prot_C-linearis_contig84.16089.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig84.16089.1
Unique Nameprot_C-linearis_contig84.16089.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length157
Homology
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BLAST of mRNA_C-linearis_contig84.16089.1 vs. uniprot
Match: D8LMW5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMW5_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 2.980e-22
Identity = 62/100 (62.00%), Postives = 70/100 (70.00%), Query Frame = 0 
Query:   22 RPLLVLAFLSSALLPMISYITXXXXXXXXXXXXLSSSLRTNKHADRVSSLFGIKRKVKAEMESNFSGKVVEPATAETSMFGSDANALFDVIEKNKKKAAE 121
            RPLL L FL++ L+ +             XXXX     R+ K A+R++ L GIKRKVK EME NFSGKVVEPA A TSMFGSDANALFDVIEKNKKKAAE
Sbjct:   19 RPLLAL-FLAALLVVLSPASAFLSSSPPRXXXXXXXXXRSAKRAERLAPLHGIKRKVKVEMEENFSGKVVEPAGAATSMFGSDANALFDVIEKNKKKAAE 117
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig84.16089.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LMW5_ECTSI2.980e-2262.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..46
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 36..46
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 47..156
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 24..35
NoneNo IPR availableTMHMMTMhelixcoord: 24..46

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig84contigC-linearis_contig84:86932..87773 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig84.16089.1mRNA_C-linearis_contig84.16089.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig84 86892..88203 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig84.16089.1 ID=prot_C-linearis_contig84.16089.1|Name=mRNA_C-linearis_contig84.16089.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=157bp
MSSPRTFGRRRSSNGGGSSLNRPLLVLAFLSSALLPMISYITPVSAFLSP
ASSLLSSSLRTNKHADRVSSLFGIKRKVKAEMESNFSGKVVEPATAETSM
FGSDANALFDVIEKNKKKAAEAAAAAGALVDGDGDEEGEGAEGGDASDAE
TSREAA*
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