mRNA_C-linearis_contig8.15661.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15661.1
Unique NamemRNA_C-linearis_contig8.15661.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig8.15661.1 vs. uniprot
Match: D8LI95_ECTSI (F-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI95_ECTSI)

HSP 1 Score: 442 bits (1137), Expect = 5.320e-145
Identity = 222/278 (79.86%), Postives = 240/278 (86.33%), Query Frame = 3 
Query:  108 LSDLPREVLARSLGWLSMVDLAQVCSVSHDWQKAAEEDSIWRFWWTRRFREDPPAQRGRARRGHLKNLHRYRYKDPLVGDKVEVSWEGRFRLESLDVFVGRSWWEATVVQKVDGYMYRIHYPGWDSNWDEWVVRDRLRWPVDPSYLSTVFKVRDVVEVWCTGTHVKGAWLQARVRQIKQDQVSLKNVLASSPRTIWVPRDNCRLVCAGNSSVPGSSDG----KGGRRGRFSKLDASRQEALARTLRGLSASAR-LPLAGIAGLRAAVRRRASLARMRQ 926
            L+ LPRE+LARS+  L+MVDL QVC V+ DW+ AAEED++WRFWW RRFREDPP QRGRAR GHLK LHRYR +DPLVGDKVEVSWEGRFRLESLDVFVGRSWWEATVVQK+DG+ Y+IHYPGWDSNWDEWVVRDRLRWPVDPSYLST F+VR+VVEVWCTGTHVKGAWLQARVRQIKQDQVSLKNVLASSPRT+WVPR   R VC G S V  SS       GG  GR SKLDASRQEALAR LRGLSA AR LP AG+AGLR AVRRRASL+RMR+
Sbjct:   26 LAGLPRELLARSMELLNMVDLGQVCCVNKDWRNAAEEDAVWRFWWARRFREDPPPQRGRARAGHLKQLHRYRLEDPLVGDKVEVSWEGRFRLESLDVFVGRSWWEATVVQKMDGFKYKIHYPGWDSNWDEWVVRDRLRWPVDPSYLSTTFRVREVVEVWCTGTHVKGAWLQARVRQIKQDQVSLKNVLASSPRTVWVPRSKVRRVCTGASCVNSSSRNGXXXXGG--GRSSKLDASRQEALARALRGLSAGARRLPRAGLAGLRGAVRRRASLSRMRR 301
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BLAST of mRNA_C-linearis_contig8.15661.1 vs. uniprot
Match: W7T606_9STRA (F-box domain-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T606_9STRA)

HSP 1 Score: 170 bits (430), Expect = 5.300e-42
Identity = 87/218 (39.91%), Postives = 128/218 (58.72%), Query Frame = 3 
Query:   96 DMAALSDLPREVLARSLGWLSMVDLAQVCSVSHDWQKAAEEDSIWRFWWTRRFR---EDPPAQRGRARRGHLKNLHRYRYKDPLVGDKVEVSWEGRFRLESLDVFVGRSWWEATVVQKVD-GYMYRIHYPGWDSNWDEWVVRDRLRWPVDPSYLSTVFKVRDVVEVWCTGTHVKGAWLQARVRQIKQDQVSLKNVLASSPRTIWVPRDNCRLVCAGNS 737
            D   ++ LP  VL  +  ++S+ +L    SV   W++  +  ++W+  + +RF        A  G       + L R R  DP VGD VEV+W+G+FRLES+D++ G +WW A VV+K + G  Y+IHYPGWDS WDEWV RDRLRW V+   L+      D VE+WC G++V GAWL+A+VR++K     +  VL+S    +WV R+  R+   G +
Sbjct:  190 DKDRVNKLPSAVLIYTASFMSISELGMAASVCQQWKETVQSVAVWKPLYIKRFHFLHSPDDASTGIGLPLSYQALFRARLLDPHVGDLVEVAWKGKFRLESMDIYQGLAWWSAVVVEKGENGARYKIHYPGWDSRWDEWVARDRLRWTVEQD-LNKRIMPNDDVEIWCCGSNVPGAWLEAKVRKVKGQTYCVGRVLSSG--ALWVNRERVRISPKGGA 404
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BLAST of mRNA_C-linearis_contig8.15661.1 vs. uniprot
Match: A0A4D9D060_9STRA (F-box domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D060_9STRA)

HSP 1 Score: 164 bits (414), Expect = 2.360e-41
Identity = 83/204 (40.69%), Postives = 120/204 (58.82%), Query Frame = 3 
Query:   96 DMAALSDLPREVLARSLGWLSMVDLAQVCSVSHDWQKAAEEDSIWRFWWTRRFR---EDPPAQRGRARRGHLKNLHRYRYKDPLVGDKVEVSWEGRFRLESLDVFVGRSWWEATVVQKVD-GYMYRIHYPGWDSNWDEWVVRDRLRWPVDPSYLSTVFKVRDVVEVWCTGTHVKGAWLQARVRQIKQDQVSLKNVLASSPRTIW 695
            D   ++ LP  VL  +  ++S+ +L    SV   W++  +  ++W+  + +RF        A  G         L R R  DP VGD VEV+W+G+FRLES+D++ G +WW A VV+K + G  Y+IHYPGWDS WDEWV RDRLRW V+   L+      D VE+WC G++V GAWL+A+VR++K     +  VL+S    +W
Sbjct:   68 DKDRVNKLPSAVLIYTASFMSISELGMAASVCQQWKETVQSGAVWKPLYIKRFHFLHSPDDASTGIGLPVSYHALFRARLLDPYVGDLVEVAWKGKFRLESMDIYQGLAWWSAVVVEKGENGARYKIHYPGWDSRWDEWVPRDRLRWTVEQD-LNKRIMPNDDVEIWCCGSNVPGAWLEAKVRKVKGQTYCVGRVLSSG--ALW 268
[Close]
BLAST of mRNA_C-linearis_contig8.15661.1 vs. uniprot
Match: A0A835ZI68_9STRA (Tudor-knot domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI68_9STRA)

HSP 1 Score: 153 bits (387), Expect = 2.020e-38
Identity = 88/226 (38.94%), Postives = 119/226 (52.65%), Query Frame = 3 
Query:  150 WLSMVDLAQVCSVSHDWQKAAEEDSIWRFWWTRRFRED-------------PPAQRGRARRGHLKNLHRYRYKDPLVGDKVEVSWEGRFRLESLDVFVGRSWWEATVVQKVDGYM-YRIHYPGWDSNWDEWVVRDRLRWPVDPS---YLSTVFKVRDVVEVWCTGTHVKGAWLQARVRQIKQDQVSLKNVLASSPRTIWVPRDNCRLVCAGNSSVPGSSDGKGGRR 776
            +LS+ +L  +  +S  W++ +E D +WR  +  RF+               PP           K     R   P VGD+VEV+W G+FRLESL+VF G +WW A VV + D    Y++HYPGW+  WDEWV R+RLRW  D      L    +V D VEVWC G HV GAWL+ RV  I+ D+  L ++LA+   T  +P   CRLV        G  +G+  RR
Sbjct:    3 FLSLPELGTLARLSKSWRQLSEHDYLWREPYKARFKISDSLLAAGSDAAVTPPLS--------CKEAFARRLLHPQVGDRVEVAWRGKFRLESLEVFSGLAWWLADVVARSDDCRRYKVHYPGWEPRWDEWVSRERLRWGNDARAARLLGHPVEVGDTVEVWCGGVHVPGAWLEGRVSCIRSDRAYLGDMLAAG--TFSIPLARCRLVRKAELMARGEEEGETVRR 218
[Close]
BLAST of mRNA_C-linearis_contig8.15661.1 vs. uniprot
Match: A0A835ZFT0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFT0_9STRA)

HSP 1 Score: 154 bits (388), Expect = 4.880e-38
Identity = 92/250 (36.80%), Postives = 131/250 (52.40%), Query Frame = 3 
Query:   54 TMHRFRQSPGAHSSDMAALSDLPREVLARSLGWLSMVDLAQVCSVSHDWQKAAEEDSIWRFWWTRRFREDPP---------AQRGRARRGHLKNLHRYRYKDPLVGDKVEVSWEGRFRLESLDVFVGRSWWEATVVQ-KVDGYMYRIHYPGWDSNWDEWVVRDRLRWPVD---PSYLSTVFKVRDVVEVWCTGTHVKGAWLQARVRQIKQDQVSLKNVLASSPRTIWVPRDNCRLVCAGNSSVPGSSDGK 764
            T H  R S  A S       D+ + +     G         VC VS  W++  E + +WR  +  RF+   P         AQ        +K+L   R   P VGD+VEV+W G+FRLESL+++ G +WW A +V+   DG  Y++HYPGW++ WDE+V R+RLRW  D            V D+VE+WC GT+V GAWL+ RV  I+ ++V L +V+A       V  + CRLV  G +S P  S+G+
Sbjct:   19 TSHLLRSSEPAASLPPGLFLDIAQFLTLEERG-------KAVCCVSRKWRQLGEHNHLWREPYLTRFKFHSPQEDLATHTEAQELAQPGPKVKDLFARRLVRPQVGDRVEVAWRGKFRLESLEIYNGLAWWLAEIVECDADGQRYKVHYPGWEARWDEFVPRERLRWGNDRRAAQLRDERIAVGDMVEIWCGGTNVPGAWLEGRVSSIRGERVFLGDVVAEG--FFSVTEERCRLVSKG-ASAPPQSEGR 258
[Close]
BLAST of mRNA_C-linearis_contig8.15661.1 vs. uniprot
Match: A0A8J2SC81_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SC81_9STRA)

HSP 1 Score: 154 bits (388), Expect = 2.570e-37
Identity = 91/223 (40.81%), Postives = 125/223 (56.05%), Query Frame = 3 
Query:  108 LSDLPREVLARS-LGWLSMVDLAQVCSVSHDWQKAAEEDSIWRFWWTRRFREDPPAQRGRARRGHLKNLHRYRYKDPLVGDKVEVSWEGRFRLESLDVFVGRSWWEATVVQKVDGYM-----------------YRIHYPGWDSNWDEWVVRDRLRWPVDPSYLSTVFKVRDVVEVWCTGTHVKGAWLQARVRQIKQDQVSLKNVLASSPRTIWVPRDNCRLV 722
            L+ LPRE+L  + L  L + +LA + +VS   ++AA  D+ WR  + RRF     A         L+   R R  DP  GD+VE++W GRFRLE L+V+ G +WW A VV+K D                    Y++HY  WD+ WDEWV RD+LRWPV P   + V    D VEVWC+G+ V GAWL+A V  ++ +   + +V ASS R +WV RD  RL+
Sbjct:   83 LAGLPRELLEDAVLANLDVKNLAAMAAVSRAARRAASSDAAWRPQYARRFGAADDASEHFDFGASLRESFRQRLGDPAPGDRVEIAWRGRFRLEGLEVYRGLAWWAAEVVEKRDAXXXXXXAPDCPLDDRRARKYKVHYVHWDARWDEWVARDQLRWPV-PEGRTGVVASGDDVEVWCSGSAVPGAWLRAVVTAVEGELYCVGDV-ASSGR-LWVRRDRVRLI 302
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BLAST of mRNA_C-linearis_contig8.15661.1 vs. uniprot
Match: D7FY36_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY36_ECTSI)

HSP 1 Score: 141 bits (355), Expect = 5.080e-33
Identity = 71/151 (47.02%), Postives = 98/151 (64.90%), Query Frame = 3 
Query:  300 LKNLHRYRYKDPLVGDKVEVSWEGRFRLESLDVFVGRSWWEATVVQKVD--GYMYRIHYPGWDSNWDEWVVRDRLRWPVDPSYLSTVFK-----VRDVVEVWCTGTHVKGAWLQARVRQIKQDQVSLKNVLASSPRTIWVPRDNCRLVCAG 731
             K  ++ R  DP VGD+V+V+W+G+FRLESL+V+ G +WW A VV K +  GY Y++HYPGW+  WDEWVVRDRLRW  +  +L+   K       D VEVWC G HV GAWL+A V ++++++V L  VL S     W   ++ RL+  G
Sbjct:  146 FKGRYKRRLLDPHVGDEVQVAWKGKFRLESLEVYDGTAWWLARVVDKGEKPGY-YKVHYPGWEPKWDEWVVRDRLRWGNE--HLAAPLKGIPLQAGDAVEVWCKGLHVPGAWLEAVVYEVEKERVYLGEVLTSGH--FWARTEHVRLIQKG 291
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BLAST of mRNA_C-linearis_contig8.15661.1 vs. uniprot
Match: A0A7S2XXB7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXB7_9STRA)

HSP 1 Score: 103 bits (256), Expect = 2.310e-22
Identity = 45/88 (51.14%), Postives = 64/88 (72.73%), Query Frame = 3 
Query:  456 YRIHYPGWDSNWDEWVVRDRLRWPVDPSYLSTVFKVRDVVEVWCTGTHVKGAWLQARVRQIKQDQVSLKNVLASSPRTIWVPRDNCRL 719
            Y+IHYPGWD+ WDEWV R+RLRW +  + +   F+V D VEVWCTG++V GAWL+A+V+ IK +Q+ +  +L+S P  +WV +   RL
Sbjct:    1 YKIHYPGWDTRWDEWVPRNRLRWAMHHNPMEN-FQVNDRVEVWCTGSNVPGAWLEAQVKAIKGEQIFVGKMLSSGP--LWVAKTRVRL 85
[Close]
BLAST of mRNA_C-linearis_contig8.15661.1 vs. uniprot
Match: A0A7S2G7I7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G7I7_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 3.290e-11
Identity = 51/195 (26.15%), Postives = 79/195 (40.51%), Query Frame = 3 
Query:  117 LPREVLARSLGWLSMVDLAQVCSVSHDWQKAAEEDSIWRFWWTRRFRE-----------------------DPPAQRGRARRG--------------------------------HLKNLHRYRYKDPLVGDKVEVSWEGRFRLESLDVFVGRSWWEATVVQK-----------VDG--------YMYRIHYPGW 479
            +P  +L     +L   D + +CSV  +W+  +  D+IW   + RRFR                        D P+    A  G                                 +K+L   R +DP+VGD +EVSW+GRFRLE+++++ G +WW+A VV K           ++G          Y++HYPGW
Sbjct:    2 VPVVLLLHLFSFLHTTDHSALCSVCVEWEDLSSSDTIWSGLYRRRFRSKSQNLDGSRDTEPTTPLEASLGLDIPSSLTAAEDGVSTQEEGLSCYETMEERKEEHSLVSDPQAIHTSIKSLFVERLRDPIVGDCIEVSWQGRFRLEAMEIYQGLAWWDAVVVDKERPRNMSAPDRIEGGCSRIPISERYKVHYPGW 196
[Close]
BLAST of mRNA_C-linearis_contig8.15661.1 vs. uniprot
Match: A0A7S3K1B0_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K1B0_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 7.710e-11
Identity = 45/119 (37.82%), Postives = 67/119 (56.30%), Query Frame = 3 
Query:  108 LSDLPREVLARSL-GWLSMVDLAQVCSVSHDWQKAAEEDSIWRFWWTRRFREDPPAQRGRARRG-------HLKNLHRYRYKDPLVGDKVEVSWEGRFRLESLDVFVGRSWWEATVVQK 440
            LS LPREV+  S+  +     LA + SVS  +++ A+ D+ W+  + R F        G ++ G        LK  +  R +DP  GD+VEV+W+GRFRLE L+V+ G +WW A V +K
Sbjct:  136 LSLLPREVVCGSIFAFFPPKQLAHLASVSRGFKQLADSDASWQATYDRAF--------GNSKAGVTYDYGASLKESYHQRIRDPSTGDRVEVAWQGRFRLEGLEVYRGLAWWAAEVAEK 246
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15661.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D8LI95_ECTSI5.320e-14579.86F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
W7T606_9STRA5.300e-4239.91F-box domain-containing protein n=1 Tax=Nannochlor... [more]
A0A4D9D060_9STRA2.360e-4140.69F-box domain-containing protein n=1 Tax=Nannochlor... [more]
A0A835ZI68_9STRA2.020e-3838.94Tudor-knot domain-containing protein n=1 Tax=Tribo... [more]
A0A835ZFT0_9STRA4.880e-3836.80Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A8J2SC81_9STRA2.570e-3740.81Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
D7FY36_ECTSI5.080e-3347.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2XXB7_9STRA2.310e-2251.14Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2G7I7_9STRA3.290e-1126.15Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S3K1B0_9STRA7.710e-1137.82Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:2289315..2296057 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score443.4
Seed ortholog evalue8.8e-122
Seed eggNOG ortholog2880.D8LI95
Hectar predicted targeting categoryother localisation
EggNOG OGs2D67V@1,2T127@2759
Ec32 ortholog descriptionF-box and Chromo domain-like protein
Ec32 orthologEc-14_003660.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size2873
Cds size909
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930546.201027-UTR-C-linearis_contig8:2289314..22912221622930546.201027-UTR-C-linearis_contig8:2289314..2291222Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2289315..2291222 -
1690881125.239401-UTR-C-linearis_contig8:2289314..22912221690881125.239401-UTR-C-linearis_contig8:2289314..2291222Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2289315..2291222 -
1622930546.2929778-UTR-C-linearis_contig8:2296001..22960571622930546.2929778-UTR-C-linearis_contig8:2296001..2296057Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2296002..2296057 -
1690881125.3159497-UTR-C-linearis_contig8:2296001..22960571690881125.3159497-UTR-C-linearis_contig8:2296001..2296057Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2296002..2296057 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930546.2148383-CDS-C-linearis_contig8:2291222..22915521622930546.2148383-CDS-C-linearis_contig8:2291222..2291552Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2291223..2291552 -
1690881125.254055-CDS-C-linearis_contig8:2291222..22915521690881125.254055-CDS-C-linearis_contig8:2291222..2291552Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2291223..2291552 -
1622930546.2294564-CDS-C-linearis_contig8:2292030..22922111622930546.2294564-CDS-C-linearis_contig8:2292030..2292211Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2292031..2292211 -
1690881125.271037-CDS-C-linearis_contig8:2292030..22922111690881125.271037-CDS-C-linearis_contig8:2292030..2292211Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2292031..2292211 -
1622930546.2476444-CDS-C-linearis_contig8:2292557..22926951622930546.2476444-CDS-C-linearis_contig8:2292557..2292695Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2292558..2292695 -
1690881125.2823524-CDS-C-linearis_contig8:2292557..22926951690881125.2823524-CDS-C-linearis_contig8:2292557..2292695Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2292558..2292695 -
1622930546.2620738-CDS-C-linearis_contig8:2295181..22953211622930546.2620738-CDS-C-linearis_contig8:2295181..2295321Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2295182..2295321 -
1690881125.292443-CDS-C-linearis_contig8:2295181..22953211690881125.292443-CDS-C-linearis_contig8:2295181..2295321Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2295182..2295321 -
1622930546.2785773-CDS-C-linearis_contig8:2295881..22960011622930546.2785773-CDS-C-linearis_contig8:2295881..2296001Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2295882..2296001 -
1690881125.3033917-CDS-C-linearis_contig8:2295881..22960011690881125.3033917-CDS-C-linearis_contig8:2295881..2296001Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2295882..2296001 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15661.1prot_C-linearis_contig8.15661.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 2291223..2296001 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15661.1

>prot_C-linearis_contig8.15661.1 ID=prot_C-linearis_contig8.15661.1|Name=mRNA_C-linearis_contig8.15661.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=303bp
MHRFRQSPGAHSSDMAALSDLPREVLARSLGWLSMVDLAQVCSVSHDWQK
AAEEDSIWRFWWTRRFREDPPAQRGRARRGHLKNLHRYRYKDPLVGDKVE
VSWEGRFRLESLDVFVGRSWWEATVVQKVDGYMYRIHYPGWDSNWDEWVV
RDRLRWPVDPSYLSTVFKVRDVVEVWCTGTHVKGAWLQARVRQIKQDQVS
LKNVLASSPRTIWVPRDNCRLVCAGNSSVPGSSDGKGGRRGRFSKLDASR
QEALARTLRGLSASARLPLAGIAGLRAAVRRRASLARMRQAGAGVGAGMG
AV*
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mRNA from alignment at C-linearis_contig8:2289315..2296057-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15661.1 ID=mRNA_C-linearis_contig8.15661.1|Name=mRNA_C-linearis_contig8.15661.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=6743bp|location=Sequence derived from alignment at C-linearis_contig8:2289315..2296057- (Chordaria linearis ClinC8C monoicous)
GTGGGTTTTACCTCCGTGGTCTCCCCCCCCCCATCCTCTGCGCGCACTCC
GAGACCATGCACCGCTTCCGCCAGTCGCCGGGAGCACACTCTAGCGATAT
GGCGGCTTTGTCGGATTTACCCCGTGAGGTGCTTGCGCGTTCGTTGGGCT
GGCTCAGCATGGTCGACCTCGCGCAGGTAAGGGCGAGAACGCGACAGCAG
GTGGAAGGATTGTTACAGCATTCAGCGGTTTGCGTCTTCGGGAGTTGCCG
TTATCCAGCACACGAAATCGACGTTGGATAACACGGCGCCAATCCTGCGG
TGTGTCCCCCGCGCCCTCTTGCCACGCACCCGCTAGGAGATCAGTCGTGA
ACAGCCGTCAACAACACGCAGTTTCTGCGCAGTTTTTGAACCATGGTGAT
GGGTGTGTTCGCCAGATTTTTGGTGACTCTCGAGAGGAGGGAGGCCAAAA
GGCTTGTGAAGAAGGAACGCCGACTCGCTTCAACCACCTCTCGCCTCCCC
AGTCAACCCTCTCCTCCTCGCCCCTCTACAAGCTCGGTCTCCTAATGTCC
GATGAACATCCTCTGTCACGCAATGTGCATCTAGCATGTACTCTGTCACG
CAATGATGTAAATCTATCATGTATCTGCGTGCGTCGTGTTTTCAAAATAT
CAAACTCAAACTTCCGCCGCCCGGCCGTTCGCCGACCCCACGTGGGGAAA
ATGTCCGCCGTACACATATGATCATATGATACATAGGTTTGCTCAGTGAG
CCATGACTGGCAAAAAGCTGCCGAGGAGGACAGCATCTGGAGATTCTGGT
GGACTCGCCGTTTCCGAGAAGACCCGCCGGCGCAAAGGGGGAGGGCACGC
AGAGGGCATCTCAAGAACCTGCACCGGTGAGATACGATAGACTGCTGCTG
TGATAGTACAGCAGTCGACCCCGCTTTAAGGACGCTCATAGTAGTTTTTC
CCGAAAAAAAGCGCGGCTGCGTCCTTAAAATTCAGGGGACGATAGCTCAC
CACCCCCGGGTCCAATGGAGGCATACAATACCTCAAACTACGCGTCTATG
TATTGACAAGGAATGGTGTGGTACGAACAGACGCCGAGACGATGGGCAAC
CGTTTGTTGTCGTCGAATATACTGACTTAATTAAAACTATATTATAGGTG
TTTTTTATTTTTTTTAATTAATTAATTGTTTGTTTGGAGCAGACAATATG
AGACGTTTTGAAAACGAAGAACAAGCACACACGTGTGTACTATTTACAGC
AGTCTCATGTACGCTTAGCGGGCAGTGGGACAAGGAGTAAAGTCCAGGTA
GAAATGTATTCACCACATCTTTGTGAAAACCAAAATAGCTTGTTATTTAA
GCAGCACCGAGGTACAGCAGTAGCAATATGTACACGAAAAAACTACTGTC
CCGGAGCCAAGCTACCCTGACGGCTTTTCCCTCCACATATCGCGAAGATT
TCCCTGAACCTCCCCCCGCGGCTTGGCCCTACGGCTCAGTTGAATTTTAA
GAGTAAACGAATGCACGGCCTTCGAAAGAAGGTACCGCGTCGCACGGTAC
TCGCCATCCTTTCCCTTCGCGTACAAATAGGAGCGGACTTCCGGCATCAG
ATGAACCGGCCGAAGATGAGGGGAATCTATTTATACCAACACCCGTTCAA
GGCCGCAGCGGCAGACCGCTCGCTACTTCTGTGTGCAAAAAAACGCACCA
AACATGAACGCTGAACACAAAAAGGGGGGGGCGTGTTGTGAATCGAGTGG
GTACCCTCATATTGTGCATTCTGTCGGGCTCCCTGGTTCTCAGAAAAAAG
TCGTCCTTTACGCGGGGAGTTTCCTTAACGAGAGCGTCCTTAGAGCGGGG
TCGACTGCATGTACGACGATGATAAAAAATGACGCAAATTACGGAGGGTT
TTGCCGCCGCCAAACAACTGCTTTTTCTTGCGGGAGGAATGGGACGGGGG
CGCCAGGACCAAAAGGACATGGGCTAGCATGATTTGTTCCCTGCCACGAA
GGATTTGAATTTGGGGATCTCCTCTTCCTTTCACTCTATTGCGTTGTCGG
GGTCGCTAGCAAGTTTTGAGGGGCAACGCGCGAGGCGTCAACCGGCCAGT
CAACGTCCGGTTTATCTACATATTTACTCCAAAAACAACAACAAATGACT
GACAGTCGGGCGGCATGCGGCATGTGGGTTTTGGTGGATTCGGGCGGACT
CGGGCAAATAGGCACGCAAGGCAAGGTCGGCGCGTTGCCACCCAGCGTGT
ATGTATACTACTGCTGTGTTGTTGTTCTTTCATCGTGTGTCTACATGCGT
GTCTTACCTATGACCCTAACGCACCGAGCGAGGGAGAGCGCAACGACTCG
AAACACATCAACCTTGATGTGTTTTTTTAGCTAGTTTTTTTGGATCACAG
AGCAGTGCTAGTATCTGCGTACACAGCAGAGAGATTTCGATTTGACAGTT
GCACAAGTTTTGAAGCAACAACCGAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGTACTCAGCCCCCCCCCCGTCTGCGCT
GTTTTTTCGGCAGCAGCGAGTCGTGTTTGCACTATATTTGACTTGCGAGG
AGGTTCAACAGCTAAATATCGAGTGATACGCAGCAGTACTATAGCCCGGA
GAGTCCCCAACGGTGCTTCAGGGGCTCGCGCTGTTGGCTGTTGCCGCTAT
CATCACAAGAACGATTGTGGTCGTGCGTCTCCTATCAGCCCGCGGCTTTT
TCCCCGTGTCTGTTTCCGTGATATTTGGCAAAGAGGGAGACGGCACGAGA
GACCGGGCAAAGGTTTATGTTTGTCGTGGCAACGAAGCACCTGTTCGAAT
GTACCAGGCCGGGGGCAGGACACCACACTCGACTGGCTGGCCCATGGTTC
CACGCGTCATAACTTGCCCATGAAAGCACGGTGAAAGTGATTGATCGCGA
TTTGAAACAGAAAATCAATGGCTAGACCAAGGAGAGCACACATGACGGTG
GAGATTCCCAGTGTCGTGAACGTGCCGTCACCAAAAAAACTTATTTGACT
GTCATGTTTCCACTATGTATTATCGCAAAAAAATCCGAATGATCCCAGGA
AAAACATCCGAAGCCTGTGTGATCATCTCTCTCTGCTCCAGAGTCTGTGG
GTGCATCAGACCACACACGCGTACACACACATACACACTCACACACACAC
GGGCAGGGTGCTAAGAAAGTGCCTTGCCACGTTTGCTGCTATTGCTGTCG
CTACCGAAACTTGATATCTCGTTTTCCGAACGTCCATGCCGCCGCCCCTC
TGCTCGCCTCGTTCGCGCTGTGCCTCGTGGTGGTCACAACGAATAAAAAA
CGAAAAAAACAGCTACCGATACAAAGACCCTCTGGTGGGCGACAAGGTGG
AGGTTTCATGGGAGGGACGGTTTCGCCTGGAGTCCTTGGACGTGTTCGTT
GGCAGATCGTGGTGGGAGGCGACGGTGGTGCAGAAGGTCGACGGTTACAT
GTGAGCAGGGAAAGCTAAAGATCGCGTGGTGGTTCTGCTGTGTTGTTTTC
TATAATAGCTTCTTACGACTGCCGTGCAGAGAGGTATTTGTGCATTTTTT
TTTGGTGTGTGTCCACAGCAGTGGCATCATGCCCTGCGCTATTTCCTTTG
TCGGCCGACAAAATCGGGCATGTCTACTTGTGACTGCGACAGCTTCTGCC
ACACCCCACATACTCACTTGAACAAGCCTTCTGGCAGCATAAAACTGACT
CTTAGCCACTTTTCAAGCGCCTAATCGCAACGGACCGCTGGCACACCCAC
CGCTCACCCTCTCCCCGCCCCGCCCCGCCTATCGTCACCCCAAAAGGTAC
CGCATTCACTACCCCGGGTGGGACAGCAACTGGGACGAGTGGGTGGTTCG
CGACCGCCTCCGGTGGCCGGTCGACCCCTCCTACCTGTCGACTGTCTTCA
AGGTCCGGGACGTGGTTGAGGTGTGGTGCACGGGCACGCACGTCAAGGGG
GCTTGGCTGCAGGCTAGGGTCCGGCAGGTAAATTTACGCGTTCGTTGGCA
TGCGATTTACCAAAGATGGGCGGACGGGTTCCTGGAGAGTGGCGGGGGGG
GGGTACTGCGTATGCCCCGGTCGTGTGGTGGTGTATGGTGGTGTGTGAAG
AGGTTCGAAAAGCCTTCGATGTTTTTGGCAGACGGTGGTGAGGATTGGAA
TATCGTGTGACACACACGCACACACCTGCCCTTGTGCGTAGGCTATGCAT
CACCGCCGCTTCGGCTTTGCACGGCACGGGCTGTTTGGGCGTGGACGTGC
TTTCGATTTTGTAGTGCATACCTGTCGATGTACTCGATACATTTGCGGCG
AAATTCGAACTGAACGACGGTATATCTCACAGGCGGCCCCTGATCCTTTC
CGCCCGTGTGACATCCGCAACGCCCACGACCTCTCTCACTCCCATCCCAC
CCGCCCTTCTTCCCTCGATCATCGACGCCAACACACCGAAACACAAACAC
AACAGATAAAGCAAGACCAGGTTAGCCTGAAGAACGTGCTGGCCTCGTCC
CCGCGGACCATCTGGGTACCCCGGGACAACTGCCGCCTCGTGTGCGCGGG
CAACTCCTCCGTCCCCGGGTCGTCGGACGGCAAGGGCGGGCGGCGCGGCC
GCTTTTCCAAGCTGGACGCCTCCCGCCAGGAGGCCCTGGCGAGGACCCTA
CGAGGGCTGTCCGCCAGCGCCAGGCTGCCCCTCGCAGGGATCGCGGGGCT
GCGCGCGGCGGTGCGTAGGCGCGCCAGCCTTGCCAGAATGAGGCAGGCGG
GCGCGGGCGTTGGCGCGGGCATGGGTGCTGTTTGAGGCGATGCTTTGGTT
CTCTCCGGAGCACAGCCGCGGAAGTTTTTTTTTTTTTATTGTGGGTCGTG
TATCACGTATCGGTTGTTTTTATTCCTCGGCGTTGGGGACACATGAGGTG
CCGATGGCGGTTGTGTGGCGTAACGCAGTGTTTCGTGGCTGGGTATGAGG
TGGGGTGTGGGTGTTTGGGACATTTCGTCTCCAGGGGCAGCGCGAAATGT
CTTATACTGCTGTCGCGACCGGCGGCGTGGTCGTGGCGTCGTGGGGGCGG
AGCTCTGGCTGGGAATGGGCTCGTACTGAGAAGAATATCGATCCGCGACG
TTGTCCGGGAGGAAGGAATGGATGTCCCGCGGGCGGGACTTGGTCGGCCG
CGAGGAGCGAGGGCGTGCCGGTAGGTCACCCGTGGTGTAAAGGAAAGCAA
GGCGTGTCATTGAGATGAGGTTTCGGCGTTTTGGGTGCTGTCTAAAAGTA
CGGTCGAGGAGTGTGGGTGCATCACGATTTCTCCCCCCCCCCCGGTGATT
TTTGTTTGCGGTTGGAAGGGAGGCCCGCACGAGAGCGTGGAAGGGGGCGG
GAGAGGCCGGCACCGCTGGTTCACGGACGGATTGCTCGCGGATGGATGCA
ATATGATGGCGCCGAGAGCTCGGCGGGTAGTGGCCCTTTTCTCGTCCACT
CTTATTACATACCAATGGAGAGGTTAAGGGTTTCCTCCTTAGTGGAGGGC
CGCTCACCGCCAACCTCTCAGCTTCGTGTTGTCGTGACCATCGAATGACT
TGTACGTGCAACGGTGCGCCGACCCGGGGCCAACCAAGTAGGGAGCGTGT
GGTCGCTGCCGAATGGCCTTTGTCTTGTGTTTGATACGTAGGTTGTGGGG
TGGGCAAGGTAGTATTCTGGTTGATCTTGGGCATTCATTCTTGGTCGTTT
TCACGAGAAGCTGCTTCATCTTGGGGTGCGGTGCGGTGAGCGTCGTCTAC
GGACTCTGTAGTTTTTTGTTTTTGCTTCTTTGGCCGCTCACCCTTTTTTG
CTTTCTCCGTTTCATCTAATCTCTGACGATGTGGCGGGTAAGGTAAATGA
GTTTTTGCGTACGTTAAGTGTTTTCAGCGAGGCTAGGCTGTGCTGTGTAC
CTACAAGACACGTGTTGAGATCACAAAAATTATCTCTGCAATAATATGCA
GCTTCGCTTTGTTTGCTGGCAGTGCTTTCCCTTCTAAGGCACGAATCTGT
AGTTTGGAGGCCTGATTTCCAGTTACGCTTTCCCGCATCTGTGTAACTGC
GGTAGTAGGTCATCTTGTTTTGTACAGTTGTTGTTCGGTAGAAAATTGTT
GCACCGCGGTATTTTTGGGTTTCGGAGCGATGGAACCAGAGGAAAATCCC
GAAAAGAGAGTGCCACTACTTGTGTCTTTTTCCAGCCACGTTTGAGGGGT
AGCATAGTCGTACAGGGGGTGGGGCAGGAGGGCAGGATGCGGGCATTAGT
GCCACAAAGTCGATATCAGTGTGTCATGCATCTAGCCTTGCCGAAGGGTA
CCGTAGGATATTTTTGTCTCCAGCAGCGTGCTGGCACAATTCCACAGTGT
TGAATGAGATGCATGGGTCGAAGCGTCGTAGTTGCTCATCTGTAAAACAG
CTCAAAAGTTTGTAGCTCACAAGTGTGCACCGGGAGTTAGTAGTCCAGTC
CAGAGCTCAGGTAGTGGAGCGTTGTGTAGCTTCTCTTTGAAAATTGATAC
ACAAGTCCGTTGAACCCGTTGAAAGTATAGTTTTCCGAAAACCTAAAAAA
AGCTGTGCTTACAAGGTTCGTCGGTGTATCGATTCTTGTGCCCATGTCGC
TGTTCTTCGAAGTGAGCATGGAGATGAATGTTTTCTTTTCCCCACCATGG
TTGTGCTAGAACCACGTCCTAAACGTGAAAAAGGCATCCGCGG
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Coding sequence (CDS) from alignment at C-linearis_contig8:2289315..2296057-

>mRNA_C-linearis_contig8.15661.1 ID=mRNA_C-linearis_contig8.15661.1|Name=mRNA_C-linearis_contig8.15661.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1818bp|location=Sequence derived from alignment at C-linearis_contig8:2289315..2296057- (Chordaria linearis ClinC8C monoicous)
ATGCACCGCTTCCGCCAGTCGCCGGGAGCACACTCTAGCGATATGGCGGC
TTTGTCGGATTTACCCCGTGAGGTGCTTGCGCGTTCGTTGGGCTGGCTCA
GCATGGTCGACCTCGCGCAGATGCACCGCTTCCGCCAGTCGCCGGGAGCA
CACTCTAGCGATATGGCGGCTTTGTCGGATTTACCCCGTGAGGTGCTTGC
GCGTTCGTTGGGCTGGCTCAGCATGGTCGACCTCGCGCAGGTTTGCTCAG
TGAGCCATGACTGGCAAAAAGCTGCCGAGGAGGACAGCATCTGGAGATTC
TGGTGGACTCGCCGTTTCCGAGAAGACCCGCCGGCGCAAAGGGGGAGGGC
ACGCAGAGGGCATCTCAAGAACCTGCACCGGTTTGCTCAGTGAGCCATGA
CTGGCAAAAAGCTGCCGAGGAGGACAGCATCTGGAGATTCTGGTGGACTC
GCCGTTTCCGAGAAGACCCGCCGGCGCAAAGGGGGAGGGCACGCAGAGGG
CATCTCAAGAACCTGCACCGCTACCGATACAAAGACCCTCTGGTGGGCGA
CAAGGTGGAGGTTTCATGGGAGGGACGGTTTCGCCTGGAGTCCTTGGACG
TGTTCGTTGGCAGATCGTGGTGGGAGGCGACGGTGGTGCAGAAGGTCGAC
GGTTACATCTACCGATACAAAGACCCTCTGGTGGGCGACAAGGTGGAGGT
TTCATGGGAGGGACGGTTTCGCCTGGAGTCCTTGGACGTGTTCGTTGGCA
GATCGTGGTGGGAGGCGACGGTGGTGCAGAAGGTCGACGGTTACATGTAC
CGCATTCACTACCCCGGGTGGGACAGCAACTGGGACGAGTGGGTGGTTCG
CGACCGCCTCCGGTGGCCGGTCGACCCCTCCTACCTGTCGACTGTCTTCA
AGGTCCGGGACGTGGTTGAGGTGTGGTGCACGGGCACGCACGTCAAGGGG
GCTTGGCTGCAGGCTAGGGTCCGGCAGGTACCGCATTCACTACCCCGGGT
GGGACAGCAACTGGGACGAGTGGGTGGTTCGCGACCGCCTCCGGTGGCCG
GTCGACCCCTCCTACCTGTCGACTGTCTTCAAGGTCCGGGACGTGGTTGA
GGTGTGGTGCACGGGCACGCACGTCAAGGGGGCTTGGCTGCAGGCTAGGG
TCCGGCAGATAAAGCAAGACCAGGTTAGCCTGAAGAACGTGCTGGCCTCG
TCCCCGCGGACCATCTGGGTACCCCGGGACAACTGCCGCCTCGTGTGCGC
GGGCAACTCCTCCGTCCCCGGGTCGTCGGACGGCAAGGGCGGGCGGCGCG
GCCGCTTTTCCAAGCTGGACGCCTCCCGCCAGGAGGCCCTGGCGAGGACC
CTACGAGGGCTGTCCGCCAGCGCCAGGCTGCCCCTCGCAGGGATCGCGGG
GCTGCGCGCGGCGGTGCGTAGGCGCGCCAGCCTTGCCAGAATGAGGCAGG
CGGGCGCGGGCGTTGGCGCGGGCATGGGTGCTGTTTGAATAAAGCAAGAC
CAGGTTAGCCTGAAGAACGTGCTGGCCTCGTCCCCGCGGACCATCTGGGT
ACCCCGGGACAACTGCCGCCTCGTGTGCGCGGGCAACTCCTCCGTCCCCG
GGTCGTCGGACGGCAAGGGCGGGCGGCGCGGCCGCTTTTCCAAGCTGGAC
GCCTCCCGCCAGGAGGCCCTGGCGAGGACCCTACGAGGGCTGTCCGCCAG
CGCCAGGCTGCCCCTCGCAGGGATCGCGGGGCTGCGCGCGGCGGTGCGTA
GGCGCGCCAGCCTTGCCAGAATGAGGCAGGCGGGCGCGGGCGTTGGCGCG
GGCATGGGTGCTGTTTGA
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