mRNA_C-linearis_contig84.16089.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig84.16089.1
Unique NamemRNA_C-linearis_contig84.16089.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig84.16089.1 vs. uniprot
Match: D8LMW5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMW5_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 1.440e-20
Identity = 62/100 (62.00%), Postives = 70/100 (70.00%), Query Frame = 2 
Query:  104 RPLLVLAFLSSALLPMISYITXXXXXXXXXXXXLSSSLRTNKHADRVSSLFGIKRKVKAEMESNFSGKVVEPATAETSMFGSDANALFDVIEKNKKKAAE 403
            RPLL L FL++ L+ +             XXXX     R+ K A+R++ L GIKRKVK EME NFSGKVVEPA A TSMFGSDANALFDVIEKNKKKAAE
Sbjct:   19 RPLLAL-FLAALLVVLSPASAFLSSSPPRXXXXXXXXXRSAKRAERLAPLHGIKRKVKVEMEENFSGKVVEPAGAATSMFGSDANALFDVIEKNKKKAAE 117
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig84.16089.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LMW5_ECTSI1.440e-2062.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig84contigC-linearis_contig84:86892..88203 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-02_003890.1
Exons2
Model size941
Cds size471
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig84.16089.1prot_C-linearis_contig84.16089.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig84 86932..87773 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930630.0734246-UTR-C-linearis_contig84:86891..869311622930630.0734246-UTR-C-linearis_contig84:86891..86931Chordaria linearis ClinC8C monoicousUTRC-linearis_contig84 86892..86931 +
1690881168.1868858-UTR-C-linearis_contig84:86891..869311690881168.1868858-UTR-C-linearis_contig84:86891..86931Chordaria linearis ClinC8C monoicousUTRC-linearis_contig84 86892..86931 +
1622930630.1344297-UTR-C-linearis_contig84:87773..882031622930630.1344297-UTR-C-linearis_contig84:87773..88203Chordaria linearis ClinC8C monoicousUTRC-linearis_contig84 87774..88203 +
1690881168.2161698-UTR-C-linearis_contig84:87773..882031690881168.2161698-UTR-C-linearis_contig84:87773..88203Chordaria linearis ClinC8C monoicousUTRC-linearis_contig84 87774..88203 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930630.0978603-CDS-C-linearis_contig84:86931..871861622930630.0978603-CDS-C-linearis_contig84:86931..87186Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 86932..87186 +
1690881168.1968393-CDS-C-linearis_contig84:86931..871861690881168.1968393-CDS-C-linearis_contig84:86931..87186Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 86932..87186 +
1622930630.1175826-CDS-C-linearis_contig84:87557..877731622930630.1175826-CDS-C-linearis_contig84:87557..87773Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 87558..87773 +
1690881168.206175-CDS-C-linearis_contig84:87557..877731690881168.206175-CDS-C-linearis_contig84:87557..87773Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 87558..87773 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig84.16089.1

>prot_C-linearis_contig84.16089.1 ID=prot_C-linearis_contig84.16089.1|Name=mRNA_C-linearis_contig84.16089.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=157bp
MSSPRTFGRRRSSNGGGSSLNRPLLVLAFLSSALLPMISYITPVSAFLSP
ASSLLSSSLRTNKHADRVSSLFGIKRKVKAEMESNFSGKVVEPATAETSM
FGSDANALFDVIEKNKKKAAEAAAAAGALVDGDGDEEGEGAEGGDASDAE
TSREAA*
back to top

mRNA from alignment at C-linearis_contig84:86892..88203+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig84.16089.1 ID=mRNA_C-linearis_contig84.16089.1|Name=mRNA_C-linearis_contig84.16089.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1312bp|location=Sequence derived from alignment at C-linearis_contig84:86892..88203+ (Chordaria linearis ClinC8C monoicous)
GGGGGCACAAATCGACCGAGAGGTTACAGCATCTGCATACATGTCGTCAC
CACGGACCTTCGGCAGGAGACGCAGCAGCAACGGCGGTGGTAGCAGTCTG
AACCGGCCACTACTTGTCCTGGCATTCTTGAGCAGTGCCCTCCTCCCAAT
GATATCGTACATAACGCCGGTGTCTGCCTTCCTGTCACCAGCGTCGTCTT
TGTTATCGTCGTCTTTACGAACGAACAAGCACGCAGACAGAGTTTCGTCG
CTGTTCGGCATCAAGAGGAAGGTCAAGGCCGAGATGGAGTCGAACGTGAG
TACAAATCATCAACGACATTGACGCTTCGCTTGTGCTTGTGTGGCGAGTT
CATCGTGCTGCAGCTCGCGTACTTTTGAGTGAGAACTGTCCTGAATGTGT
GCCTGCCTGCCTTTTCGTTGCTCAAAATCTCCCAGTTTTTCCGGGTATGC
GGCCGCGGTTCTCACCACAACGATAGCTTTGATCAGGTGCAGCCCGAACC
GGCACTGCTGCGTCCTCAGTGGCGTTGTATGCTGTCGCCGTCAGAAGAGA
ACCTACTGGTGGGCGGATCGAGGACTTGCAGGATGTTGATCACTGCTTTG
ACCCGACCTTGTCTGTCTCCCATGTCTGTGTTACTTCGTGTTTTCTCATT
CTCTTCCATACCTCAGTTTTCCGGGAAAGTTGTGGAACCTGCTACCGCGG
AGACGAGCATGTTCGGAAGCGACGCGAACGCCCTCTTCGACGTGATTGAG
AAAAATAAGAAGAAAGCCGCAGAAGCCGCCGCCGCCGCCGGTGCGCTAGT
AGATGGTGATGGAGACGAGGAAGGGGAAGGGGCAGAAGGCGGAGACGCAA
GCGATGCCGAGACAAGCAGGGAGGCCGCATGATGGAGCGTAAATAAAGAG
CAGCCTTGCGATATATTGGGCCCGTCTTGCGTTCCTCATTTTTTTTCTTC
TTTTCAGAGATTAAAATAAGGTGTTCAGACATTTAGGCGCGCGGAGCCTA
GAGCGCCCCCCGCGCGATATGTATAAGTGGGCGCCGGTAATGAAGTTCCC
ACTCCAGACTTCAAAAAAATGCTCTGTACGTGGAGTATGGCTGCTTGGAA
GAATGAGTGTTCTAGGCTCTGCTCCAACCCTTGAGGGTAGCTGTGTTTTT
ACGGCGATGAAGGCCACTCTTCACCAGCTCCAGTAGAAAGCGGACTGCTG
ATAATGTATTGAACGGATGGGCAAATTGTGCATTTCGATTTTTTAGCATA
CCACCCCCACCAGTGGATGCAGAGATAAATTGCGAAATTCAAACTCGACA
CAAGACCTGGCT
back to top

Coding sequence (CDS) from alignment at C-linearis_contig84:86892..88203+

>mRNA_C-linearis_contig84.16089.1 ID=mRNA_C-linearis_contig84.16089.1|Name=mRNA_C-linearis_contig84.16089.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=942bp|location=Sequence derived from alignment at C-linearis_contig84:86892..88203+ (Chordaria linearis ClinC8C monoicous)
ATGTCGTCACCACGGACCTTCGGCAGGAGACGCAGCAGCAACGGCGGTGG
TAGCAGTCTGAACCGGCCACTACTTGTCCTGGCATTCTTGAGCAGTGCCC
TCCTCCCAATGATATCGTACATAACGCCGGTGTCTGCCTTCCTGTCACCA
GCGTCGTCTTTGTTATCGTCGTCTTTACGAACGAACAAGCACGCAGACAG
AGTTTCGTCGCTGTTCGGCATCAAGAGGAAGGTCAAGGCCGAGATGGAGT
CGAACATGTCGTCACCACGGACCTTCGGCAGGAGACGCAGCAGCAACGGC
GGTGGTAGCAGTCTGAACCGGCCACTACTTGTCCTGGCATTCTTGAGCAG
TGCCCTCCTCCCAATGATATCGTACATAACGCCGGTGTCTGCCTTCCTGT
CACCAGCGTCGTCTTTGTTATCGTCGTCTTTACGAACGAACAAGCACGCA
GACAGAGTTTCGTCGCTGTTCGGCATCAAGAGGAAGGTCAAGGCCGAGAT
GGAGTCGAACTTTTCCGGGAAAGTTGTGGAACCTGCTACCGCGGAGACGA
GCATGTTCGGAAGCGACGCGAACGCCCTCTTCGACGTGATTGAGAAAAAT
AAGAAGAAAGCCGCAGAAGCCGCCGCCGCCGCCGGTGCGCTAGTAGATGG
TGATGGAGACGAGGAAGGGGAAGGGGCAGAAGGCGGAGACGCAAGCGATG
CCGAGACAAGCAGGGAGGCCGCATGATTTTCCGGGAAAGTTGTGGAACCT
GCTACCGCGGAGACGAGCATGTTCGGAAGCGACGCGAACGCCCTCTTCGA
CGTGATTGAGAAAAATAAGAAGAAAGCCGCAGAAGCCGCCGCCGCCGCCG
GTGCGCTAGTAGATGGTGATGGAGACGAGGAAGGGGAAGGGGCAGAAGGC
GGAGACGCAAGCGATGCCGAGACAAGCAGGGAGGCCGCATGA
back to top