mRNA_C-linearis_contig8.15626.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15626.1
Unique NamemRNA_C-linearis_contig8.15626.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig8.15626.1 vs. uniprot
Match: D7FJF4_ECTSI (Signal recognition particle receptor subunit beta n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJF4_ECTSI)

HSP 1 Score: 385 bits (988), Expect = 2.480e-123
Identity = 216/296 (72.97%), Postives = 236/296 (79.73%), Query Frame = 1
Query:  259 VSGGVEQALASSKENAITALSLLDSLLASLGPFLAEHGLPSASIVLGGVAIAVLFLLFLSQVGIGGGGGRTSK-KRKGVVLFLGPCGSGKTAMCYRLSHGGGQAAASTVATVTSMEACRYPCSPPRCS------------SADTALLVDYPGHGRLRGGVGQELRGADRIVFMLDGSSLAAQVAAGAELLYDVLTDPSLEGCRGLMLALSKSDLKEAKAPRAKMLLQKELDKLRGTRGMLGTQGEEDDMPSAVALGRPGQPFSLEIDSPCEVVAAGCSVVKEGGLESVLEFVRASL 1107
            ++G V QALAS+ + A   LS L+SLLASL  FLAE+GLPSAS+V  GVAIA+  L+ L +VGI          KRKGVVLFLGPCGSGKTAMCYRLSHGG       V T TSMEACRYPCS  R S            SA +  LVDYPGH RLRGGVG+ELRGADR+VFMLDGS LAAQVAAGAELLYDVLTDPSLEGC+GLMLAL+KSDLKEAKA RAK LLQKELDKLRGTRGMLGTQGEEDDMP A+ALGRPGQPFSLE+DSPCEVV AGCSV KEGGL+SV++FVRASL
Sbjct:   66 IAGVVAQALASNSDKAAAVLSQLESLLASLESFLAEYGLPSASLVFPGVAIAIFLLVLLGKVGIXXXXXXXXXXKRKGVVLFLGPCGSGKTAMCYRLSHGG---ETGLVPTATSMEACRYPCSSGRLSELLARNGNGPSSSARSGSLVDYPGHERLRGGVGEELRGADRVVFMLDGSCLAAQVAAGAELLYDVLTDPSLEGCQGLMLALNKSDLKEAKASRAKTLLQKELDKLRGTRGMLGTQGEEDDMPVAMALGRPGQPFSLEVDSPCEVVVAGCSVAKEGGLDSVVDFVRASL 358          
BLAST of mRNA_C-linearis_contig8.15626.1 vs. uniprot
Match: A0A835YTM3_9STRA (Signal recognition particle receptor subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTM3_9STRA)

HSP 1 Score: 138 bits (348), Expect = 5.580e-34
Identity = 75/155 (48.39%), Postives = 101/155 (65.16%), Query Frame = 1
Query:  637 SSADTALLVDYPGHGRLRGGVGQELRGADRIVFMLDGSSLAAQVAAGAELLYDVLTDPSLEGCRGLMLALSKSDLKEAKAPRAKMLLQKELDKLRGTRGMLGTQGEEDD--MPSAVALGRPGQPFSLEIDSPCEVVAAGCSVVKEGGLESVLEFV 1095
            SS  +  + D+PGH RLRGG+  EL  +  ++FMLDG+ L++QV  G E+LYD+LTD S+E C+GL +  SK+DLK AK  R +  L KEL++LR TR  +G QGEED     S + LGR GQP  L +D PC +    CSV  EG L +V +F+
Sbjct:   20 SSKGSVTVTDFPGHERLRGGLRGELATSTAVIFMLDGTDLSSQVRLGGEMLYDILTDSSIERCKGLAIGCSKADLKVAKPDRVRAALTKELEQLRTTRWSIGMQGEEDTGRPNSFIPLGRQGQPLDLVVDCPCPLTVFTCSVKGEG-LNAVRDFI 173          
BLAST of mRNA_C-linearis_contig8.15626.1 vs. uniprot
Match: A0A6G0XMT9_9STRA (Signal recognition particle receptor subunit beta n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XMT9_9STRA)

HSP 1 Score: 123 bits (309), Expect = 5.600e-28
Identity = 90/237 (37.97%), Postives = 135/237 (56.96%), Query Frame = 1
Query:  403 VAIAVLFLL--FLSQVGIGGGGGRTSKKRKGVVLFLGPCGSGKTAMCYRLSHGGGQAAASTVATVTSMEACRYPCSPPRCSSADTALLVDYPGHGRLRGGVGQELRGADRIVFMLDGSSLA--AQVAAGAELLYDVLTDPSL-EGCRGLMLALSKSDLKEAKAP-RAKMLLQKELDKLRGTRGMLGTQGEEDDMPSAVALGRPGQPFSLEIDSPCEVVAAGCSVVKEGGLESVLEFV 1095
            VA  VL LL  F+ ++   G G R    ++ V+L LGPCGSGKTA+ +RL  G     A +V TVTSM+       P          ++D+PGH RLR    Q    A +IVF++D ++++   QV   AE L+D+ T P L +    +++A SK+D   A AP R ++LL+ EL +L+GTR  L TQ +++ +P    LGR   PF+ ++D+PCEVV    S+    G+  +L+F+
Sbjct:   16 VAGVVLLLLVAFIIKLAASGSGPRG---KRDVILLLGPCGSGKTALFHRLRDG-----AVSVETVTSMKE-TMETFPLHDEETANVSVLDFPGHERLRSQAPQFYPIAKKIVFIVDATTVSDPLQVRKAAEFLFDIFTHPKLNDNGIPVLIACSKADQATAAAPSRIQLLLEAELTQLKGTRASLDTQDDDESIP----LGRENVPFAFDVDAPCEVVFESYSIHTPNGVAPLLDFI 239          
BLAST of mRNA_C-linearis_contig8.15626.1 vs. uniprot
Match: A0A1V9ZHQ0_9STRA (Signal recognition particle receptor subunit beta n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZHQ0_9STRA)

HSP 1 Score: 120 bits (302), Expect = 4.930e-27
Identity = 88/239 (36.82%), Postives = 129/239 (53.97%), Query Frame = 1
Query:  397 GGVAIAVLFLLFLSQVGIGGGGGRTSKKRKGVVLFLGPCGSGKTAMCYRLSHGGGQAAASTVATVTSMEAC--RYPCSPPRCSSADTALLVDYPGHGRLRGGVGQELRGADRIVFMLDGSSL--AAQVAAGAELLYDVLTDPSLEGCR-GLMLALSKSD-LKEAKAPRAKMLLQKELDKLRGTRGMLGTQGEEDDMPSAVALGRPGQPFSLEIDSPCEVVAAGCSVVKEGGLESVLEFV 1095
            G  A A L L F+      GG G  S KR  +VL +GPCG+GKTA+ +RL  G      + V TVTSM+    ++P      +   T  + D+PGH R+R   GQ    A +I+F++D ++   A  +   AE LYD+ T P +      +M+A SKSD  K A +   + LL+ EL +L+ TR  L   GE+D+   ++ LGR   PF+ +ID+PCEV     S+V    L  +L+F+
Sbjct:   14 GAAAGAALVLFFVLLKLCSGGSGIRSSKRD-IVLLVGPCGAGKTALFHRLRDG-----PTKVTTVTSMKETMEKFPLFDEENA---TFNICDFPGHERMRSQAGQFYPIAKKIIFVVDSTTANDAGHIRKAAEFLYDIFTHPKVNDAGVPVMIACSKSDETKAATSATVRSLLESELTQLKSTRASLEAHGEDDE---SIPLGRDNAPFAFDIDAPCEVTFENYSIVTPEALNPLLDFI 240          
BLAST of mRNA_C-linearis_contig8.15626.1 vs. uniprot
Match: A0A024TLZ7_9STRA (Signal recognition particle receptor subunit beta n=7 Tax=Aphanomyces TaxID=100860 RepID=A0A024TLZ7_9STRA)

HSP 1 Score: 117 bits (292), Expect = 1.030e-25
Identity = 87/235 (37.02%), Postives = 127/235 (54.04%), Query Frame = 1
Query:  403 VAIAVLFLLFLSQVGIGGGGGRTSKKRKGVVLFLGPCGSGKTAMCYRLSHGGGQAAASTVATVTSMEACRYPCSPPRCSSADTALLVDYPGHGRLRGGVGQELRGADRIVFMLDGSSL--AAQVAAGAELLYDVLTDPSL-EGCRGLMLALSKSDLKEAKAP-RAKMLLQKELDKLRGTRGMLGTQGEEDDMPSAVALGRPGQPFSLEIDSPCEVVAAGCSVVKEGGLESVLEFV 1095
            VA AVL LL    + +   G     KR  V+L LGPCG GKTA+ +RL  G      S V TVTSM+       P     A T  ++D+PGH RLR  V Q    A ++VF++D +++  AAQV   AE LYD+   P + +    L++A SK+D+  A  P   + LL+ EL +L+ TR  L    +++ +P    LGR   PF+ ++D+PCEVV    S+     +  +L+F+
Sbjct:   16 VAGAVLVLLLAFIIKLAASGSSPGGKRD-VILLLGPCGGGKTALFHRLRDG-----PSKVDTVTSMKE-TLETFPLFDEEAATVSVLDFPGHERLRSQVSQFYPIAKKLVFVVDATTVGDAAQVRKAAEFLYDIFVHPKVHDNGIPLLVACSKADVATAATPSHIQSLLETELSQLKSTRASLEAHDDDESIP----LGRENVPFAFDVDAPCEVVFESYSIHSAEAIAPLLDFI 239          
BLAST of mRNA_C-linearis_contig8.15626.1 vs. uniprot
Match: A0A485KDV8_9STRA (Signal recognition particle receptor subunit beta n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KDV8_9STRA)

HSP 1 Score: 117 bits (292), Expect = 1.060e-25
Identity = 89/235 (37.87%), Postives = 131/235 (55.74%), Query Frame = 1
Query:  403 VAIAVLFLLFLSQVGIGGGGGRTSKKRKGVVLFLGPCGSGKTAMCYRLSHGGGQAAASTVATVTSMEACRYPCSPPRCSSADTALLVDYPGHGRLRGGVGQELRGADRIVFMLDGSSLA--AQVAAGAELLYDVLTDPSLEGCR-GLMLALSKSDLKEAKAP-RAKMLLQKELDKLRGTRGMLGTQGEEDDMPSAVALGRPGQPFSLEIDSPCEVVAAGCSVVKEGGLESVLEFV 1095
            VA AVL LL    + +   G     KR  V+L +GPCG GKTA+ +RL  G     + T+ TVTSM+            SA+ ++L D+PGH RLR  V Q    A ++VF++D ++++  AQV   AE L+DV T P L      +++A SKSDL  A AP R + LL+ EL +L+ TR  L    +++ +P    LGR   PF+ ++D+PCEVV    S+     +  +L+F+
Sbjct:   16 VAGAVLLLLVAFIIKMAASGSGPGGKRD-VILLVGPCGGGKTALFHRLRDG----PSPTLETVTSMKETLESFPLFDEDSANVSVL-DFPGHERLRSQVSQFYPIAKKLVFVVDSTTVSDPAQVRKAAEFLFDVFTHPKLNDTAIPVLIACSKSDLTTAAAPGRIQSLLEAELTQLKSTRASLEAHDDDESIP----LGRDNVPFAFDVDAPCEVVFETYSIHSAEAIAPLLDFI 240          
BLAST of mRNA_C-linearis_contig8.15626.1 vs. uniprot
Match: A0A7S2DSR0_9STRA (Signal recognition particle receptor subunit beta n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DSR0_9STRA)

HSP 1 Score: 112 bits (281), Expect = 1.150e-24
Identity = 73/204 (35.78%), Postives = 115/204 (56.37%), Query Frame = 1
Query:  493 VLFLGPCGSGKTAMCYRLSHGGGQAAASTVATVTSMEACRYPCSPPRCSSADTALLVDYPGHGRLRGGVGQELRGADRIVFMLDGSSLAAQVAAGAELLYDVLTDPSLEGCRGLMLALSKSDLKEAK-APRAKMLLQKELDKLRGTRGMLGTQGEEDDMPSAVALGRPGQPFSLEIDSPCEVVAAGCSVVKEGGLESVLEFVRA 1101
            VL +GPCG+GKT +  +L +GG         TVTSM      C+     +     ++D+PGH R R  +  +L GA  +V ++D S+ + QV   ++LL+ VLT P L     +++  +K D++ +K A R K+LLQKEL+ +R TRG +  +GE+    S + LG+ G+PF  + D P    A+G ++  EGGL  +  F+ A
Sbjct:    7 VLLIGPCGAGKTVIFQQLCYGG------VAETVTSMSPAHSECTMGSKDAPKKINVIDFPGHMRQRPALLGQLSGAKGVVVVVDSSN-SKQVKEASDLLFSVLTAPLLPHSTSVLVFCNKMDVEGSKSADRVKVLLQKELETMRNTRGSMSQEGEDGSKGSRM-LGQEGRPFRFDHDMPNITFASGTALAGEGGLSELTTFLTA 202          
BLAST of mRNA_C-linearis_contig8.15626.1 vs. uniprot
Match: A0A067D7V6_SAPPC (Signal recognition particle receptor subunit beta n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D7V6_SAPPC)

HSP 1 Score: 105 bits (262), Expect = 1.030e-21
Identity = 75/218 (34.40%), Postives = 115/218 (52.75%), Query Frame = 1
Query:  454 GGGGRTSKKRKGVVLFLGPCGSGKTAMCYRLSHGGGQAAASTVATVTSMEACRYPCSPPRCSSADTALLVDYPGHGRLRGGVGQELRGADRIVFMLDGSSL--AAQVAAGAELLYDVLTDPSLEGCR-GLMLALSKSD-LKEAKAPRAKMLLQKELDKLRGTRGMLGTQGEEDDMPSAVALGRPGQPFSLEIDSPCEVVAAGCSVVKEGGLESVLEFV 1095
            GGG       + VVL +GPCG+GKTA+ +RL +G      + V TVTSM+       P       T  + D+PGH R+R    Q    A +I+F++D ++   A+ +   AE LYD+ T P +      +M+A SK+D +K A     + LL+ EL +L+ TR  L   G++D+   ++ LGR    F   ID+PC+V   G S+     L  +L+F+
Sbjct:   32 GGGAGLGGSGRDVVLLVGPCGAGKTALFHRLRNG-----PTKVETVTSMKE-TMETFPLFDEENATISICDFPGHERMRSTATQFYPIAKKIIFVVDATTANDASHIRKAAEFLYDIFTHPKINDAGVPVMIACSKTDDVKAATPATVQSLLETELTQLKSTRASLEAHGDDDE---SIPLGRDNALFEFAIDAPCDVTFEGYSIQTPDALNPLLDFI 240          
BLAST of mRNA_C-linearis_contig8.15626.1 vs. uniprot
Match: A0A7S3JR42_9STRA (Signal recognition particle receptor subunit beta (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JR42_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.100e-18
Identity = 71/190 (37.37%), Postives = 96/190 (50.53%), Query Frame = 1
Query:  475 KKRKGVVLFLGPCGSGKTAMCYRLSHGGGQAAASTVATVTSMEACRYPCSPPRCSSADTALLVDYPGHGRLRGGVGQELRGADRIVFMLDGSSLAAQVAAGAELLYDVL-TDPSLEGCRGLMLALSKSDLKEAKAP-RAKMLLQKELDKLRGTRGMLGTQGEEDDMPSAVA-LGRPGQPFSLEIDSPCEV 1035
            + R   +L +GPCGSGKT + YRL H        TV TV+SM+    P SP          LVD PGH RLRG +  EL  A  I+F+ D S    Q    AELLY +L T    +    L+   +KSD K  K   R K+++  E++ LR T   + +  +     S  A LG PGQ F+ +  SPC++
Sbjct:   28 RTRSASILIVGPCGSGKTLLFYRLVHD------ETVDTVSSMQPNESPASP----DGLPLRLVDLPGHYRLRGLLPDELECAQAIIFVFDASDALKQAKPAAELLYAILSTFADSKTGPDLLFICNKSDNKVVKTTQRVKLMMMNEIETLRKTENSIQSTADGASSSSEQAKLGIPGQFFNFDAHSPCKI 207          
BLAST of mRNA_C-linearis_contig8.15626.1 vs. uniprot
Match: M4B3E5_HYAAE (Signal recognition particle receptor subunit beta n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B3E5_HYAAE)

HSP 1 Score: 96.7 bits (239), Expect = 1.730e-18
Identity = 74/213 (34.74%), Postives = 116/213 (54.46%), Query Frame = 1
Query:  469 TSKKRKGVVLFLGPCGSGKTAMCYRLSHGGGQAAASTVATVTSMEACRYPCSPPRCSSADTALLVDYPGHGRLRGGVGQELRGADRIVFMLDGSSLAAQVAAGAELLYDVLTDPSLEGCRG-LMLALSKSDLKEAKAPRA-KMLLQKELDKLRGTRGMLGTQGEEDDMP-SAVALGRPGQPFSLEIDSPCEVVAAGCSVVKEGGLESVLEFVR 1098
            T KKRK + L LGP  +GKT+  + +  G      S++   T         +P +  +  T  +VDYPGH RLR  +      A  I F +D S + +   A AE LYDV  +  +      +M+  +KSD++EA +P+  +  L+KEL +L+ TR  L T+G+E+D   S V +GR G+ F  ++D+PCE+  A CSV K+  +  V+ F++
Sbjct:   53 TGKKRK-MALLLGPRHAGKTSFFHLVRDGEHAETVSSMKEQTGRFIVHGKYNPDKFDAELT--VVDYPGHERLRPRMADFYPVAGCIAFFVDASDVPSFRQA-AEFLYDVFANKKVNDLTPPIMVVCNKSDMREAVSPQVVRDALEKELTQLKKTRSSLETEGDEEDQDLSQVPVGRDGESFQFDVDAPCEISFAKCSV-KDAEIHDVVRFIQ 260          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15626.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJF4_ECTSI2.480e-12372.97Signal recognition particle receptor subunit beta ... [more]
A0A835YTM3_9STRA5.580e-3448.39Signal recognition particle receptor subunit beta ... [more]
A0A6G0XMT9_9STRA5.600e-2837.97Signal recognition particle receptor subunit beta ... [more]
A0A1V9ZHQ0_9STRA4.930e-2736.82Signal recognition particle receptor subunit beta ... [more]
A0A024TLZ7_9STRA1.030e-2537.02Signal recognition particle receptor subunit beta ... [more]
A0A485KDV8_9STRA1.060e-2537.87Signal recognition particle receptor subunit beta ... [more]
A0A7S2DSR0_9STRA1.150e-2435.78Signal recognition particle receptor subunit beta ... [more]
A0A067D7V6_SAPPC1.030e-2134.40Signal recognition particle receptor subunit beta ... [more]
A0A7S3JR42_9STRA1.100e-1837.37Signal recognition particle receptor subunit beta ... [more]
M4B3E5_HYAAE1.730e-1834.74Signal recognition particle receptor subunit beta ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:2006956..2009492 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score392.1
Seed ortholog evalue2.7e-106
Seed eggNOG ortholog2880.D7FJF4
Preferred nameSRPRB
KEGG koko:K12272,ko:K13343,ko:K14736
KEGG TC3.A.20.1,3.A.5.8
KEGG Pathwayko03060,ko04066,ko04146,ko04216,ko04978,map03060,map04066,map04146,map04216,map04978
Hectar predicted targeting categoryother localisation
GOsGO:0000041,GO:0000166,GO:0001666,GO:0001882,GO:0001883,GO:0002164,GO:0002165,GO:0002168,GO:0002526,GO:0003002,GO:0003674,GO:0003824,GO:0003924,GO:0005047,GO:0005488,GO:0005506,GO:0005515,GO:0005525,GO:0005575,GO:0005576,GO:0005604,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005785,GO:0005789,GO:0005791,GO:0005856,GO:0005874,GO:0005881,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006810,GO:0006811,GO:0006812,GO:0006826,GO:0006873,GO:0006875,GO:0006879,GO:0006886,GO:0006915,GO:0006950,GO:0006952,GO:0006953,GO:0006954,GO:0006986,GO:0007154,GO:0007165,GO:0007275,GO:0007389,GO:0007399,GO:0007591,GO:0008104,GO:0008150,GO:0008199,GO:0008219,GO:0008284,GO:0008363,GO:0009628,GO:0009719,GO:0009725,GO:0009791,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010243,GO:0010288,GO:0010720,GO:0012501,GO:0012505,GO:0014013,GO:0014015,GO:0014070,GO:0014074,GO:0015031,GO:0015630,GO:0015682,GO:0015833,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019725,GO:0019899,GO:0022008,GO:0023052,GO:0030001,GO:0030003,GO:0030154,GO:0030176,GO:0030867,GO:0030968,GO:0031012,GO:0031090,GO:0031224,GO:0031227,GO:0031625,GO:0031641,GO:0031643,GO:0031644,GO:0031646,GO:0031984,GO:0032354,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032870,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034613,GO:0034620,GO:0034698,GO:0034976,GO:0035017,GO:0035293,GO:0035639,GO:0035966,GO:0035967,GO:0036094,GO:0036293,GO:0036498,GO:0040003,GO:0042127,GO:0042175,GO:0042221,GO:0042303,GO:0042335,GO:0042337,GO:0042592,GO:0042886,GO:0043021,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044057,GO:0044389,GO:0044421,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045047,GO:0045184,GO:0045595,GO:0045597,GO:0046683,GO:0046872,GO:0046907,GO:0046914,GO:0046916,GO:0048518,GO:0048522,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0048878,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0050801,GO:0050896,GO:0051094,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051286,GO:0051591,GO:0051641,GO:0051649,GO:0051716,GO:0051960,GO:0051962,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0060284,GO:0062023,GO:0065007,GO:0065008,GO:0070445,GO:0070447,GO:0070482,GO:0070727,GO:0070887,GO:0070972,GO:0071310,GO:0071320,GO:0071371,GO:0071372,GO:0071407,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0072512,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0097159,GO:0097367,GO:0098588,GO:0098771,GO:0098796,GO:0098827,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:1901265,GO:1901363,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:2000026,GO:2000177,GO:2000179
EggNOG free text desc.signal recognition particle binding
EggNOG OGsCOG2229@1,KOG0090@2759
Ec32 ortholog descriptionSRPRB, beta subunit of the signal recognition particle receptor
Ec32 orthologEc-14_006140.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02044,ko04031,ko04131,ko04147
Exons1
Model size2537
Cds size1071
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15626.1prot_C-linearis_contig8.15626.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 2006998..2008068 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930539.8742313-UTR-C-linearis_contig8:2006955..20069971622930539.8742313-UTR-C-linearis_contig8:2006955..2006997Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2006956..2006997 +
1690881122.0149481-UTR-C-linearis_contig8:2006955..20069971690881122.0149481-UTR-C-linearis_contig8:2006955..2006997Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2006956..2006997 +
1622930539.9190192-UTR-C-linearis_contig8:2008068..20094921622930539.9190192-UTR-C-linearis_contig8:2008068..2009492Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2008069..2009492 +
1690881122.0392838-UTR-C-linearis_contig8:2008068..20094921690881122.0392838-UTR-C-linearis_contig8:2008068..2009492Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2008069..2009492 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930539.8967347-CDS-C-linearis_contig8:2006997..20080681622930539.8967347-CDS-C-linearis_contig8:2006997..2008068Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2006998..2008068 +
1690881122.028379-CDS-C-linearis_contig8:2006997..20080681690881122.028379-CDS-C-linearis_contig8:2006997..2008068Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2006998..2008068 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15626.1

>prot_C-linearis_contig8.15626.1 ID=prot_C-linearis_contig8.15626.1|Name=mRNA_C-linearis_contig8.15626.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=357bp
MCVTMVLEATTVQVAPMALNRVGGGGSGGRGAVAKNRATAWLLLLLCVAG
STGAEPNTDAGDVKPAGVVGVHVSGGVEQALASSKENAITALSLLDSLLA
SLGPFLAEHGLPSASIVLGGVAIAVLFLLFLSQVGIGGGGGRTSKKRKGV
VLFLGPCGSGKTAMCYRLSHGGGQAAASTVATVTSMEACRYPCSPPRCSS
ADTALLVDYPGHGRLRGGVGQELRGADRIVFMLDGSSLAAQVAAGAELLY
DVLTDPSLEGCRGLMLALSKSDLKEAKAPRAKMLLQKELDKLRGTRGMLG
TQGEEDDMPSAVALGRPGQPFSLEIDSPCEVVAAGCSVVKEGGLESVLEF
VRASLH*
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mRNA from alignment at C-linearis_contig8:2006956..2009492+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15626.1 ID=mRNA_C-linearis_contig8.15626.1|Name=mRNA_C-linearis_contig8.15626.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2537bp|location=Sequence derived from alignment at C-linearis_contig8:2006956..2009492+ (Chordaria linearis ClinC8C monoicous)
GGTTGTCGTGTGCTTCTGCACTGCTGGCTGTTCGAAGCTGTGATGTGTGT GACTATGGTGCTCGAGGCGACGACGGTGCAAGTCGCTCCGATGGCCTTGA ATCGTGTCGGTGGTGGTGGCAGCGGCGGTAGAGGTGCTGTTGCCAAGAAC AGGGCAACGGCTTGGCTGCTGCTTCTCCTGTGCGTCGCGGGTTCGACGGG TGCAGAACCGAACACGGACGCCGGCGATGTCAAGCCTGCTGGCGTGGTGG GAGTACATGTGTCTGGTGGCGTGGAGCAGGCGCTTGCCTCGAGCAAGGAG AACGCCATCACCGCCCTATCGCTGCTCGATTCGCTCCTGGCGTCCCTGGG CCCTTTCCTAGCAGAACACGGCCTACCGTCGGCCTCCATCGTGTTGGGAG GGGTTGCTATCGCGGTTCTCTTCCTTCTGTTCCTGAGCCAAGTCGGCATC GGCGGTGGCGGTGGCAGGACATCGAAGAAGCGAAAGGGGGTGGTGCTGTT TCTTGGCCCCTGCGGCTCCGGCAAGACGGCCATGTGCTATCGGCTCTCTC ACGGCGGCGGTCAAGCCGCGGCATCGACGGTGGCAACCGTAACCTCGATG GAGGCCTGCAGGTACCCGTGCAGCCCTCCGAGATGCTCCTCGGCTGACAC CGCCTTGTTAGTGGACTACCCGGGCCACGGGAGACTTCGAGGAGGGGTGG GCCAAGAGCTGCGCGGGGCTGATCGCATCGTCTTCATGCTCGACGGCTCT AGCCTCGCGGCCCAGGTGGCGGCAGGCGCGGAGCTCCTGTACGACGTGCT CACCGACCCCTCGCTCGAGGGCTGCCGAGGGCTGATGCTCGCGCTCAGCA AGAGCGACCTCAAGGAGGCCAAGGCGCCCCGGGCCAAGATGCTGCTGCAG AAGGAGCTGGACAAGCTGAGGGGTACCCGCGGGATGCTGGGTACGCAGGG GGAGGAGGACGACATGCCGTCGGCGGTGGCGCTGGGGCGGCCGGGGCAGC CCTTCAGCTTGGAGATTGACTCGCCCTGCGAAGTGGTGGCTGCGGGGTGC TCTGTGGTGAAGGAAGGCGGCCTGGAATCGGTGCTTGAGTTCGTACGCGC TTCGCTTCACTAGGTTCAGTTTTTGCCGAGTCGTGTTTCTTGGGTCGTGC GTGTGCTCGTGAGTGTGGTGATGGGGTCGGCGTTGGGTTGCAAGTGAACG TTTCTATTGCTTTCTCGCCACGCCGTTGTGTACGGGGGGTAATACCAGAT CATTGGGTCGTTTGCAAGTGACTTCGGGCGTGGTGACTTCCTGTGCTTGG CCCTGCACAGGCTGTAGTATCTGGTATGCTGTGGGGGCTGGTAGATTATG TTCTTCAACGTCCCCCTCTCTGGGCTAGCGTCAAGAACTGCCGTAACTGC TGTGCAAAGTAGCAAAACGTATAAAGGTTGTTTTGCTTCTTGTGCATGCA TTCAAGCTTATGAGACCGGGCGGACCCTGAACCCGGAGGGGGCACCAATG ATATGTTCGTCCATTTAAAGGGAAAGCACGGAAGGTGACTCATGCAGCGA AGCTGAGAAGCACGAAAGCTGGGAAACGTTTCCTGTTTTTGAGCTGACCT GTCTTCGCATCAGTTTCCTGGCGCTACCCCTTTTCGTTGGAGCAAAGGGA TATTATTGGTGCTCTTTCCGGTTAACGGTCCGCCTCGTGGCCTTTTCCCT TTGCGGACAGCAGTTTCTGGAGCCGCCGCGGCAGATTGATGCCACAAGGA AGCTGTACACAAGATATCGTCCGGTTTTTTCGCGTTGTCCGTGAGTCTGG CCGGGCTACAAAGTAGGTACATGTGAAAGCACGCCGTCGCTTTCCGATCG ACGTCCTGTATGGCACGCGGAGCTTGTGCATCTCGTGAGAAGTGGTAATG TGGTGTGGAATTACCAAGGCTTTCGTAAGCTTTACGTTCGGGCGCGATAT CCACAGCATTTATATCTCGCCGTTTCGAGTTTTTTGCAGTTCAGATTTAA GGCCTAAAACTCGCCAGAATCCGTACATAGAGAAATCGACGACCGCCCGA TTGAGCCAGGGGACTTGTGTGTACATGAGACACGGTCTCGTGCAAAAAGC TGGGAATGACTTACGGTGCTTGTGAAATGACGTACCGAGGTCATTGCAGC AAGTGCGATCAAAGCAACATATTTCGCACCCATTGGTTCAGCCAGCGATA TTCTCCGCTGGTCCAACATCAAACAAACATGAAGGACACCGGGAATGTAC ATTCGTTTGTTGCAGTGTTCGGTCGACAGCCAGGTAGCCAATTTCGATGG CAGAGGTAGCTGGCACCCAAGGGTAAACCGGCCGCGATGAACTACAAACC GTGCGACACCTGCGTCGAACTTGTGACCTTCTACGATTCGACGTTTTTCT CCGGAGCCACCAGTCTTCTTGCCCGGTAACTCCCTTGTGTAAAAAATCGC CTGTTGCCTGCGTAGCGAGTTACGGATATACTTCCTCTGTCCCATAAGTC TGGGCTGTTATGAATGCGCAGTCGTTAGGGTACTTAC
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Coding sequence (CDS) from alignment at C-linearis_contig8:2006956..2009492+

>mRNA_C-linearis_contig8.15626.1 ID=mRNA_C-linearis_contig8.15626.1|Name=mRNA_C-linearis_contig8.15626.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2142bp|location=Sequence derived from alignment at C-linearis_contig8:2006956..2009492+ (Chordaria linearis ClinC8C monoicous)
ATGTGTGTGACTATGGTGCTCGAGGCGACGACGGTGCAAGTCGCTCCGAT
GGCCTTGAATCGTGTCGGTGGTGGTGGCAGCGGCGGTAGAGGTGCTGTTG
CCAAGAACAGGGCAACGGCTTGGCTGCTGCTTCTCCTGTGCGTCGCGGGT
TCGACGGGTGCAGAACCGAACACGGACGCCGGCGATGTCAAGCCTGCTGG
CGTGGTGGGAGTACATGTGTCTGGTGGCGTGGAGCAGGCGCTTGCCTCGA
GCAAGGAGAACGCCATCACCGCCCTATCGCTGCTCGATTCGCTCCTGGCG
TCCCTGGGCCCTTTCCTAGCAGAACACGGCCTACCGTCGGCCTCCATCGT
GTTGGGAGGGGTTGCTATCGCGGTTCTCTTCCTTCTGTTCCTGAGCCAAG
TCGGCATCGGCGGTGGCGGTGGCAGGACATCGAAGAAGCGAAAGGGGGTG
GTGCTGTTTCTTGGCCCCTGCGGCTCCGGCAAGACGGCCATGTGCTATCG
GCTCTCTCACGGCGGCGGTCAAGCCGCGGCATCGACGGTGGCAACCGTAA
CCTCGATGGAGGCCTGCAGGTACCCGTGCAGCCCTCCGAGATGCTCCTCG
GCTGACACCGCCTTGTTAGTGGACTACCCGGGCCACGGGAGACTTCGAGG
AGGGGTGGGCCAAGAGCTGCGCGGGGCTGATCGCATCGTCTTCATGCTCG
ACGGCTCTAGCCTCGCGGCCCAGGTGGCGGCAGGCGCGGAGCTCCTGTAC
GACGTGCTCACCGACCCCTCGCTCGAGGGCTGCCGAGGGCTGATGCTCGC
GCTCAGCAAGAGCGACCTCAAGGAGGCCAAGGCGCCCCGGGCCAAGATGC
TGCTGCAGAAGGAGCTGGACAAGCTGAGGGGTACCCGCGGGATGCTGGGT
ACGCAGGGGGAGGAGGACGACATGCCGTCGGCGGTGGCGCTGGGGCGGCC
GGGGCAGCCCTTCAGCTTGGAGATTGACTCGCCCTGCGAAGTGGTGGCTG
CGGGGTGCTCTGTGGTGAAGGAAGGCGGCCTGGAATCGGTGCTTGAGTTC
GTACGCGCTTCGCTTCACTAGATGTGTGTGACTATGGTGCTCGAGGCGAC
GACGGTGCAAGTCGCTCCGATGGCCTTGAATCGTGTCGGTGGTGGTGGCA
GCGGCGGTAGAGGTGCTGTTGCCAAGAACAGGGCAACGGCTTGGCTGCTG
CTTCTCCTGTGCGTCGCGGGTTCGACGGGTGCAGAACCGAACACGGACGC
CGGCGATGTCAAGCCTGCTGGCGTGGTGGGAGTACATGTGTCTGGTGGCG
TGGAGCAGGCGCTTGCCTCGAGCAAGGAGAACGCCATCACCGCCCTATCG
CTGCTCGATTCGCTCCTGGCGTCCCTGGGCCCTTTCCTAGCAGAACACGG
CCTACCGTCGGCCTCCATCGTGTTGGGAGGGGTTGCTATCGCGGTTCTCT
TCCTTCTGTTCCTGAGCCAAGTCGGCATCGGCGGTGGCGGTGGCAGGACA
TCGAAGAAGCGAAAGGGGGTGGTGCTGTTTCTTGGCCCCTGCGGCTCCGG
CAAGACGGCCATGTGCTATCGGCTCTCTCACGGCGGCGGTCAAGCCGCGG
CATCGACGGTGGCAACCGTAACCTCGATGGAGGCCTGCAGGTACCCGTGC
AGCCCTCCGAGATGCTCCTCGGCTGACACCGCCTTGTTAGTGGACTACCC
GGGCCACGGGAGACTTCGAGGAGGGGTGGGCCAAGAGCTGCGCGGGGCTG
ATCGCATCGTCTTCATGCTCGACGGCTCTAGCCTCGCGGCCCAGGTGGCG
GCAGGCGCGGAGCTCCTGTACGACGTGCTCACCGACCCCTCGCTCGAGGG
CTGCCGAGGGCTGATGCTCGCGCTCAGCAAGAGCGACCTCAAGGAGGCCA
AGGCGCCCCGGGCCAAGATGCTGCTGCAGAAGGAGCTGGACAAGCTGAGG
GGTACCCGCGGGATGCTGGGTACGCAGGGGGAGGAGGACGACATGCCGTC
GGCGGTGGCGCTGGGGCGGCCGGGGCAGCCCTTCAGCTTGGAGATTGACT
CGCCCTGCGAAGTGGTGGCTGCGGGGTGCTCTGTGGTGAAGGAAGGCGGC
CTGGAATCGGTGCTTGAGTTCGTACGCGCTTCGCTTCACTAG
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