-linearis_contig88:116436..1167511690881191.4447474-CDS-C-linearis_contig88:116436..116751Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 116437..116751 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig88.16333.1

>prot_C-linearis_contig88.16333.1 ID=prot_C-linearis_contig88.16333.1|Name=mRNA_C-linearis_contig88.16333.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=156bp
MPHRHSDDSFFLFFRTAEIRNEIVGKEPFEVELQAGSFYWGDHLANPIVH
KICVGKRSLDCMDVELKADRPKPTSLGPALPNDGPKRDLCFENDVLRAYR
VKLTPGQNIDGALTAAVEGGEGVGSKGWGVGFACLAVAINSARLSRGEVK
AVGNW*
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mRNA from alignment at C-linearis_contig88:114600..116869+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig88.16333.1 ID=mRNA_C-linearis_contig88.16333.1|Name=mRNA_C-linearis_contig88.16333.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2270bp|location=Sequence derived from alignment at C-linearis_contig88:114600..116869+ (Chordaria linearis ClinC8C monoicous)
AGCGACTGGGGAGCGGTCAGCCCGGGTACCTGTTTGTCTGGTCGACTAGT
GGAGGCGTTCACTGGCGTTCGTAGCGAGGGAGAGGGGCGAAGGGGCATAG
TCTAGGTGTGGTGTACAGCGTGAAAGTGTGTACAACAAGGTACATACCAG
TACAATAACCTGCTTCTCACGATGTGACCGAGCACATGAACAATCGAGAT
GGTGCAGGGTGTTTTCAAAACACACCGATCGGTACAGTAGTGTTATTATT
ATTATGATTTAACGCAGCAGCAGGCTCATCGTGCCACGGCGGTGAAAAAT
GTCATTCGCACCTACTATCTTTGGATTTTGATCAAGACGACCAATGTCTA
CTGAGTGCCGCGAAGCTTTTTGCTTGTGTCTGTACTACACGTGGGGTCCG
TTTTATTTTTCAGTATACCTTTTTAGGTAAGTTAGCTTGTGACCGCGGAA
AATGGCCGCGTCAAGTGATGGATTAGTACGGAGAGGTTGAGACAGAAGGA
GGAACTGGATAGCGACGAGACCGGGATGGTTTTTAATGTGAAGACAACAA
CAACAACAACAACAACAACAACAACAACAACACGGCACAACCAGGCACAA
CAGCAGTTGTGTGGTAAATATGGCGCAACATCCTTCGACGGTAGAGTGCA
CCGCGGTTTATAGAGAAGAATATCGGTCCTGGAAGCGTACCGAGAGCTTA
TTCCGCTACTTCCCCCTCGACAAAAGCCTGCTCGCTTGTGTGTAAATGCT
GCCGATTCATGCCAGCTGCGCAACGGAGATCTACGGAGATCGCAACACCC
GGGGGCGCCGGCATAGCCACCGCCGAAGCTCCGGCGCGTGCCGTGGATGC
ACCGGCGACAGTGGAGTACGTGGAGGTCTACGATGAGCCGCTCCGCCCCA
CGGTGTTCGAGAACGACTATATCAGAGCTCTCAAGGTGGACTGCCCCAGC
AACCAAGACACGATGCCCCATCGGCATAGCGACGACAGCTTCTTTCTCTT
CTTTCGAACGGCCGAGGTATTTGTAAACAGCAAACAGCAGTGTTGTGCAG
CGAAACGCATCCATCTGCCAGCAAGATGCAAGATGCTTCTGTTTCTTTCG
TTGCAGCCGCAGGGGCAAGAGGTATTGTTTTGCCTGGACACAGCAGCAGC
AGCAGCAGCAGCAGAAAACGGAAACGCTGGGTATGAACATCCCGCAGACC
AACCACAATTGCCCTTCGTCTACCATGCCTGGTTGTTTTCCCTTTCCAAC
GTTTGGTGTTGTGTTTTGTGTTGTGGTGCATCTATCAAGTCAGATTCGCA
ACGAGATTGTGGGCAAGGAGCCGTTTGAGGTTGAGCTGCAGGCGGGATCA
TTTTACTGGGGAGACCACCTGGCGAACCCGATCGTACACAAGGTGACACG
ACACGACACGTGAAAGACCAAGAGGGTTTCGTATTGAGTTCCTCGATGTT
GTTGGTGTTGGCTGTCGGCACTGCTTTGTACACAAGGTGGAAGGATTTTC
GTGTCGATCTCTTCCTGTTGTTGGATGTAGCTCCACACCGACTTGGCGCC
GATTCGTGGCCGTGTCTCATTTCCCTGTGCGGAGGCCCTGTTTTTTTACT
CTCCCTTGACACTAGATCGGCATAGAACACAAAGTAGTACGTACTGGTAC
TGCTGCTCTCCTGTTCCCGGCGGTGGACGACCCATCTGCTAACATTTTTC
GTTAGTTCTTTCGTCGCCCAACTTTCCATCTGCATGGTACAGCAGTGTAA
TACCCTGCTTTTCTCAGCGGGCTGACCAGAAGTTTGCGTATATTTTCCTC
TTCCGTCGCCCAACTATGCATCCCATCTACCCCTCAGATATGCGTAGGCA
AGCGCAGCTTGGACTGCATGGACGTGGAGCTTAAGGCGGATCGCCCCAAG
CCGACAAGCCTCGGCCCCGCTCTGCCCAACGATGGCCCAAAGCGCGACCT
GTGCTTCGAGAACGACGTGCTCAGAGCGTACCGTGTAAAGCTTACCCCAG
GACAGAACATCGACGGCGCTCTGACTGCTGCTGTTGAGGGTGGGGAGGGT
GTTGGGTCGAAGGGGTGGGGGGTAGGATTTGCGTGCCTAGCGGTTGCTAT
CAATAGCGCAAGGCTGTCGAGGGGGGAAGTGAAGGCTGTCGGTAACTGGT
AGTGTACGGGTGGGGTTGAGGACACGGGGAGCAATGTTGGCGAGGAGGAG
GCGGAGTTGATGATCATGCAGCCAAAGTAGATGGGGGGTTACACGTGTGA
AAATTGGTAGAGTAGGGGGG
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Coding sequence (CDS) from alignment at C-linearis_contig88:114600..116869+

>mRNA_C-linearis_contig88.16333.1 ID=mRNA_C-linearis_contig88.16333.1|Name=mRNA_C-linearis_contig88.16333.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=936bp|location=Sequence derived from alignment at C-linearis_contig88:114600..116869+ (Chordaria linearis ClinC8C monoicous)
ATGCCCCATCGGCATAGCGACGACAGCTTCTTTCTCTTCTTTCGAACGGC
CGAGATGCCCCATCGGCATAGCGACGACAGCTTCTTTCTCTTCTTTCGAA
CGGCCGAGATTCGCAACGAGATTGTGGGCAAGGAGCCGTTTGAGGTTGAG
CTGCAGGCGGGATCATTTTACTGGGGAGACCACCTGGCGAACCCGATCGT
ACACAAGATTCGCAACGAGATTGTGGGCAAGGAGCCGTTTGAGGTTGAGC
TGCAGGCGGGATCATTTTACTGGGGAGACCACCTGGCGAACCCGATCGTA
CACAAGATATGCGTAGGCAAGCGCAGCTTGGACTGCATGGACGTGGAGCT
TAAGGCGGATCGCCCCAAGCCGACAAGCCTCGGCCCCGCTCTGCCCAACG
ATGGCCCAAAGCGCGACCTGTGCTTCGAGAACGACGTGCTCAGAGCGTAC
CGTGTAAAGCTTACCCCAGGACAGAACATCGACGGCGCTCTGACTGCTGC
TGTTGAGGGTGGGGAGGGTGTTGGGTCGAAGGGGTGGGGGGTAGGATTTG
CGTGCCTAGCGGTTGCTATCAATAGCGCAAGGCTGTCGAGGGGGGAAGTG
AAGGCTGTCGGTAACTGGTAGATATGCGTAGGCAAGCGCAGCTTGGACTG
CATGGACGTGGAGCTTAAGGCGGATCGCCCCAAGCCGACAAGCCTCGGCC
CCGCTCTGCCCAACGATGGCCCAAAGCGCGACCTGTGCTTCGAGAACGAC
GTGCTCAGAGCGTACCGTGTAAAGCTTACCCCAGGACAGAACATCGACGG
CGCTCTGACTGCTGCTGTTGAGGGTGGGGAGGGTGTTGGGTCGAAGGGGT
GGGGGGTAGGATTTGCGTGCCTAGCGGTTGCTATCAATAGCGCAAGGCTG
TCGAGGGGGGAAGTGAAGGCTGTCGGTAACTGGTAG
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