mRNA_C-linearis_contig84.16114.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig84.16114.1
Unique NamemRNA_C-linearis_contig84.16114.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig84.16114.1 vs. uniprot
Match: A0A6H5L8Z2_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8Z2_9PHAE)

HSP 1 Score: 208 bits (529), Expect = 6.990e-60
Identity = 113/189 (59.79%), Postives = 130/189 (68.78%), Query Frame = 1 
Query:  100 REVDAVCPICLDKFERPVTLTSCLHSFCHTCILGWYEHTVAVALSQGNLSAFQSERG-------APTNSTGNSXXXXXXXXXXXGKRPAP--YRCPLCQVPGPFFLSGGPAKPNXXXXXXXVGGDGKNN-PSKLKFRLLGARTVFGGGGPTTGGLTVDEHAGDGGEKAEDGGGSGYPSPTMSELRAAVR 636
            REV +VCPICL +FE PVTLTSCLH+FCHTCILGWYEHTVAVALS+GNLSAF  ERG         +N    S            KRPAP  YRCPLCQVPGPFFL+    +P           + K++ PSKLKFRLLGA TVFGGGGP + G+ VDEHAG G  K  DGG +GYPSP+M++LRAAV+
Sbjct:  101 REVHSVCPICLGRFEEPVTLTSCLHTFCHTCILGWYEHTVAVALSRGNLSAFHPERGNSNTWRGGSSNDISGSSGTSTGNRDGGRKRPAPVPYRCPLCQVPGPFFLA--VERPRSSSFKGKREANPKSSKPSKLKFRLLGAPTVFGGGGPVSRGVAVDEHAGGGRGKGGDGGTAGYPSPSMADLRAAVQ 287
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BLAST of mRNA_C-linearis_contig84.16114.1 vs. uniprot
Match: D8LPV3_ECTSI (zf-RING_UBOX domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPV3_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 3.550e-8
Identity = 25/30 (83.33%), Postives = 27/30 (90.00%), Query Frame = 1 
Query:  100 REVDAVCPICLDKFERPVTLTSCLHSFCHT 189
            REV +VCPICL KFE PVTLTSCLH+FCHT
Sbjct:   45 REVHSVCPICLGKFEEPVTLTSCLHTFCHT 74
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig84.16114.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L8Z2_9PHAE6.990e-6059.79RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LPV3_ECTSI3.550e-883.33zf-RING_UBOX domain-containing protein n=1 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig84contigC-linearis_contig84:550228..551634 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size786
Cds size783
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930637.8801386-CDS-C-linearis_contig84:550229..5508211622930637.8801386-CDS-C-linearis_contig84:550229..550821Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 550230..550821 -
1690881172.5205162-CDS-C-linearis_contig84:550229..5508211690881172.5205162-CDS-C-linearis_contig84:550229..550821Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 550230..550821 -
1622930637.8971403-CDS-C-linearis_contig84:551443..5516341622930637.8971403-CDS-C-linearis_contig84:551443..551634Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 551444..551634 -
1690881172.5296059-CDS-C-linearis_contig84:551443..5516341690881172.5296059-CDS-C-linearis_contig84:551443..551634Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 551444..551634 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig84.16114.1prot_C-linearis_contig84.16114.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig84 550230..551634 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig84.16114.1

>prot_C-linearis_contig84.16114.1 ID=prot_C-linearis_contig84.16114.1|Name=mRNA_C-linearis_contig84.16114.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=261bp
DVEALGKGGKFGAGDLRGAAAGKGDGGIERGEEREVDAVCPICLDKFERP
VTLTSCLHSFCHTCILGWYEHTVAVALSQGNLSAFQSERGAPTNSTGNSS
SSSGSNSSSGGKRPAPYRCPLCQVPGPFFLSGGPAKPNNNNKNNNVGGDG
KNNPSKLKFRLLGARTVFGGGGPTTGGLTVDEHAGDGGEKAEDGGGSGYP
SPTMSELRAAVRIQLALAAAAQGSGAGEGPPAKKKSRPPCSAAGKKREGT
ASVEGGGRGDS
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mRNA from alignment at C-linearis_contig84:550228..551634-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig84.16114.1 ID=mRNA_C-linearis_contig84.16114.1|Name=mRNA_C-linearis_contig84.16114.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1407bp|location=Sequence derived from alignment at C-linearis_contig84:550228..551634- (Chordaria linearis ClinC8C monoicous)
GACGTAGAGGCTCTCGGGAAGGGTGGGAAGTTCGGGGCGGGTGATCTCCG
CGGGGCGGCCGCGGGTAAGGGCGATGGAGGGATCGAGCGGGGGGAGGAGA
GGGAGGTCGACGCGGTGTGCCCGATTTGCCTAGACAAGTTCGAACGGCCG
GTGACTCTTACGTCCTGCCTCCATAGCTTCTGTCATACCTGGTGAGAAGG
CACCAACGGGATGATCACGTTGTGCCACAGTAGTGGCTCGAAGTTGTGGA
AATGCATCAACTCCCGATACGGTACTACGACTGCCCTACACTTAATCCCG
CACGTTATTATCAGCAGCAGTCGGGTGCGGTGTACATACAACACTCACAT
AAGCGCTCCGTGACTCACCGAGCAGCTTCAGTGAAGCCGTACCATGAGTT
TGGCATTTTTGAAACCTATAATAGTCTTAACCTTTGCAAGGGTCTCGCTA
CTGCGAGCGCCTATTAGACTATGTAGGATGGAATGGACTCACGATGTTTT
CAATTTTTTGTTCTTGGGACGACCAAGCAAAGTCGGGAGCATTTTGATGA
TGCGTGCAACCACCAGAATCTGGTGATCTGGTGTGGCCAAGTCATGGTGA
ACATTGTGCGCATCTTTTTTGTACGGGCGACATTTCACCTGGCGGTTACT
TATTTCGTTTAGATTGGTTGTGTTGTACCAGCCATGCCTCCATGGCCCGT
GTGTAAATGTAAACTCATGCCCCCTCCCTTCTCTCGCTTGTCCTGTTCCC
CCGTATTCGCGGCTCTTGAACTTTCACTGCCACCGGCCGATGCCTCCGCC
TTGCTTCCTGAAGCATTCTCGGCTGGTACGAGCACACTGTGGCAGTGGCA
CTATCCCAGGGAAACTTGTCCGCCTTTCAATCAGAACGAGGAGCCCCGAC
AAACAGCACCGGAAACAGCAGCAGCAGCAGCGGCAGCAACAGCAGTAGCG
GCGGCAAGAGGCCGGCACCGTACAGATGCCCGCTCTGTCAGGTTCCGGGG
CCTTTCTTTCTGTCAGGGGGACCCGCCAAGCCCAACAACAACAACAAAAA
CAATAACGTCGGCGGCGACGGCAAGAATAACCCCTCAAAGCTCAAGTTCA
GGCTCCTGGGAGCGCGGACGGTTTTCGGGGGCGGCGGGCCAACGACCGGA
GGATTGACGGTGGACGAGCACGCCGGCGATGGTGGAGAGAAGGCAGAGGA
CGGGGGCGGGTCTGGGTACCCCAGCCCCACCATGAGCGAGCTCCGCGCTG
CGGTACGGATACAGCTTGCGCTCGCTGCTGCGGCCCAGGGATCGGGGGCG
GGGGAAGGGCCACCAGCCAAGAAAAAATCGCGACCACCCTGTTCAGCCGC
AGGGAAAAAGCGGGAGGGAACAGCCAGCGTGGAGGGCGGGGGGAGGGGCG
ATTCGTC
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Coding sequence (CDS) from alignment at C-linearis_contig84:550228..551634-

>mRNA_C-linearis_contig84.16114.1 ID=mRNA_C-linearis_contig84.16114.1|Name=mRNA_C-linearis_contig84.16114.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1566bp|location=Sequence derived from alignment at C-linearis_contig84:550228..551634- (Chordaria linearis ClinC8C monoicous)
GACGTAGAGGCTCTCGGGAAGGGTGGGAAGTTCGGGGCGGGTGATCTCCG
CGGGGCGGCCGCGGGTAAGGGCGATGGAGGGATCGAGCGGGGGGAGGAGA
GGGAGGTCGACGCGGTGTGCCCGATTTGCCTAGACAAGTTCGAACGGCCG
GTGACTCTTACGTCCTGCCTCCATAGCTTCTGTCATACCTGGACGTAGAG
GCTCTCGGGAAGGGTGGGAAGTTCGGGGCGGGTGATCTCCGCGGGGCGGC
CGCGGGTAAGGGCGATGGAGGGATCGAGCGGGGGGAGGAGAGGGAGGTCG
ACGCGGTGTGCCCGATTTGCCTAGACAAGTTCGAACGGCCGGTGACTCTT
ACGTCCTGCCTCCATAGCTTCTGTCATACCTGCATTCTCGGCTGGTACGA
GCACACTGTGGCAGTGGCACTATCCCAGGGAAACTTGTCCGCCTTTCAAT
CAGAACGAGGAGCCCCGACAAACAGCACCGGAAACAGCAGCAGCAGCAGC
GGCAGCAACAGCAGTAGCGGCGGCAAGAGGCCGGCACCGTACAGATGCCC
GCTCTGTCAGGTTCCGGGGCCTTTCTTTCTGTCAGGGGGACCCGCCAAGC
CCAACAACAACAACAAAAACAATAACGTCGGCGGCGACGGCAAGAATAAC
CCCTCAAAGCTCAAGTTCAGGCTCCTGGGAGCGCGGACGGTTTTCGGGGG
CGGCGGGCCAACGACCGGAGGATTGACGGTGGACGAGCACGCCGGCGATG
GTGGAGAGAAGGCAGAGGACGGGGGCGGGTCTGGGTACCCCAGCCCCACC
ATGAGCGAGCTCCGCGCTGCGGTACGGATACAGCTTGCGCTCGCTGCTGC
GGCCCAGGGATCGGGGGCGGGGGAAGGGCCACCAGCCAAGAAAAAATCGC
GACCACCCTGTTCAGCCGCAGGGAAAAAGCGGGAGGGAACAGCCAGCGTG
GAGGGCGGGGGGAGGGGCGATTCGCATTCTCGGCTGGTACGAGCACACTG
TGGCAGTGGCACTATCCCAGGGAAACTTGTCCGCCTTTCAATCAGAACGA
GGAGCCCCGACAAACAGCACCGGAAACAGCAGCAGCAGCAGCGGCAGCAA
CAGCAGTAGCGGCGGCAAGAGGCCGGCACCGTACAGATGCCCGCTCTGTC
AGGTTCCGGGGCCTTTCTTTCTGTCAGGGGGACCCGCCAAGCCCAACAAC
AACAACAAAAACAATAACGTCGGCGGCGACGGCAAGAATAACCCCTCAAA
GCTCAAGTTCAGGCTCCTGGGAGCGCGGACGGTTTTCGGGGGCGGCGGGC
CAACGACCGGAGGATTGACGGTGGACGAGCACGCCGGCGATGGTGGAGAG
AAGGCAGAGGACGGGGGCGGGTCTGGGTACCCCAGCCCCACCATGAGCGA
GCTCCGCGCTGCGGTACGGATACAGCTTGCGCTCGCTGCTGCGGCCCAGG
GATCGGGGGCGGGGGAAGGGCCACCAGCCAAGAAAAAATCGCGACCACCC
TGTTCAGCCGCAGGGAAAAAGCGGGAGGGAACAGCCAGCGTGGAGGGCGG
GGGGAGGGGCGATTCG
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