prot_C-linearis_contig8.15626.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig8.15626.1
Unique Nameprot_C-linearis_contig8.15626.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length357
Homology
BLAST of mRNA_C-linearis_contig8.15626.1 vs. uniprot
Match: D7FJF4_ECTSI (Signal recognition particle receptor subunit beta n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJF4_ECTSI)

HSP 1 Score: 386 bits (991), Expect = 2.200e-130
Identity = 216/296 (72.97%), Postives = 236/296 (79.73%), Query Frame = 0
Query:   73 VSGGVEQALASSKENAITALSLLDSLLASLGPFLAEHGLPSASIVLGGVAIAVLFLLFLSQVGIGGGGGRTSK-KRKGVVLFLGPCGSGKTAMCYRLSHGGGQAAASTVATVTSMEACRYPCSPPRCS------------SADTALLVDYPGHGRLRGGVGQELRGADRIVFMLDGSSLAAQVAAGAELLYDVLTDPSLEGCRGLMLALSKSDLKEAKAPRAKMLLQKELDKLRGTRGMLGTQGEEDDMPSAVALGRPGQPFSLEIDSPCEVVAAGCSVVKEGGLESVLEFVRASL 355
            ++G V QALAS+ + A   LS L+SLLASL  FLAE+GLPSAS+V  GVAIA+  L+ L +VGI          KRKGVVLFLGPCGSGKTAMCYRLSHGG       V T TSMEACRYPCS  R S            SA +  LVDYPGH RLRGGVG+ELRGADR+VFMLDGS LAAQVAAGAELLYDVLTDPSLEGC+GLMLAL+KSDLKEAKA RAK LLQKELDKLRGTRGMLGTQGEEDDMP A+ALGRPGQPFSLE+DSPCEVV AGCSV KEGGL+SV++FVRASL
Sbjct:   66 IAGVVAQALASNSDKAAAVLSQLESLLASLESFLAEYGLPSASLVFPGVAIAIFLLVLLGKVGIXXXXXXXXXXKRKGVVLFLGPCGSGKTAMCYRLSHGG---ETGLVPTATSMEACRYPCSSGRLSELLARNGNGPSSSARSGSLVDYPGHERLRGGVGEELRGADRVVFMLDGSCLAAQVAAGAELLYDVLTDPSLEGCQGLMLALNKSDLKEAKASRAKTLLQKELDKLRGTRGMLGTQGEEDDMPVAMALGRPGQPFSLEVDSPCEVVVAGCSVAKEGGLDSVVDFVRASL 358          
BLAST of mRNA_C-linearis_contig8.15626.1 vs. uniprot
Match: A0A835YTM3_9STRA (Signal recognition particle receptor subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTM3_9STRA)

HSP 1 Score: 139 bits (350), Expect = 2.070e-36
Identity = 75/155 (48.39%), Postives = 101/155 (65.16%), Query Frame = 0
Query:  199 SSADTALLVDYPGHGRLRGGVGQELRGADRIVFMLDGSSLAAQVAAGAELLYDVLTDPSLEGCRGLMLALSKSDLKEAKAPRAKMLLQKELDKLRGTRGMLGTQGEEDD--MPSAVALGRPGQPFSLEIDSPCEVVAAGCSVVKEGGLESVLEFV 351
            SS  +  + D+PGH RLRGG+  EL  +  ++FMLDG+ L++QV  G E+LYD+LTD S+E C+GL +  SK+DLK AK  R +  L KEL++LR TR  +G QGEED     S + LGR GQP  L +D PC +    CSV  EG L +V +F+
Sbjct:   20 SSKGSVTVTDFPGHERLRGGLRGELATSTAVIFMLDGTDLSSQVRLGGEMLYDILTDSSIERCKGLAIGCSKADLKVAKPDRVRAALTKELEQLRTTRWSIGMQGEEDTGRPNSFIPLGRQGQPLDLVVDCPCPLTVFTCSVKGEG-LNAVRDFI 173          
BLAST of mRNA_C-linearis_contig8.15626.1 vs. uniprot
Match: A0A6G0XMT9_9STRA (Signal recognition particle receptor subunit beta n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XMT9_9STRA)

HSP 1 Score: 124 bits (311), Expect = 6.110e-30
Identity = 90/237 (37.97%), Postives = 135/237 (56.96%), Query Frame = 0
Query:  121 VAIAVLFLL--FLSQVGIGGGGGRTSKKRKGVVLFLGPCGSGKTAMCYRLSHGGGQAAASTVATVTSMEACRYPCSPPRCSSADTALLVDYPGHGRLRGGVGQELRGADRIVFMLDGSSLA--AQVAAGAELLYDVLTDPSL-EGCRGLMLALSKSDLKEAKAP-RAKMLLQKELDKLRGTRGMLGTQGEEDDMPSAVALGRPGQPFSLEIDSPCEVVAAGCSVVKEGGLESVLEFV 351
            VA  VL LL  F+ ++   G G R    ++ V+L LGPCGSGKTA+ +RL  G     A +V TVTSM+       P          ++D+PGH RLR    Q    A +IVF++D ++++   QV   AE L+D+ T P L +    +++A SK+D   A AP R ++LL+ EL +L+GTR  L TQ +++ +P    LGR   PF+ ++D+PCEVV    S+    G+  +L+F+
Sbjct:   16 VAGVVLLLLVAFIIKLAASGSGPRG---KRDVILLLGPCGSGKTALFHRLRDG-----AVSVETVTSMKE-TMETFPLHDEETANVSVLDFPGHERLRSQAPQFYPIAKKIVFIVDATTVSDPLQVRKAAEFLFDIFTHPKLNDNGIPVLIACSKADQATAAAPSRIQLLLEAELTQLKGTRASLDTQDDDESIP----LGRENVPFAFDVDAPCEVVFESYSIHTPNGVAPLLDFI 239          
BLAST of mRNA_C-linearis_contig8.15626.1 vs. uniprot
Match: A0A1V9ZHQ0_9STRA (Signal recognition particle receptor subunit beta n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZHQ0_9STRA)

HSP 1 Score: 122 bits (305), Expect = 4.640e-29
Identity = 88/241 (36.51%), Postives = 130/241 (53.94%), Query Frame = 0
Query:  119 GGVAIAVLFLLFLSQVGIGGGGGRTSKKRKGVVLFLGPCGSGKTAMCYRLSHGGGQAAASTVATVTSMEAC--RYPCSPPRCSSADTALLVDYPGHGRLRGGVGQELRGADRIVFMLDGSSL--AAQVAAGAELLYDVLTDPSLEGCR-GLMLALSKSD-LKEAKAPRAKMLLQKELDKLRGTRGMLGTQGEEDDMPSAVALGRPGQPFSLEIDSPCEVVAAGCSVVKEGGLESVLEFVRA 353
            G  A A L L F+      GG G  S KR  +VL +GPCG+GKTA+ +RL  G      + V TVTSM+    ++P      +   T  + D+PGH R+R   GQ    A +I+F++D ++   A  +   AE LYD+ T P +      +M+A SKSD  K A +   + LL+ EL +L+ TR  L   GE+D+   ++ LGR   PF+ +ID+PCEV     S+V    L  +L+F+ +
Sbjct:   14 GAAAGAALVLFFVLLKLCSGGSGIRSSKRD-IVLLVGPCGAGKTALFHRLRDG-----PTKVTTVTSMKETMEKFPLFDEENA---TFNICDFPGHERMRSQAGQFYPIAKKIIFVVDSTTANDAGHIRKAAEFLYDIFTHPKVNDAGVPVMIACSKSDETKAATSATVRSLLESELTQLKSTRASLEAHGEDDE---SIPLGRDNAPFAFDIDAPCEVTFENYSIVTPEALNPLLDFIMS 242          
BLAST of mRNA_C-linearis_contig8.15626.1 vs. uniprot
Match: A0A024TLZ7_9STRA (Signal recognition particle receptor subunit beta n=7 Tax=Aphanomyces TaxID=100860 RepID=A0A024TLZ7_9STRA)

HSP 1 Score: 117 bits (294), Expect = 1.760e-27
Identity = 87/235 (37.02%), Postives = 127/235 (54.04%), Query Frame = 0
Query:  121 VAIAVLFLLFLSQVGIGGGGGRTSKKRKGVVLFLGPCGSGKTAMCYRLSHGGGQAAASTVATVTSMEACRYPCSPPRCSSADTALLVDYPGHGRLRGGVGQELRGADRIVFMLDGSSL--AAQVAAGAELLYDVLTDPSL-EGCRGLMLALSKSDLKEAKAP-RAKMLLQKELDKLRGTRGMLGTQGEEDDMPSAVALGRPGQPFSLEIDSPCEVVAAGCSVVKEGGLESVLEFV 351
            VA AVL LL    + +   G     KR  V+L LGPCG GKTA+ +RL  G      S V TVTSM+       P     A T  ++D+PGH RLR  V Q    A ++VF++D +++  AAQV   AE LYD+   P + +    L++A SK+D+  A  P   + LL+ EL +L+ TR  L    +++ +P    LGR   PF+ ++D+PCEVV    S+     +  +L+F+
Sbjct:   16 VAGAVLVLLLAFIIKLAASGSSPGGKRD-VILLLGPCGGGKTALFHRLRDG-----PSKVDTVTSMKE-TLETFPLFDEEAATVSVLDFPGHERLRSQVSQFYPIAKKLVFVVDATTVGDAAQVRKAAEFLYDIFVHPKVHDNGIPLLVACSKADVATAATPSHIQSLLETELSQLKSTRASLEAHDDDESIP----LGRENVPFAFDVDAPCEVVFESYSIHSAEAIAPLLDFI 239          
BLAST of mRNA_C-linearis_contig8.15626.1 vs. uniprot
Match: A0A485KDV8_9STRA (Signal recognition particle receptor subunit beta n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KDV8_9STRA)

HSP 1 Score: 117 bits (294), Expect = 1.810e-27
Identity = 89/235 (37.87%), Postives = 131/235 (55.74%), Query Frame = 0
Query:  121 VAIAVLFLLFLSQVGIGGGGGRTSKKRKGVVLFLGPCGSGKTAMCYRLSHGGGQAAASTVATVTSMEACRYPCSPPRCSSADTALLVDYPGHGRLRGGVGQELRGADRIVFMLDGSSLA--AQVAAGAELLYDVLTDPSLEGCR-GLMLALSKSDLKEAKAP-RAKMLLQKELDKLRGTRGMLGTQGEEDDMPSAVALGRPGQPFSLEIDSPCEVVAAGCSVVKEGGLESVLEFV 351
            VA AVL LL    + +   G     KR  V+L +GPCG GKTA+ +RL  G     + T+ TVTSM+            SA+ ++L D+PGH RLR  V Q    A ++VF++D ++++  AQV   AE L+DV T P L      +++A SKSDL  A AP R + LL+ EL +L+ TR  L    +++ +P    LGR   PF+ ++D+PCEVV    S+     +  +L+F+
Sbjct:   16 VAGAVLLLLVAFIIKMAASGSGPGGKRD-VILLVGPCGGGKTALFHRLRDG----PSPTLETVTSMKETLESFPLFDEDSANVSVL-DFPGHERLRSQVSQFYPIAKKLVFVVDSTTVSDPAQVRKAAEFLFDVFTHPKLNDTAIPVLIACSKSDLTTAAAPGRIQSLLEAELTQLKSTRASLEAHDDDESIP----LGRDNVPFAFDVDAPCEVVFETYSIHSAEAIAPLLDFI 240          
BLAST of mRNA_C-linearis_contig8.15626.1 vs. uniprot
Match: A0A7S2DSR0_9STRA (Signal recognition particle receptor subunit beta n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DSR0_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.910e-26
Identity = 73/204 (35.78%), Postives = 115/204 (56.37%), Query Frame = 0
Query:  151 VLFLGPCGSGKTAMCYRLSHGGGQAAASTVATVTSMEACRYPCSPPRCSSADTALLVDYPGHGRLRGGVGQELRGADRIVFMLDGSSLAAQVAAGAELLYDVLTDPSLEGCRGLMLALSKSDLKEAK-APRAKMLLQKELDKLRGTRGMLGTQGEEDDMPSAVALGRPGQPFSLEIDSPCEVVAAGCSVVKEGGLESVLEFVRA 353
            VL +GPCG+GKT +  +L +GG         TVTSM      C+     +     ++D+PGH R R  +  +L GA  +V ++D S+ + QV   ++LL+ VLT P L     +++  +K D++ +K A R K+LLQKEL+ +R TRG +  +GE+    S + LG+ G+PF  + D P    A+G ++  EGGL  +  F+ A
Sbjct:    7 VLLIGPCGAGKTVIFQQLCYGG------VAETVTSMSPAHSECTMGSKDAPKKINVIDFPGHMRQRPALLGQLSGAKGVVVVVDSSN-SKQVKEASDLLFSVLTAPLLPHSTSVLVFCNKMDVEGSKSADRVKVLLQKELETMRNTRGSMSQEGEDGSKGSRM-LGQEGRPFRFDHDMPNITFASGTALAGEGGLSELTTFLTA 202          
BLAST of mRNA_C-linearis_contig8.15626.1 vs. uniprot
Match: A0A067D7V6_SAPPC (Signal recognition particle receptor subunit beta n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D7V6_SAPPC)

HSP 1 Score: 106 bits (264), Expect = 3.620e-23
Identity = 75/218 (34.40%), Postives = 115/218 (52.75%), Query Frame = 0
Query:  138 GGGGRTSKKRKGVVLFLGPCGSGKTAMCYRLSHGGGQAAASTVATVTSMEACRYPCSPPRCSSADTALLVDYPGHGRLRGGVGQELRGADRIVFMLDGSSL--AAQVAAGAELLYDVLTDPSLEGCR-GLMLALSKSD-LKEAKAPRAKMLLQKELDKLRGTRGMLGTQGEEDDMPSAVALGRPGQPFSLEIDSPCEVVAAGCSVVKEGGLESVLEFV 351
            GGG       + VVL +GPCG+GKTA+ +RL +G      + V TVTSM+       P       T  + D+PGH R+R    Q    A +I+F++D ++   A+ +   AE LYD+ T P +      +M+A SK+D +K A     + LL+ EL +L+ TR  L   G++D+   ++ LGR    F   ID+PC+V   G S+     L  +L+F+
Sbjct:   32 GGGAGLGGSGRDVVLLVGPCGAGKTALFHRLRNG-----PTKVETVTSMKE-TMETFPLFDEENATISICDFPGHERMRSTATQFYPIAKKIIFVVDATTANDASHIRKAAEFLYDIFTHPKINDAGVPVMIACSKTDDVKAATPATVQSLLETELTQLKSTRASLEAHGDDDE---SIPLGRDNALFEFAIDAPCDVTFEGYSIQTPDALNPLLDFI 240          
BLAST of mRNA_C-linearis_contig8.15626.1 vs. uniprot
Match: M4B3E5_HYAAE (Signal recognition particle receptor subunit beta n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B3E5_HYAAE)

HSP 1 Score: 97.8 bits (242), Expect = 6.880e-20
Identity = 74/213 (34.74%), Postives = 116/213 (54.46%), Query Frame = 0
Query:  143 TSKKRKGVVLFLGPCGSGKTAMCYRLSHGGGQAAASTVATVTSMEACRYPCSPPRCSSADTALLVDYPGHGRLRGGVGQELRGADRIVFMLDGSSLAAQVAAGAELLYDVLTDPSLEGCRG-LMLALSKSDLKEAKAPRA-KMLLQKELDKLRGTRGMLGTQGEEDDMP-SAVALGRPGQPFSLEIDSPCEVVAAGCSVVKEGGLESVLEFVR 352
            T KKRK + L LGP  +GKT+  + +  G      S++   T         +P +  +  T  +VDYPGH RLR  +      A  I F +D S + +   A AE LYDV  +  +      +M+  +KSD++EA +P+  +  L+KEL +L+ TR  L T+G+E+D   S V +GR G+ F  ++D+PCE+  A CSV K+  +  V+ F++
Sbjct:   53 TGKKRK-MALLLGPRHAGKTSFFHLVRDGEHAETVSSMKEQTGRFIVHGKYNPDKFDAELT--VVDYPGHERLRPRMADFYPVAGCIAFFVDASDVPSFRQA-AEFLYDVFANKKVNDLTPPIMVVCNKSDMREAVSPQVVRDALEKELTQLKKTRSSLETEGDEEDQDLSQVPVGRDGESFQFDVDAPCEISFAKCSV-KDAEIHDVVRFIQ 260          
BLAST of mRNA_C-linearis_contig8.15626.1 vs. uniprot
Match: A0A7S3JR42_9STRA (Signal recognition particle receptor subunit beta (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JR42_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.280e-19
Identity = 71/190 (37.37%), Postives = 96/190 (50.53%), Query Frame = 0
Query:  145 KKRKGVVLFLGPCGSGKTAMCYRLSHGGGQAAASTVATVTSMEACRYPCSPPRCSSADTALLVDYPGHGRLRGGVGQELRGADRIVFMLDGSSLAAQVAAGAELLYDVL-TDPSLEGCRGLMLALSKSDLKEAKAP-RAKMLLQKELDKLRGTRGMLGTQGEEDDMPSAVA-LGRPGQPFSLEIDSPCEV 331
            + R   +L +GPCGSGKT + YRL H        TV TV+SM+    P SP          LVD PGH RLRG +  EL  A  I+F+ D S    Q    AELLY +L T    +    L+   +KSD K  K   R K+++  E++ LR T   + +  +     S  A LG PGQ F+ +  SPC++
Sbjct:   28 RTRSASILIVGPCGSGKTLLFYRLVHD------ETVDTVSSMQPNESPASP----DGLPLRLVDLPGHYRLRGLLPDELECAQAIIFVFDASDALKQAKPAAELLYAILSTFADSKTGPDLLFICNKSDNKVVKTTQRVKLMMMNEIETLRKTENSIQSTADGASSSSEQAKLGIPGQFFNFDAHSPCKI 207          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15626.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJF4_ECTSI2.200e-13072.97Signal recognition particle receptor subunit beta ... [more]
A0A835YTM3_9STRA2.070e-3648.39Signal recognition particle receptor subunit beta ... [more]
A0A6G0XMT9_9STRA6.110e-3037.97Signal recognition particle receptor subunit beta ... [more]
A0A1V9ZHQ0_9STRA4.640e-2936.51Signal recognition particle receptor subunit beta ... [more]
A0A024TLZ7_9STRA1.760e-2737.02Signal recognition particle receptor subunit beta ... [more]
A0A485KDV8_9STRA1.810e-2737.87Signal recognition particle receptor subunit beta ... [more]
A0A7S2DSR0_9STRA1.910e-2635.78Signal recognition particle receptor subunit beta ... [more]
A0A067D7V6_SAPPC3.620e-2334.40Signal recognition particle receptor subunit beta ... [more]
M4B3E5_HYAAE6.880e-2034.74Signal recognition particle receptor subunit beta ... [more]
A0A7S3JR42_9STRA1.280e-1937.37Signal recognition particle receptor subunit beta ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019009Signal recognition particle receptor, beta subunitPFAMPF09439SRPRBcoord: 148..322
e-value: 3.8E-21
score: 75.3
IPR019009Signal recognition particle receptor, beta subunitPANTHERPTHR11485:SF34SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT BETAcoord: 112..345
NoneNo IPR availableGENE3D3.40.50.300coord: 142..353
e-value: 6.1E-37
score: 129.2
NoneNo IPR availablePANTHERPTHR11485TRANSFERRINcoord: 112..345
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 139..356
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 113..138
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 108..112
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 88..107
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..87
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..54
score: 0.63
NoneNo IPR availableTMHMMTMhelixcoord: 116..138
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 151..297

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:2006998..2008068 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15626.1mRNA_C-linearis_contig8.15626.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig8 2006956..2009492 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig8.15626.1 ID=prot_C-linearis_contig8.15626.1|Name=mRNA_C-linearis_contig8.15626.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=357bp
MCVTMVLEATTVQVAPMALNRVGGGGSGGRGAVAKNRATAWLLLLLCVAG
STGAEPNTDAGDVKPAGVVGVHVSGGVEQALASSKENAITALSLLDSLLA
SLGPFLAEHGLPSASIVLGGVAIAVLFLLFLSQVGIGGGGGRTSKKRKGV
VLFLGPCGSGKTAMCYRLSHGGGQAAASTVATVTSMEACRYPCSPPRCSS
ADTALLVDYPGHGRLRGGVGQELRGADRIVFMLDGSSLAAQVAAGAELLY
DVLTDPSLEGCRGLMLALSKSDLKEAKAPRAKMLLQKELDKLRGTRGMLG
TQGEEDDMPSAVALGRPGQPFSLEIDSPCEVVAAGCSVVKEGGLESVLEF
VRASLH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019009SRP_receptor_beta_su
IPR027417P-loop_NTPase