prot_C-linearis_contig8.15661.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig8.15661.1
Unique Nameprot_C-linearis_contig8.15661.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length303
Homology
BLAST of mRNA_C-linearis_contig8.15661.1 vs. uniprot
Match: D8LI95_ECTSI (F-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI95_ECTSI)

HSP 1 Score: 442 bits (1137), Expect = 3.580e-154
Identity = 222/278 (79.86%), Postives = 240/278 (86.33%), Query Frame = 0
Query:   18 LSDLPREVLARSLGWLSMVDLAQVCSVSHDWQKAAEEDSIWRFWWTRRFREDPPAQRGRARRGHLKNLHRYRYKDPLVGDKVEVSWEGRFRLESLDVFVGRSWWEATVVQKVDGYMYRIHYPGWDSNWDEWVVRDRLRWPVDPSYLSTVFKVRDVVEVWCTGTHVKGAWLQARVRQIKQDQVSLKNVLASSPRTIWVPRDNCRLVCAGNSSVPGSSDG----KGGRRGRFSKLDASRQEALARTLRGLSASAR-LPLAGIAGLRAAVRRRASLARMRQ 290
            L+ LPRE+LARS+  L+MVDL QVC V+ DW+ AAEED++WRFWW RRFREDPP QRGRAR GHLK LHRYR +DPLVGDKVEVSWEGRFRLESLDVFVGRSWWEATVVQK+DG+ Y+IHYPGWDSNWDEWVVRDRLRWPVDPSYLST F+VR+VVEVWCTGTHVKGAWLQARVRQIKQDQVSLKNVLASSPRT+WVPR   R VC G S V  SS       GG  GR SKLDASRQEALAR LRGLSA AR LP AG+AGLR AVRRRASL+RMR+
Sbjct:   26 LAGLPRELLARSMELLNMVDLGQVCCVNKDWRNAAEEDAVWRFWWARRFREDPPPQRGRARAGHLKQLHRYRLEDPLVGDKVEVSWEGRFRLESLDVFVGRSWWEATVVQKMDGFKYKIHYPGWDSNWDEWVVRDRLRWPVDPSYLSTTFRVREVVEVWCTGTHVKGAWLQARVRQIKQDQVSLKNVLASSPRTVWVPRSKVRRVCTGASCVNSSSRNGXXXXGG--GRSSKLDASRQEALARALRGLSAGARRLPRAGLAGLRGAVRRRASLSRMRR 301          
BLAST of mRNA_C-linearis_contig8.15661.1 vs. uniprot
Match: W7T606_9STRA (F-box domain-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T606_9STRA)

HSP 1 Score: 170 bits (430), Expect = 4.890e-46
Identity = 87/218 (39.91%), Postives = 128/218 (58.72%), Query Frame = 0
Query:   14 DMAALSDLPREVLARSLGWLSMVDLAQVCSVSHDWQKAAEEDSIWRFWWTRRFR---EDPPAQRGRARRGHLKNLHRYRYKDPLVGDKVEVSWEGRFRLESLDVFVGRSWWEATVVQKVD-GYMYRIHYPGWDSNWDEWVVRDRLRWPVDPSYLSTVFKVRDVVEVWCTGTHVKGAWLQARVRQIKQDQVSLKNVLASSPRTIWVPRDNCRLVCAGNS 227
            D   ++ LP  VL  +  ++S+ +L    SV   W++  +  ++W+  + +RF        A  G       + L R R  DP VGD VEV+W+G+FRLES+D++ G +WW A VV+K + G  Y+IHYPGWDS WDEWV RDRLRW V+   L+      D VE+WC G++V GAWL+A+VR++K     +  VL+S    +WV R+  R+   G +
Sbjct:  190 DKDRVNKLPSAVLIYTASFMSISELGMAASVCQQWKETVQSVAVWKPLYIKRFHFLHSPDDASTGIGLPLSYQALFRARLLDPHVGDLVEVAWKGKFRLESMDIYQGLAWWSAVVVEKGENGARYKIHYPGWDSRWDEWVARDRLRWTVEQD-LNKRIMPNDDVEIWCCGSNVPGAWLEAKVRKVKGQTYCVGRVLSSG--ALWVNRERVRISPKGGA 404          
BLAST of mRNA_C-linearis_contig8.15661.1 vs. uniprot
Match: A0A4D9D060_9STRA (F-box domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D060_9STRA)

HSP 1 Score: 164 bits (414), Expect = 3.940e-45
Identity = 83/204 (40.69%), Postives = 120/204 (58.82%), Query Frame = 0
Query:   14 DMAALSDLPREVLARSLGWLSMVDLAQVCSVSHDWQKAAEEDSIWRFWWTRRFR---EDPPAQRGRARRGHLKNLHRYRYKDPLVGDKVEVSWEGRFRLESLDVFVGRSWWEATVVQKVD-GYMYRIHYPGWDSNWDEWVVRDRLRWPVDPSYLSTVFKVRDVVEVWCTGTHVKGAWLQARVRQIKQDQVSLKNVLASSPRTIW 213
            D   ++ LP  VL  +  ++S+ +L    SV   W++  +  ++W+  + +RF        A  G         L R R  DP VGD VEV+W+G+FRLES+D++ G +WW A VV+K + G  Y+IHYPGWDS WDEWV RDRLRW V+   L+      D VE+WC G++V GAWL+A+VR++K     +  VL+S    +W
Sbjct:   68 DKDRVNKLPSAVLIYTASFMSISELGMAASVCQQWKETVQSGAVWKPLYIKRFHFLHSPDDASTGIGLPVSYHALFRARLLDPYVGDLVEVAWKGKFRLESMDIYQGLAWWSAVVVEKGENGARYKIHYPGWDSRWDEWVPRDRLRWTVEQD-LNKRIMPNDDVEIWCCGSNVPGAWLEAKVRKVKGQTYCVGRVLSSG--ALW 268          
BLAST of mRNA_C-linearis_contig8.15661.1 vs. uniprot
Match: A0A835ZI68_9STRA (Tudor-knot domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI68_9STRA)

HSP 1 Score: 153 bits (387), Expect = 8.630e-42
Identity = 88/226 (38.94%), Postives = 119/226 (52.65%), Query Frame = 0
Query:   32 WLSMVDLAQVCSVSHDWQKAAEEDSIWRFWWTRRFRED-------------PPAQRGRARRGHLKNLHRYRYKDPLVGDKVEVSWEGRFRLESLDVFVGRSWWEATVVQKVDGYM-YRIHYPGWDSNWDEWVVRDRLRWPVDPS---YLSTVFKVRDVVEVWCTGTHVKGAWLQARVRQIKQDQVSLKNVLASSPRTIWVPRDNCRLVCAGNSSVPGSSDGKGGRR 240
            +LS+ +L  +  +S  W++ +E D +WR  +  RF+               PP           K     R   P VGD+VEV+W G+FRLESL+VF G +WW A VV + D    Y++HYPGW+  WDEWV R+RLRW  D      L    +V D VEVWC G HV GAWL+ RV  I+ D+  L ++LA+   T  +P   CRLV        G  +G+  RR
Sbjct:    3 FLSLPELGTLARLSKSWRQLSEHDYLWREPYKARFKISDSLLAAGSDAAVTPPLS--------CKEAFARRLLHPQVGDRVEVAWRGKFRLESLEVFSGLAWWLADVVARSDDCRRYKVHYPGWEPRWDEWVSRERLRWGNDARAARLLGHPVEVGDTVEVWCGGVHVPGAWLEGRVSCIRSDRAYLGDMLAAG--TFSIPLARCRLVRKAELMARGEEEGETVRR 218          
BLAST of mRNA_C-linearis_contig8.15661.1 vs. uniprot
Match: A0A835ZFT0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFT0_9STRA)

HSP 1 Score: 153 bits (387), Expect = 2.780e-41
Identity = 84/209 (40.19%), Postives = 120/209 (57.42%), Query Frame = 0
Query:   41 VCSVSHDWQKAAEEDSIWRFWWTRRFREDPP---------AQRGRARRGHLKNLHRYRYKDPLVGDKVEVSWEGRFRLESLDVFVGRSWWEATVVQ-KVDGYMYRIHYPGWDSNWDEWVVRDRLRWPVD---PSYLSTVFKVRDVVEVWCTGTHVKGAWLQARVRQIKQDQVSLKNVLASSPRTIWVPRDNCRLVCAGNSSVPGSSDGK 236
            VC VS  W++  E + +WR  +  RF+   P         AQ        +K+L   R   P VGD+VEV+W G+FRLESL+++ G +WW A +V+   DG  Y++HYPGW++ WDE+V R+RLRW  D            V D+VE+WC GT+V GAWL+ RV  I+ ++V L +V+A       V  + CRLV  G +S P  S+G+
Sbjct:   53 VCCVSRKWRQLGEHNHLWREPYLTRFKFHSPQEDLATHTEAQELAQPGPKVKDLFARRLVRPQVGDRVEVAWRGKFRLESLEIYNGLAWWLAEIVECDADGQRYKVHYPGWEARWDEFVPRERLRWGNDRRAAQLRDERIAVGDMVEIWCGGTNVPGAWLEGRVSSIRGERVFLGDVVAEG--FFSVTEERCRLVSKG-ASAPPQSEGR 258          
BLAST of mRNA_C-linearis_contig8.15661.1 vs. uniprot
Match: A0A8J2SC81_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SC81_9STRA)

HSP 1 Score: 154 bits (388), Expect = 1.000e-40
Identity = 91/223 (40.81%), Postives = 125/223 (56.05%), Query Frame = 0
Query:   18 LSDLPREVLARS-LGWLSMVDLAQVCSVSHDWQKAAEEDSIWRFWWTRRFREDPPAQRGRARRGHLKNLHRYRYKDPLVGDKVEVSWEGRFRLESLDVFVGRSWWEATVVQKVDGYM-----------------YRIHYPGWDSNWDEWVVRDRLRWPVDPSYLSTVFKVRDVVEVWCTGTHVKGAWLQARVRQIKQDQVSLKNVLASSPRTIWVPRDNCRLV 222
            L+ LPRE+L  + L  L + +LA + +VS   ++AA  D+ WR  + RRF     A         L+   R R  DP  GD+VE++W GRFRLE L+V+ G +WW A VV+K D                    Y++HY  WD+ WDEWV RD+LRWPV P   + V    D VEVWC+G+ V GAWL+A V  ++ +   + +V ASS R +WV RD  RL+
Sbjct:   83 LAGLPRELLEDAVLANLDVKNLAAMAAVSRAARRAASSDAAWRPQYARRFGAADDASEHFDFGASLRESFRQRLGDPAPGDRVEIAWRGRFRLEGLEVYRGLAWWAAEVVEKRDAXXXXXXAPDCPLDDRRARKYKVHYVHWDARWDEWVARDQLRWPV-PEGRTGVVASGDDVEVWCSGSAVPGAWLRAVVTAVEGELYCVGDV-ASSGR-LWVRRDRVRLI 302          
BLAST of mRNA_C-linearis_contig8.15661.1 vs. uniprot
Match: D7FY36_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY36_ECTSI)

HSP 1 Score: 141 bits (355), Expect = 5.920e-36
Identity = 71/151 (47.02%), Postives = 98/151 (64.90%), Query Frame = 0
Query:   82 LKNLHRYRYKDPLVGDKVEVSWEGRFRLESLDVFVGRSWWEATVVQKVD--GYMYRIHYPGWDSNWDEWVVRDRLRWPVDPSYLSTVFK-----VRDVVEVWCTGTHVKGAWLQARVRQIKQDQVSLKNVLASSPRTIWVPRDNCRLVCAG 225
             K  ++ R  DP VGD+V+V+W+G+FRLESL+V+ G +WW A VV K +  GY Y++HYPGW+  WDEWVVRDRLRW  +  +L+   K       D VEVWC G HV GAWL+A V ++++++V L  VL S     W   ++ RL+  G
Sbjct:  146 FKGRYKRRLLDPHVGDEVQVAWKGKFRLESLEVYDGTAWWLARVVDKGEKPGY-YKVHYPGWEPKWDEWVVRDRLRWGNE--HLAAPLKGIPLQAGDAVEVWCKGLHVPGAWLEAVVYEVEKERVYLGEVLTSGH--FWARTEHVRLIQKG 291          
BLAST of mRNA_C-linearis_contig8.15661.1 vs. uniprot
Match: A0A7S2XXB7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXB7_9STRA)

HSP 1 Score: 103 bits (256), Expect = 6.690e-24
Identity = 45/88 (51.14%), Postives = 64/88 (72.73%), Query Frame = 0
Query:  134 YRIHYPGWDSNWDEWVVRDRLRWPVDPSYLSTVFKVRDVVEVWCTGTHVKGAWLQARVRQIKQDQVSLKNVLASSPRTIWVPRDNCRL 221
            Y+IHYPGWD+ WDEWV R+RLRW +  + +   F+V D VEVWCTG++V GAWL+A+V+ IK +Q+ +  +L+S P  +WV +   RL
Sbjct:    1 YKIHYPGWDTRWDEWVPRNRLRWAMHHNPMEN-FQVNDRVEVWCTGSNVPGAWLEAQVKAIKGEQIFVGKMLSSGP--LWVAKTRVRL 85          
BLAST of mRNA_C-linearis_contig8.15661.1 vs. uniprot
Match: A0A7S3K1B0_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K1B0_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 4.250e-12
Identity = 45/119 (37.82%), Postives = 67/119 (56.30%), Query Frame = 0
Query:   18 LSDLPREVLARSL-GWLSMVDLAQVCSVSHDWQKAAEEDSIWRFWWTRRFREDPPAQRGRARRG-------HLKNLHRYRYKDPLVGDKVEVSWEGRFRLESLDVFVGRSWWEATVVQK 128
            LS LPREV+  S+  +     LA + SVS  +++ A+ D+ W+  + R F        G ++ G        LK  +  R +DP  GD+VEV+W+GRFRLE L+V+ G +WW A V +K
Sbjct:  136 LSLLPREVVCGSIFAFFPPKQLAHLASVSRGFKQLADSDASWQATYDRAF--------GNSKAGVTYDYGASLKESYHQRIRDPSTGDRVEVAWQGRFRLEGLEVYRGLAWWAAEVAEK 246          
BLAST of mRNA_C-linearis_contig8.15661.1 vs. uniprot
Match: A0A7R9YCM3_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YCM3_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 2.360e-11
Identity = 40/113 (35.40%), Postives = 61/113 (53.98%), Query Frame = 0
Query:   80 GHLKNLHRYRYKDPLVGDKVEVSWEGRFRLE-SLDVFVGRSWWEATVVQ-KVDGY-----------------------MYRIHYPGWDSNWDEWVVRDRLR--WPVDPSYLST 165
            G +K++ + R+  P +GD++EVSW+G+FRLE +   + GR+WW A VV  ++D +                         ++HY GWD  WDEW+ R+RLR    + PSY  T
Sbjct:  413 GVVKDMLKNRHCVPYIGDQIEVSWKGKFRLEGNAQAYQGRAWWCANVVDVELDPFEEEEEDTEITVATLQMFTSPMASRLKVHYAGWDPRWDEWIERNRLRRAGQIPPSYSRT 525          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15661.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D8LI95_ECTSI3.580e-15479.86F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
W7T606_9STRA4.890e-4639.91F-box domain-containing protein n=1 Tax=Nannochlor... [more]
A0A4D9D060_9STRA3.940e-4540.69F-box domain-containing protein n=1 Tax=Nannochlor... [more]
A0A835ZI68_9STRA8.630e-4238.94Tudor-knot domain-containing protein n=1 Tax=Tribo... [more]
A0A835ZFT0_9STRA2.780e-4140.19Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A8J2SC81_9STRA1.000e-4040.81Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
D7FY36_ECTSI5.920e-3647.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2XXB7_9STRA6.690e-2451.14Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3K1B0_9STRA4.250e-1237.82Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7R9YCM3_9STRA2.360e-1135.40Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001810F-box domainPFAMPF00646F-boxcoord: 18..60
e-value: 1.5E-4
score: 21.6
IPR001810F-box domainPROSITEPS50181FBOXcoord: 15..61
score: 10.822
IPR025995RNA binding activity-knot of a chromodomainPFAMPF11717Tudor-knotcoord: 118..155
e-value: 7.2E-5
score: 22.6
NoneNo IPR availableGENE3D2.30.30.140coord: 90..162
e-value: 1.8E-11
score: 45.6
NoneNo IPR availableGENE3D1.20.1280.50coord: 10..59
e-value: 7.1E-8
score: 34.0
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 8..84
IPR016197Chromo-like domain superfamilySUPERFAMILY54160Chromo domain-likecoord: 96..156

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:2291223..2296001 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15661.1mRNA_C-linearis_contig8.15661.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig8 2289315..2296057 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig8.15661.1 ID=prot_C-linearis_contig8.15661.1|Name=mRNA_C-linearis_contig8.15661.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=303bp
MHRFRQSPGAHSSDMAALSDLPREVLARSLGWLSMVDLAQVCSVSHDWQK
AAEEDSIWRFWWTRRFREDPPAQRGRARRGHLKNLHRYRYKDPLVGDKVE
VSWEGRFRLESLDVFVGRSWWEATVVQKVDGYMYRIHYPGWDSNWDEWVV
RDRLRWPVDPSYLSTVFKVRDVVEVWCTGTHVKGAWLQARVRQIKQDQVS
LKNVLASSPRTIWVPRDNCRLVCAGNSSVPGSSDGKGGRRGRFSKLDASR
QEALARTLRGLSASARLPLAGIAGLRAAVRRRASLARMRQAGAGVGAGMG
AV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001810F-box_dom
IPR025995Tudor-knot
IPR036047F-box-like_dom_sf
IPR016197Chromo-like_dom_sf