mRNA_C-linearis_contig8.15626.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig8.15626.1 vs. uniprot
Match: D7FJF4_ECTSI (Signal recognition particle receptor subunit beta n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJF4_ECTSI) HSP 1 Score: 385 bits (988), Expect = 2.480e-123 Identity = 216/296 (72.97%), Postives = 236/296 (79.73%), Query Frame = 1
Query: 259 VSGGVEQALASSKENAITALSLLDSLLASLGPFLAEHGLPSASIVLGGVAIAVLFLLFLSQVGIGGGGGRTSK-KRKGVVLFLGPCGSGKTAMCYRLSHGGGQAAASTVATVTSMEACRYPCSPPRCS------------SADTALLVDYPGHGRLRGGVGQELRGADRIVFMLDGSSLAAQVAAGAELLYDVLTDPSLEGCRGLMLALSKSDLKEAKAPRAKMLLQKELDKLRGTRGMLGTQGEEDDMPSAVALGRPGQPFSLEIDSPCEVVAAGCSVVKEGGLESVLEFVRASL 1107
++G V QALAS+ + A LS L+SLLASL FLAE+GLPSAS+V GVAIA+ L+ L +VGI KRKGVVLFLGPCGSGKTAMCYRLSHGG V T TSMEACRYPCS R S SA + LVDYPGH RLRGGVG+ELRGADR+VFMLDGS LAAQVAAGAELLYDVLTDPSLEGC+GLMLAL+KSDLKEAKA RAK LLQKELDKLRGTRGMLGTQGEEDDMP A+ALGRPGQPFSLE+DSPCEVV AGCSV KEGGL+SV++FVRASL
Sbjct: 66 IAGVVAQALASNSDKAAAVLSQLESLLASLESFLAEYGLPSASLVFPGVAIAIFLLVLLGKVGIXXXXXXXXXXKRKGVVLFLGPCGSGKTAMCYRLSHGG---ETGLVPTATSMEACRYPCSSGRLSELLARNGNGPSSSARSGSLVDYPGHERLRGGVGEELRGADRVVFMLDGSCLAAQVAAGAELLYDVLTDPSLEGCQGLMLALNKSDLKEAKASRAKTLLQKELDKLRGTRGMLGTQGEEDDMPVAMALGRPGQPFSLEVDSPCEVVVAGCSVAKEGGLDSVVDFVRASL 358
BLAST of mRNA_C-linearis_contig8.15626.1 vs. uniprot
Match: A0A835YTM3_9STRA (Signal recognition particle receptor subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTM3_9STRA) HSP 1 Score: 138 bits (348), Expect = 5.580e-34 Identity = 75/155 (48.39%), Postives = 101/155 (65.16%), Query Frame = 1
Query: 637 SSADTALLVDYPGHGRLRGGVGQELRGADRIVFMLDGSSLAAQVAAGAELLYDVLTDPSLEGCRGLMLALSKSDLKEAKAPRAKMLLQKELDKLRGTRGMLGTQGEEDD--MPSAVALGRPGQPFSLEIDSPCEVVAAGCSVVKEGGLESVLEFV 1095
SS + + D+PGH RLRGG+ EL + ++FMLDG+ L++QV G E+LYD+LTD S+E C+GL + SK+DLK AK R + L KEL++LR TR +G QGEED S + LGR GQP L +D PC + CSV EG L +V +F+
Sbjct: 20 SSKGSVTVTDFPGHERLRGGLRGELATSTAVIFMLDGTDLSSQVRLGGEMLYDILTDSSIERCKGLAIGCSKADLKVAKPDRVRAALTKELEQLRTTRWSIGMQGEEDTGRPNSFIPLGRQGQPLDLVVDCPCPLTVFTCSVKGEG-LNAVRDFI 173
BLAST of mRNA_C-linearis_contig8.15626.1 vs. uniprot
Match: A0A6G0XMT9_9STRA (Signal recognition particle receptor subunit beta n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XMT9_9STRA) HSP 1 Score: 123 bits (309), Expect = 5.600e-28 Identity = 90/237 (37.97%), Postives = 135/237 (56.96%), Query Frame = 1
Query: 403 VAIAVLFLL--FLSQVGIGGGGGRTSKKRKGVVLFLGPCGSGKTAMCYRLSHGGGQAAASTVATVTSMEACRYPCSPPRCSSADTALLVDYPGHGRLRGGVGQELRGADRIVFMLDGSSLA--AQVAAGAELLYDVLTDPSL-EGCRGLMLALSKSDLKEAKAP-RAKMLLQKELDKLRGTRGMLGTQGEEDDMPSAVALGRPGQPFSLEIDSPCEVVAAGCSVVKEGGLESVLEFV 1095
VA VL LL F+ ++ G G R ++ V+L LGPCGSGKTA+ +RL G A +V TVTSM+ P ++D+PGH RLR Q A +IVF++D ++++ QV AE L+D+ T P L + +++A SK+D A AP R ++LL+ EL +L+GTR L TQ +++ +P LGR PF+ ++D+PCEVV S+ G+ +L+F+
Sbjct: 16 VAGVVLLLLVAFIIKLAASGSGPRG---KRDVILLLGPCGSGKTALFHRLRDG-----AVSVETVTSMKE-TMETFPLHDEETANVSVLDFPGHERLRSQAPQFYPIAKKIVFIVDATTVSDPLQVRKAAEFLFDIFTHPKLNDNGIPVLIACSKADQATAAAPSRIQLLLEAELTQLKGTRASLDTQDDDESIP----LGRENVPFAFDVDAPCEVVFESYSIHTPNGVAPLLDFI 239
BLAST of mRNA_C-linearis_contig8.15626.1 vs. uniprot
Match: A0A1V9ZHQ0_9STRA (Signal recognition particle receptor subunit beta n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZHQ0_9STRA) HSP 1 Score: 120 bits (302), Expect = 4.930e-27 Identity = 88/239 (36.82%), Postives = 129/239 (53.97%), Query Frame = 1
Query: 397 GGVAIAVLFLLFLSQVGIGGGGGRTSKKRKGVVLFLGPCGSGKTAMCYRLSHGGGQAAASTVATVTSMEAC--RYPCSPPRCSSADTALLVDYPGHGRLRGGVGQELRGADRIVFMLDGSSL--AAQVAAGAELLYDVLTDPSLEGCR-GLMLALSKSD-LKEAKAPRAKMLLQKELDKLRGTRGMLGTQGEEDDMPSAVALGRPGQPFSLEIDSPCEVVAAGCSVVKEGGLESVLEFV 1095
G A A L L F+ GG G S KR +VL +GPCG+GKTA+ +RL G + V TVTSM+ ++P + T + D+PGH R+R GQ A +I+F++D ++ A + AE LYD+ T P + +M+A SKSD K A + + LL+ EL +L+ TR L GE+D+ ++ LGR PF+ +ID+PCEV S+V L +L+F+
Sbjct: 14 GAAAGAALVLFFVLLKLCSGGSGIRSSKRD-IVLLVGPCGAGKTALFHRLRDG-----PTKVTTVTSMKETMEKFPLFDEENA---TFNICDFPGHERMRSQAGQFYPIAKKIIFVVDSTTANDAGHIRKAAEFLYDIFTHPKVNDAGVPVMIACSKSDETKAATSATVRSLLESELTQLKSTRASLEAHGEDDE---SIPLGRDNAPFAFDIDAPCEVTFENYSIVTPEALNPLLDFI 240
BLAST of mRNA_C-linearis_contig8.15626.1 vs. uniprot
Match: A0A024TLZ7_9STRA (Signal recognition particle receptor subunit beta n=7 Tax=Aphanomyces TaxID=100860 RepID=A0A024TLZ7_9STRA) HSP 1 Score: 117 bits (292), Expect = 1.030e-25 Identity = 87/235 (37.02%), Postives = 127/235 (54.04%), Query Frame = 1
Query: 403 VAIAVLFLLFLSQVGIGGGGGRTSKKRKGVVLFLGPCGSGKTAMCYRLSHGGGQAAASTVATVTSMEACRYPCSPPRCSSADTALLVDYPGHGRLRGGVGQELRGADRIVFMLDGSSL--AAQVAAGAELLYDVLTDPSL-EGCRGLMLALSKSDLKEAKAP-RAKMLLQKELDKLRGTRGMLGTQGEEDDMPSAVALGRPGQPFSLEIDSPCEVVAAGCSVVKEGGLESVLEFV 1095
VA AVL LL + + G KR V+L LGPCG GKTA+ +RL G S V TVTSM+ P A T ++D+PGH RLR V Q A ++VF++D +++ AAQV AE LYD+ P + + L++A SK+D+ A P + LL+ EL +L+ TR L +++ +P LGR PF+ ++D+PCEVV S+ + +L+F+
Sbjct: 16 VAGAVLVLLLAFIIKLAASGSSPGGKRD-VILLLGPCGGGKTALFHRLRDG-----PSKVDTVTSMKE-TLETFPLFDEEAATVSVLDFPGHERLRSQVSQFYPIAKKLVFVVDATTVGDAAQVRKAAEFLYDIFVHPKVHDNGIPLLVACSKADVATAATPSHIQSLLETELSQLKSTRASLEAHDDDESIP----LGRENVPFAFDVDAPCEVVFESYSIHSAEAIAPLLDFI 239
BLAST of mRNA_C-linearis_contig8.15626.1 vs. uniprot
Match: A0A485KDV8_9STRA (Signal recognition particle receptor subunit beta n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KDV8_9STRA) HSP 1 Score: 117 bits (292), Expect = 1.060e-25 Identity = 89/235 (37.87%), Postives = 131/235 (55.74%), Query Frame = 1
Query: 403 VAIAVLFLLFLSQVGIGGGGGRTSKKRKGVVLFLGPCGSGKTAMCYRLSHGGGQAAASTVATVTSMEACRYPCSPPRCSSADTALLVDYPGHGRLRGGVGQELRGADRIVFMLDGSSLA--AQVAAGAELLYDVLTDPSLEGCR-GLMLALSKSDLKEAKAP-RAKMLLQKELDKLRGTRGMLGTQGEEDDMPSAVALGRPGQPFSLEIDSPCEVVAAGCSVVKEGGLESVLEFV 1095
VA AVL LL + + G KR V+L +GPCG GKTA+ +RL G + T+ TVTSM+ SA+ ++L D+PGH RLR V Q A ++VF++D ++++ AQV AE L+DV T P L +++A SKSDL A AP R + LL+ EL +L+ TR L +++ +P LGR PF+ ++D+PCEVV S+ + +L+F+
Sbjct: 16 VAGAVLLLLVAFIIKMAASGSGPGGKRD-VILLVGPCGGGKTALFHRLRDG----PSPTLETVTSMKETLESFPLFDEDSANVSVL-DFPGHERLRSQVSQFYPIAKKLVFVVDSTTVSDPAQVRKAAEFLFDVFTHPKLNDTAIPVLIACSKSDLTTAAAPGRIQSLLEAELTQLKSTRASLEAHDDDESIP----LGRDNVPFAFDVDAPCEVVFETYSIHSAEAIAPLLDFI 240
BLAST of mRNA_C-linearis_contig8.15626.1 vs. uniprot
Match: A0A7S2DSR0_9STRA (Signal recognition particle receptor subunit beta n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DSR0_9STRA) HSP 1 Score: 112 bits (281), Expect = 1.150e-24 Identity = 73/204 (35.78%), Postives = 115/204 (56.37%), Query Frame = 1
Query: 493 VLFLGPCGSGKTAMCYRLSHGGGQAAASTVATVTSMEACRYPCSPPRCSSADTALLVDYPGHGRLRGGVGQELRGADRIVFMLDGSSLAAQVAAGAELLYDVLTDPSLEGCRGLMLALSKSDLKEAK-APRAKMLLQKELDKLRGTRGMLGTQGEEDDMPSAVALGRPGQPFSLEIDSPCEVVAAGCSVVKEGGLESVLEFVRA 1101
VL +GPCG+GKT + +L +GG TVTSM C+ + ++D+PGH R R + +L GA +V ++D S+ + QV ++LL+ VLT P L +++ +K D++ +K A R K+LLQKEL+ +R TRG + +GE+ S + LG+ G+PF + D P A+G ++ EGGL + F+ A
Sbjct: 7 VLLIGPCGAGKTVIFQQLCYGG------VAETVTSMSPAHSECTMGSKDAPKKINVIDFPGHMRQRPALLGQLSGAKGVVVVVDSSN-SKQVKEASDLLFSVLTAPLLPHSTSVLVFCNKMDVEGSKSADRVKVLLQKELETMRNTRGSMSQEGEDGSKGSRM-LGQEGRPFRFDHDMPNITFASGTALAGEGGLSELTTFLTA 202
BLAST of mRNA_C-linearis_contig8.15626.1 vs. uniprot
Match: A0A067D7V6_SAPPC (Signal recognition particle receptor subunit beta n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D7V6_SAPPC) HSP 1 Score: 105 bits (262), Expect = 1.030e-21 Identity = 75/218 (34.40%), Postives = 115/218 (52.75%), Query Frame = 1
Query: 454 GGGGRTSKKRKGVVLFLGPCGSGKTAMCYRLSHGGGQAAASTVATVTSMEACRYPCSPPRCSSADTALLVDYPGHGRLRGGVGQELRGADRIVFMLDGSSL--AAQVAAGAELLYDVLTDPSLEGCR-GLMLALSKSD-LKEAKAPRAKMLLQKELDKLRGTRGMLGTQGEEDDMPSAVALGRPGQPFSLEIDSPCEVVAAGCSVVKEGGLESVLEFV 1095
GGG + VVL +GPCG+GKTA+ +RL +G + V TVTSM+ P T + D+PGH R+R Q A +I+F++D ++ A+ + AE LYD+ T P + +M+A SK+D +K A + LL+ EL +L+ TR L G++D+ ++ LGR F ID+PC+V G S+ L +L+F+
Sbjct: 32 GGGAGLGGSGRDVVLLVGPCGAGKTALFHRLRNG-----PTKVETVTSMKE-TMETFPLFDEENATISICDFPGHERMRSTATQFYPIAKKIIFVVDATTANDASHIRKAAEFLYDIFTHPKINDAGVPVMIACSKTDDVKAATPATVQSLLETELTQLKSTRASLEAHGDDDE---SIPLGRDNALFEFAIDAPCDVTFEGYSIQTPDALNPLLDFI 240
BLAST of mRNA_C-linearis_contig8.15626.1 vs. uniprot
Match: A0A7S3JR42_9STRA (Signal recognition particle receptor subunit beta (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JR42_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 1.100e-18 Identity = 71/190 (37.37%), Postives = 96/190 (50.53%), Query Frame = 1
Query: 475 KKRKGVVLFLGPCGSGKTAMCYRLSHGGGQAAASTVATVTSMEACRYPCSPPRCSSADTALLVDYPGHGRLRGGVGQELRGADRIVFMLDGSSLAAQVAAGAELLYDVL-TDPSLEGCRGLMLALSKSDLKEAKAP-RAKMLLQKELDKLRGTRGMLGTQGEEDDMPSAVA-LGRPGQPFSLEIDSPCEV 1035
+ R +L +GPCGSGKT + YRL H TV TV+SM+ P SP LVD PGH RLRG + EL A I+F+ D S Q AELLY +L T + L+ +KSD K K R K+++ E++ LR T + + + S A LG PGQ F+ + SPC++
Sbjct: 28 RTRSASILIVGPCGSGKTLLFYRLVHD------ETVDTVSSMQPNESPASP----DGLPLRLVDLPGHYRLRGLLPDELECAQAIIFVFDASDALKQAKPAAELLYAILSTFADSKTGPDLLFICNKSDNKVVKTTQRVKLMMMNEIETLRKTENSIQSTADGASSSSEQAKLGIPGQFFNFDAHSPCKI 207
BLAST of mRNA_C-linearis_contig8.15626.1 vs. uniprot
Match: M4B3E5_HYAAE (Signal recognition particle receptor subunit beta n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B3E5_HYAAE) HSP 1 Score: 96.7 bits (239), Expect = 1.730e-18 Identity = 74/213 (34.74%), Postives = 116/213 (54.46%), Query Frame = 1
Query: 469 TSKKRKGVVLFLGPCGSGKTAMCYRLSHGGGQAAASTVATVTSMEACRYPCSPPRCSSADTALLVDYPGHGRLRGGVGQELRGADRIVFMLDGSSLAAQVAAGAELLYDVLTDPSLEGCRG-LMLALSKSDLKEAKAPRA-KMLLQKELDKLRGTRGMLGTQGEEDDMP-SAVALGRPGQPFSLEIDSPCEVVAAGCSVVKEGGLESVLEFVR 1098
T KKRK + L LGP +GKT+ + + G S++ T +P + + T +VDYPGH RLR + A I F +D S + + A AE LYDV + + +M+ +KSD++EA +P+ + L+KEL +L+ TR L T+G+E+D S V +GR G+ F ++D+PCE+ A CSV K+ + V+ F++
Sbjct: 53 TGKKRK-MALLLGPRHAGKTSFFHLVRDGEHAETVSSMKEQTGRFIVHGKYNPDKFDAELT--VVDYPGHERLRPRMADFYPVAGCIAFFVDASDVPSFRQA-AEFLYDVFANKKVNDLTPPIMVVCNKSDMREAVSPQVVRDALEKELTQLKKTRSSLETEGDEEDQDLSQVPVGRDGESFQFDVDAPCEISFAKCSV-KDAEIHDVVRFIQ 260 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15626.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig8.15626.1 >prot_C-linearis_contig8.15626.1 ID=prot_C-linearis_contig8.15626.1|Name=mRNA_C-linearis_contig8.15626.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=357bp MCVTMVLEATTVQVAPMALNRVGGGGSGGRGAVAKNRATAWLLLLLCVAGback to top mRNA from alignment at C-linearis_contig8:2006956..2009492+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig8.15626.1 ID=mRNA_C-linearis_contig8.15626.1|Name=mRNA_C-linearis_contig8.15626.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2537bp|location=Sequence derived from alignment at C-linearis_contig8:2006956..2009492+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig8:2006956..2009492+ >mRNA_C-linearis_contig8.15626.1 ID=mRNA_C-linearis_contig8.15626.1|Name=mRNA_C-linearis_contig8.15626.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2142bp|location=Sequence derived from alignment at C-linearis_contig8:2006956..2009492+ (Chordaria linearis ClinC8C monoicous)back to top |