prot_C-linearis_contig84.16114.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig84.16114.1
Unique Nameprot_C-linearis_contig84.16114.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length261
Homology
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BLAST of mRNA_C-linearis_contig84.16114.1 vs. uniprot
Match: A0A6H5L8Z2_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8Z2_9PHAE)

HSP 1 Score: 208 bits (529), Expect = 6.990e-60
Identity = 113/189 (59.79%), Postives = 130/189 (68.78%), Query Frame = 0 
Query:   34 REVDAVCPICLDKFERPVTLTSCLHSFCHTCILGWYEHTVAVALSQGNLSAFQSERG-------APTNSTGNSXXXXXXXXXXXGKRPAP--YRCPLCQVPGPFFLSGGPAKPNXXXXXXXVGGDGKNN-PSKLKFRLLGARTVFGGGGPTTGGLTVDEHAGDGGEKAEDGGGSGYPSPTMSELRAAVR 212
            REV +VCPICL +FE PVTLTSCLH+FCHTCILGWYEHTVAVALS+GNLSAF  ERG         +N    S            KRPAP  YRCPLCQVPGPFFL+    +P           + K++ PSKLKFRLLGA TVFGGGGP + G+ VDEHAG G  K  DGG +GYPSP+M++LRAAV+
Sbjct:  101 REVHSVCPICLGRFEEPVTLTSCLHTFCHTCILGWYEHTVAVALSRGNLSAFHPERGNSNTWRGGSSNDISGSSGTSTGNRDGGRKRPAPVPYRCPLCQVPGPFFLA--VERPRSSSFKGKREANPKSSKPSKLKFRLLGAPTVFGGGGPVSRGVAVDEHAGGGRGKGGDGGTAGYPSPSMADLRAAVQ 287
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BLAST of mRNA_C-linearis_contig84.16114.1 vs. uniprot
Match: D8LPV3_ECTSI (zf-RING_UBOX domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPV3_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 3.550e-8
Identity = 25/30 (83.33%), Postives = 27/30 (90.00%), Query Frame = 0 
Query:   34 REVDAVCPICLDKFERPVTLTSCLHSFCHT 63
            REV +VCPICL KFE PVTLTSCLH+FCHT
Sbjct:   45 REVHSVCPICLGKFEEPVTLTSCLHTFCHT 74
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig84.16114.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L8Z2_9PHAE6.990e-6059.79RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LPV3_ECTSI3.550e-883.33zf-RING_UBOX domain-containing protein n=1 Tax=Ect... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 40..122
e-value: 3.1E-10
score: 50.0
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 40..123
score: 10.055
IPR027370RING-type zinc-finger, LisH dimerisation motifPFAMPF13445zf-RING_UBOXcoord: 40..68
e-value: 4.5E-10
score: 39.4
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 56..65
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 35..72

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig84contigC-linearis_contig84:550230..551634 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig84.16114.1mRNA_C-linearis_contig84.16114.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig84 550228..551634 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig84.16114.1 ID=prot_C-linearis_contig84.16114.1|Name=mRNA_C-linearis_contig84.16114.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=261bp
DVEALGKGGKFGAGDLRGAAAGKGDGGIERGEEREVDAVCPICLDKFERP
VTLTSCLHSFCHTCILGWYEHTVAVALSQGNLSAFQSERGAPTNSTGNSS
SSSGSNSSSGGKRPAPYRCPLCQVPGPFFLSGGPAKPNNNNKNNNVGGDG
KNNPSKLKFRLLGARTVFGGGGPTTGGLTVDEHAGDGGEKAEDGGGSGYP
SPTMSELRAAVRIQLALAAAAQGSGAGEGPPAKKKSRPPCSAAGKKREGT
ASVEGGGRGDS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR027370Znf-RING_LisH
IPR017907Znf_RING_CS