mRNA_C-linearis_contig85.16178.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_C-linearis_contig85.16178.1
Unique Name	mRNA_C-linearis_contig85.16178.1
Type	mRNA
Organism	Chordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)

Homology

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BLAST of mRNA_C-linearis_contig85.16178.1 vs. uniprot
Match: D7FUC6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC6_ECTSI)

HSP 1 Score: 299 bits (766), Expect = 1.280e-90
Identity = 194/463 (41.90%), Postives = 266/463 (57.45%), Query Frame = 3

Query:  327 GQERFCRPG--QKTDGTCRGGSDVCLGPDAKIDGRHDCQPGKPGALGRGRPYPRRSPEENQTEVDGEDASQSRGQDLDRTDPGRPGDTRPGHQGCCGDCAS---GRNRVLYVEPLTNDKDVHA---RVHADYC----LQFADVKKQESDRRANADKKVYVPRKVGTGRMRMTGDPRWPGQVRFTKALVKHNAIDPIMSLIRDQEVELCLKVLRDVDGRAVVDGML--GDMYHKREIKMDEFHLMPDMYEKEIRAIVKRLKPYVTREMVALFSQGMSIVDALVNACLRCQDLLGQLAFAVYMMCVTSPLGVKTEVMEAIIPLVAKTTGSTDSTGKGTAGVHLKNPQMHPCVAVMVVLLRPLMREHLRELDPGLRLCSNPAMFDDRGKCFTTDKLKRLFQYVGKHTIGIPKWGYMVCRSIFASSVAIVAIGRGDGMGAGYVKRVIGQCRMSQEQFGGTYSTVEAR 1673
            G+ +  R G  ++  G CRGGS V LGP   ++   D QP +P  LG GR +PR  P +N  +       + RG D    D    G     H G     A+   GR R ++   L+  +  HA   RVH D         AD KK        A+K++   RKV  GRM++ G P +  +      +V+HNA++P+  LI + EV++CL V R  D   +VD +L   D+ +   ++++E  LMP  Y   I  IV+RLKP VT EMVALFSQG+++VDA++NACLRCQDLLG  AFA YMM   SP    TEVME ++PL AK T ++D + +GTA VHLK P MH  +AV++VLLRPLMREHL+    G +LC     FD  GK FT  KL  LFQY GKH +G+P+WGY + R++  S+   +A+ +G+G  A +V++V GQ R S  +  GT S+ E R
Sbjct:  103 GKRKLKRDGAYREAFGPCRGGSTVRLGPYEGLESGQDTQPREPRPLG-GRCHPRGGPYDN-ADPRTTGLYRRRGGDERWQDLAHEGS----HAGLLSSAAARFRGRRRQVFASGLSPRQVAHAGVDRVHDDTLGAGWYGVADDKK--------AEKRIADNRKVRGGRMKIPGCPIFRKRTNHMVDVVQHNALEPVTDLISEDEVKMCLDVRRSTDRNTMVDDVLRVNDLDYNAILEIEESRLMPQKYAVAIGEIVRRLKPDVTAEMVALFSQGLTLVDAVLNACLRCQDLLGMFAFASYMMTFVSPKKAPTEVMEVVLPLTAKDTRASDGSIQGTACVHLKRPDMHRWLAVLLVLLRPLMREHLQ--GSGKQLCLEVGPFDANGKLFTNSKLLDLFQYAGKHFLGLPRWGYNINRTVHTSNATFLALAQGEGSNAPWVEKVFGQARQSNNRTQGTCSSTERR 549

[Close]

BLAST of mRNA_C-linearis_contig85.16178.1 vs. uniprot
Match: D8LH64_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH64_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 1.540e-10
Identity = 70/267 (26.22%), Postives = 120/267 (44.94%), Query Frame = 3

Query:  642 YVEPLTNDKDVHARVHADYCLQFADV----------------KKQESDRRANADKKVYVPRKVGTGRMRMTGDPRWPGQVRFTKALVKHNAIDPIMSLIRDQE--VELCLKVLRDVDGRAVVDGMLGDMYHKREIKMDEFHLMPDMYEKEIRAIVKRLKP--YVTREMVALFSQGMSIVDALVNACLRCQDLLGQLAFAVYMMCVTSPLGVKTEVMEAIIPLVAKTTGSTDSTGKGTAGVHLKNPQMHPCVAVMVVLLRPLMREHLR 1382
            +V P    +D +++  + +  + AD+                K+ E     N ++++    K   GR  + G           + LV  N ID  M  + D++  V++C +VL +++ R            KRE   +E HL P  +++ I AIV  L     VTR  ++L S  ++++D+L+ A LR QD+LGQLA  +Y M      G    +   ++P   K   + +++  G    H K+ +     AVM V+ R +MR  LR
Sbjct:  954 HVSPTLRHRDAYSQAFSSHSKRKADLDVFDIIKGGYHSVSQEKRSEKGVIENENERIAFGAKFNKGRTHLVGSDECLQGFLLLEELVSRNGIDSFMEKLPDKDDIVKMCNEVL-EMNPR------------KRE---NEDHLCPPEFKQRIEAIVDELVEGNKVTRSDISLLSCSLTVLDSLLTAALRKQDILGQLAKDLYRMKCKDVYGNDVAITRCLLPRYFKNKKALENSTCGVVVNHTKHEKCEGAYAVMAVIGRKVMRSFLR 1204

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig85.16178.1 vs. uniprot

BLAST of mRNA_C-linearis_contig85.16178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D7FUC6_ECTSI	1.280e-90	41.90	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D8LH64_ECTSI	1.540e-10	26.22	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-linearis_contig85	contig	C-linearis_contig85:685397..687790 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	5
Model size	1799
Cds size	1005
Stop	0
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig85.16178.1	prot_C-linearis_contig85.16178.1	Chordaria linearis ClinC8C monoicous	polypeptide	C-linearis_contig85 686786..687790 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930648.481668-UTR-C-linearis_contig85:685396..685486	1622930648.481668-UTR-C-linearis_contig85:685396..685486	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig85 685397..685486 +
1690881177.7980404-UTR-C-linearis_contig85:685396..685486	1690881177.7980404-UTR-C-linearis_contig85:685396..685486	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig85 685397..685486 +
1622930648.5005062-UTR-C-linearis_contig85:685537..685590	1622930648.5005062-UTR-C-linearis_contig85:685537..685590	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig85 685538..685590 +
1690881177.8105178-UTR-C-linearis_contig85:685537..685590	1690881177.8105178-UTR-C-linearis_contig85:685537..685590	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig85 685538..685590 +
1622930648.5180526-UTR-C-linearis_contig85:685782..686143	1622930648.5180526-UTR-C-linearis_contig85:685782..686143	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig85 685783..686143 +
1690881177.81915-UTR-C-linearis_contig85:685782..686143	1690881177.81915-UTR-C-linearis_contig85:685782..686143	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig85 685783..686143 +
1622930648.5343106-UTR-C-linearis_contig85:686347..686494	1622930648.5343106-UTR-C-linearis_contig85:686347..686494	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig85 686348..686494 +
1690881177.8302734-UTR-C-linearis_contig85:686347..686494	1690881177.8302734-UTR-C-linearis_contig85:686347..686494	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig85 686348..686494 +
1622930648.5531504-UTR-C-linearis_contig85:686642..686785	1622930648.5531504-UTR-C-linearis_contig85:686642..686785	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig85 686643..686785 +
1690881177.8387856-UTR-C-linearis_contig85:686642..686785	1690881177.8387856-UTR-C-linearis_contig85:686642..686785	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig85 686643..686785 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930648.5697575-CDS-C-linearis_contig85:686785..687790	1622930648.5697575-CDS-C-linearis_contig85:686785..687790	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig85 686786..687790 +
1690881177.8473797-CDS-C-linearis_contig85:686785..687790	1690881177.8473797-CDS-C-linearis_contig85:686785..687790	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig85 686786..687790 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-linearis_contig85:685397..687790+
coding sequence from alignment at C-linearis_contig85:685397..687790+

protein sequence of mRNA_C-linearis_contig85.16178.1

>prot_C-linearis_contig85.16178.1 ID=prot_C-linearis_contig85.16178.1|Name=mRNA_C-linearis_contig85.16178.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=335bp
MRMTGDPRWPGQVRFTKALVKHNAIDPIMSLIRDQEVELCLKVLRDVDGR
AVVDGMLGDMYHKREIKMDEFHLMPDMYEKEIRAIVKRLKPYVTREMVAL
FSQGMSIVDALVNACLRCQDLLGQLAFAVYMMCVTSPLGVKTEVMEAIIP
LVAKTTGSTDSTGKGTAGVHLKNPQMHPCVAVMVVLLRPLMREHLRELDP
GLRLCSNPAMFDDRGKCFTTDKLKRLFQYVGKHTIGIPKWGYMVCRSIFA
SSVAIVAIGRGDGMGAGYVKRVIGQCRMSQEQFGGTYSTVEARHCSQQGM
DAKTGGIESCNNAIDDEIAAAAAAAPVVAPAPAAP

mRNA from alignment at C-linearis_contig85:685397..687790+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-linearis_contig85.16178.1 ID=mRNA_C-linearis_contig85.16178.1|Name=mRNA_C-linearis_contig85.16178.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2394bp|location=Sequence derived from alignment at C-linearis_contig85:685397..687790+ (Chordaria linearis ClinC8C monoicous)
CTGGTGACGGAAGTCCCCGGGCTGAATGGCATCCAGGAGGGGGCGGAAGG
AACCACGCTGACTTCGTTAAAGTTTGGGAGGGGGAGGGTGGTTTCGTCCA
GGCGACAGTTGCCACAAAAGGGCAAGAAGAAGAAGAAAGAGGTTGCATCC
AACACACACCTGGTGGCGAAGGGGAACAGGGTGTTCACAATCAGGTACGG
ATCTTCGTCTCTTTCTGATAAAAAGCGACGTCGTACCTATTTTTGAACTA
GCCTTGCCCTTTTTATCGCGTCCCTGATGACCCTTTTTCTCTTGGTCGTA
AAATTTTGTGCCCCAAACCATTCCGCAGTTTCCAAAATTTCCAAACCATG
CTGACTTAGAAAATTTGGTTGACTGTGGTGTACCAGGTGGGGACACAAGG
GTTACTCCGACGGCAATTACTCCACCTACGACGTGCTTCGCGAGGCAGAC
AAGGGACAGGTTGCCTCCTTCAAGAAAACCGTCACCTGTATGGTCAACTA
TCTGTGCGTCGTCCTCTCCTACGTGAACACCTTTGGCGCCGACTTCACCG
CCAACGACCAGAAGCATAAGGTCAGGAGAGATTTTGTAGACCTGGACAAA
AAACAGACGGCACGTGCAGAGGAGGTTCGGACGTTTGCCTGGGACCAGAT
GCTAAAATTGACGGTCGACATGACTGTCAGCCCGGCAAGCCTGGAGCTCT
TGGACGGGGGAGACCCTACCCTCGGCGCAGCCCTGAAGAAAACCAAAGTC
TTCGACCTATTGTGCTTTGAAGACGCCGCGTCGGGTCGAGATGGTGGCAA
GATGCAAATCGCAAATAATTACGGCAAAGGTTTTTGCAAGGAATGGTTGC
GCGGAAGCGTCGATGACATCGTGAAGAACGCGCAGGCGGCGTGTCGCCTG
GGCAGGATTCCCACGACGGAGTTATTCACGTATGTAATGACTCTCGCCGA
GCTGAAGTCGATGGGGAAGACGCCTCACAGTCTCGAGGCCAAGATCTGGA
CCGAACGGATCCCGGACGCCCCGGGGACACACGGCCTGGCCACCAGGGCT
GCTGTGGCGATTGCGCGAGTGGAAGAAACAGAGTTCTGTACGTGGAGCGT
GCACTTCCCCCTCTACCGGCTGTTGCTGCTCCCGCGGCCGGAGGGGAGGC
TCATGGAGCCATCGGAGAGCAGTGGAAAGTCGGCAAAGGCCCGGAAGAAT
GGTGCCCTTTATGAGAAAGCGAAGCTACTTTGCGAACCGAGTAAAGCTCT
CACCAACGACAAAGATGTCCACGCCCGCGTCCACGCCGATTACTGTCTTC
AGTTCGCGGATGTCAAGAAGCAGGAGTCGGACAGGCGAGCCAACGCGGAC
AAGAAGGTCTACGTACCTCGCAAAGTAGGTACAGGCCGAATGAGAATGAC
GGGAGACCCACGGTGGCCAGGACAAGTGCGCTTTACCAAGGCCCTGGTGA
AGCACAACGCGATAGACCCTATCATGTCGCTTATCCGTGACCAGGAGGTG
GAGTTGTGCTTGAAGGTGCTGCGGGATGTGGACGGAAGGGCCGTCGTAGA
TGGGATGCTCGGCGATATGTACCACAAGAGGGAGATCAAAATGGACGAGT
TTCACCTGATGCCGGACATGTACGAGAAGGAAATCCGGGCTATCGTCAAG
CGCTTGAAGCCCTACGTCACGAGGGAGATGGTGGCGCTTTTTAGCCAGGG
CATGTCTATCGTGGACGCCCTTGTGAACGCGTGCCTTCGGTGCCAGGACC
TTCTGGGGCAGCTCGCATTCGCTGTTTACATGATGTGTGTTACGTCTCCT
CTGGGGGTGAAGACCGAGGTGATGGAAGCGATCATACCTCTCGTGGCGAA
AACTACTGGTAGCACCGACAGCACGGGCAAAGGCACGGCAGGTGTGCATC
TGAAGAACCCGCAGATGCACCCCTGTGTGGCCGTGATGGTTGTTCTGCTT
CGCCCCTTGATGAGAGAGCACCTCCGAGAATTGGACCCCGGGCTACGGCT
ATGTTCGAACCCGGCTATGTTTGACGATCGTGGGAAATGCTTCACTACGG
ACAAGCTGAAGAGGTTGTTCCAATACGTCGGGAAACACACCATCGGCATC
CCGAAGTGGGGGTACATGGTTTGTCGCAGCATCTTTGCTTCGAGTGTGGC
AATTGTGGCGATTGGTCGAGGCGATGGTATGGGTGCCGGCTACGTGAAAA
GGGTCATTGGCCAATGCCGCATGAGCCAGGAACAATTCGGCGGGACCTAC
AGTACGGTTGAGGCGCGACACTGCTCCCAACAGGGCATGGACGCCAAGAC
GGGGGGAATCGAGTCGTGTAATAACGCCATAGACGATGAGATTGCAGCCG
CTGCTGCCGCTGCTCCTGTGGTCGCCCCTGCCCCGGCTGCTCCT

Coding sequence (CDS) from alignment at C-linearis_contig85:685397..687790+

>mRNA_C-linearis_contig85.16178.1 ID=mRNA_C-linearis_contig85.16178.1|Name=mRNA_C-linearis_contig85.16178.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2010bp|location=Sequence derived from alignment at C-linearis_contig85:685397..687790+ (Chordaria linearis ClinC8C monoicous)
ATGAGAATGACGGGAGACCCACGGTGGCCAGGACAAGTGCGCTTTACCAA
GGCCCTGGTGAAGCACAACGCGATAGACCCTATCATGTCGCTTATCCGTG
ACCAGGAGGTGGAGTTGTGCTTGAAGGTGCTGCGGGATGTGGACGGAAGG
GCCGTCGTAGATGGGATGCTCGGCGATATGTACCACAAGAGGGAGATCAA
AATGGACGAGTTTCACCTGATGCCGGACATGTACGAGAAGGAAATCCGGG
CTATCGTCAAGCGCTTGAAGCCCTACGTCACGAGGGAGATGGTGGCGCTT
TTTAGCCAGGGCATGTCTATCGTGGACGCCCTTGTGAACGCGTGCCTTCG
GTGCCAGGACCTTCTGGGGCAGCTCGCATTCGCTGTTTACATGATGTGTG
TTACGTCTCCTCTGGGGGTGAAGACCGAGGTGATGGAAGCGATCATACCT
CTCGTGGCGAAAACTACTGGTAGCACCGACAGCACGGGCAAAGGCACGGC
AGGTGTGCATCTGAAGAACCCGCAGATGCACCCCTGTGTGGCCGTGATGG
TTGTTCTGCTTCGCCCCTTGATGAGAGAGCACCTCCGAGAATTGGACCCC
GGGCTACGGCTATGTTCGAACCCGGCTATGTTTGACGATCGTGGGAAATG
CTTCACTACGGACAAGCTGAAGAGGTTGTTCCAATACGTCGGGAAACACA
CCATCGGCATCCCGAAGTGGGGGTACATGGTTTGTCGCAGCATCTTTGCT
TCGAGTGTGGCAATTGTGGCGATTGGTCGAGGCGATGGTATGGGTGCCGG
CTACGTGAAAAGGGTCATTGGCCAATGCCGCATGAGCCAGGAACAATTCG
GCGGGACCTACAGTACGGTTGAGGCGCGACACTGCTCCCAACAGGGCATG
GACGCCAAGACGGGGGGAATCGAGTCGTGTAATAACGCCATAGACGATGA
GATTGCAGCCGCTGCTGCCGCTGCTCCTGTGGTCGCCCCTGCCCCGGCTG
CTCCTATGAGAATGACGGGAGACCCACGGTGGCCAGGACAAGTGCGCTTT
ACCAAGGCCCTGGTGAAGCACAACGCGATAGACCCTATCATGTCGCTTAT
CCGTGACCAGGAGGTGGAGTTGTGCTTGAAGGTGCTGCGGGATGTGGACG
GAAGGGCCGTCGTAGATGGGATGCTCGGCGATATGTACCACAAGAGGGAG
ATCAAAATGGACGAGTTTCACCTGATGCCGGACATGTACGAGAAGGAAAT
CCGGGCTATCGTCAAGCGCTTGAAGCCCTACGTCACGAGGGAGATGGTGG
CGCTTTTTAGCCAGGGCATGTCTATCGTGGACGCCCTTGTGAACGCGTGC
CTTCGGTGCCAGGACCTTCTGGGGCAGCTCGCATTCGCTGTTTACATGAT
GTGTGTTACGTCTCCTCTGGGGGTGAAGACCGAGGTGATGGAAGCGATCA
TACCTCTCGTGGCGAAAACTACTGGTAGCACCGACAGCACGGGCAAAGGC
ACGGCAGGTGTGCATCTGAAGAACCCGCAGATGCACCCCTGTGTGGCCGT
GATGGTTGTTCTGCTTCGCCCCTTGATGAGAGAGCACCTCCGAGAATTGG
ACCCCGGGCTACGGCTATGTTCGAACCCGGCTATGTTTGACGATCGTGGG
AAATGCTTCACTACGGACAAGCTGAAGAGGTTGTTCCAATACGTCGGGAA
ACACACCATCGGCATCCCGAAGTGGGGGTACATGGTTTGTCGCAGCATCT
TTGCTTCGAGTGTGGCAATTGTGGCGATTGGTCGAGGCGATGGTATGGGT
GCCGGCTACGTGAAAAGGGTCATTGGCCAATGCCGCATGAGCCAGGAACA
ATTCGGCGGGACCTACAGTACGGTTGAGGCGCGACACTGCTCCCAACAGG
GCATGGACGCCAAGACGGGGGGAATCGAGTCGTGTAATAACGCCATAGAC
GATGAGATTGCAGCCGCTGCTGCCGCTGCTCCTGTGGTCGCCCCTGCCCC
GGCTGCTCCT