prot_C-linearis_contig85.16178.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig85.16178.1
Unique Nameprot_C-linearis_contig85.16178.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length335
Homology
BLAST of mRNA_C-linearis_contig85.16178.1 vs. uniprot
Match: D7FUC6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC6_ECTSI)

HSP 1 Score: 265 bits (676), Expect = 8.860e-81
Identity = 140/295 (47.46%), Postives = 193/295 (65.42%), Query Frame = 0
Query:    1 MRMTGDPRWPGQVRFTKALVKHNAIDPIMSLIRDQEVELCLKVLRDVDGRAVVDGML--GDMYHKREIKMDEFHLMPDMYEKEIRAIVKRLKPYVTREMVALFSQGMSIVDALVNACLRCQDLLGQLAFAVYMMCVTSPLGVKTEVMEAIIPLVAKTTGSTDSTGKGTAGVHLKNPQMHPCVAVMVVLLRPLMREHLRELDPGLRLCSNPAMFDDRGKCFTTDKLKRLFQYVGKHTIGIPKWGYMVCRSIFASSVAIVAIGRGDGMGAGYVKRVIGQCRMSQEQFGGTYSTVEAR 293
            M++ G P +  +      +V+HNA++P+  LI + EV++CL V R  D   +VD +L   D+ +   ++++E  LMP  Y   I  IV+RLKP VT EMVALFSQG+++VDA++NACLRCQDLLG  AFA YMM   SP    TEVME ++PL AK T ++D + +GTA VHLK P MH  +AV++VLLRPLMREHL+    G +LC     FD  GK FT  KL  LFQY GKH +G+P+WGY + R++  S+   +A+ +G+G  A +V++V GQ R S  +  GT S+ E R
Sbjct:  257 MKIPGCPIFRKRTNHMVDVVQHNALEPVTDLISEDEVKMCLDVRRSTDRNTMVDDVLRVNDLDYNAILEIEESRLMPQKYAVAIGEIVRRLKPDVTAEMVALFSQGLTLVDAVLNACLRCQDLLGMFAFASYMMTFVSPKKAPTEVMEVVLPLTAKDTRASDGSIQGTACVHLKRPDMHRWLAVLLVLLRPLMREHLQ--GSGKQLCLEVGPFDANGKLFTNSKLLDLFQYAGKHFLGLPRWGYNINRTVHTSNATFLALAQGEGSNAPWVEKVFGQARQSNNRTQGTCSSTERR 549          
BLAST of mRNA_C-linearis_contig85.16178.1 vs. uniprot
Match: D8LH64_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH64_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 4.380e-9
Identity = 58/182 (31.87%), Postives = 92/182 (50.55%), Query Frame = 0
Query:   19 LVKHNAIDPIMSLIRDQE--VELCLKVLRDVDGRAVVDGMLGDMYHKREIKMDEFHLMPDMYEKEIRAIVKRLKP--YVTREMVALFSQGMSIVDALVNACLRCQDLLGQLAFAVYMMCVTSPLGVKTEVMEAIIPLVAKTTGSTDSTGKGTAGVHLKNPQMHPCVAVMVVLLRPLMREHLR 196
            LV  N ID  M  + D++  V++C +VL +++ R            KRE   +E HL P  +++ I AIV  L     VTR  ++L S  ++++D+L+ A LR QD+LGQLA  +Y M      G    +   ++P   K   + +++  G    H K+ +     AVM V+ R +MR  LR
Sbjct: 1039 LVSRNGIDSFMEKLPDKDDIVKMCNEVL-EMNPR------------KRE---NEDHLCPPEFKQRIEAIVDELVEGNKVTRSDISLLSCSLTVLDSLLTAALRKQDILGQLAKDLYRMKCKDVYGNDVAITRCLLPRYFKNKKALENSTCGVVVNHTKHEKCEGAYAVMAVIGRKVMRSFLR 1204          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig85.16178.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FUC6_ECTSI8.860e-8147.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LH64_ECTSI4.380e-931.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig85contigC-linearis_contig85:686786..687790 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig85.16178.1mRNA_C-linearis_contig85.16178.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig85 685397..687790 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig85.16178.1 ID=prot_C-linearis_contig85.16178.1|Name=mRNA_C-linearis_contig85.16178.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=335bp
MRMTGDPRWPGQVRFTKALVKHNAIDPIMSLIRDQEVELCLKVLRDVDGR
AVVDGMLGDMYHKREIKMDEFHLMPDMYEKEIRAIVKRLKPYVTREMVAL
FSQGMSIVDALVNACLRCQDLLGQLAFAVYMMCVTSPLGVKTEVMEAIIP
LVAKTTGSTDSTGKGTAGVHLKNPQMHPCVAVMVVLLRPLMREHLRELDP
GLRLCSNPAMFDDRGKCFTTDKLKRLFQYVGKHTIGIPKWGYMVCRSIFA
SSVAIVAIGRGDGMGAGYVKRVIGQCRMSQEQFGGTYSTVEARHCSQQGM
DAKTGGIESCNNAIDDEIAAAAAAAPVVAPAPAAP
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