prot_C-linearis_contig8.15587.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig8.15587.1
Unique Nameprot_C-linearis_contig8.15587.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length89
Homology
BLAST of mRNA_C-linearis_contig8.15587.1 vs. uniprot
Match: A0A6H5LD30_9PHAE (Vps54 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD30_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 4.650e-47
Identity = 80/87 (91.95%), Postives = 83/87 (95.40%), Query Frame = 0
Query:    1 MHNILQQQLPPEQLQAVFRRMFGVITRKVPACFEREGVSPSTAAGRQRILDDIGFACAALSTLRGVDSTTLGLEQAITEIYGKGIDG 87
            MHNILQQQLPPEQLQAVFRRMF VI RKVPACF+REGVSPSTAAGRQRILDD+ FACAALSTLRGVDS+TLGLEQAI EIYGKGIDG
Sbjct:  190 MHNILQQQLPPEQLQAVFRRMFAVIPRKVPACFQREGVSPSTAAGRQRILDDVDFACAALSTLRGVDSSTLGLEQAIAEIYGKGIDG 276          
BLAST of mRNA_C-linearis_contig8.15587.1 vs. uniprot
Match: D7G0A0_ECTSI (Vacuolar protein sorting-associated protein 54 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0A0_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 1.070e-45
Identity = 82/87 (94.25%), Postives = 85/87 (97.70%), Query Frame = 0
Query:    1 MHNILQQQLPPEQLQAVFRRMFGVITRKVPACFEREGVSPSTAAGRQRILDDIGFACAALSTLRGVDSTTLGLEQAITEIYGKGIDG 87
            MHNILQQQLPPEQLQAVFRRMF VITRKVPACF+REGVSPSTAAGRQRILDD+GFACAALSTLRGVDS+TLGLEQAI EIYGKGIDG
Sbjct: 1001 MHNILQQQLPPEQLQAVFRRMFAVITRKVPACFQREGVSPSTAAGRQRILDDVGFACAALSTLRGVDSSTLGLEQAIAEIYGKGIDG 1087          
BLAST of mRNA_C-linearis_contig8.15587.1 vs. uniprot
Match: A0A7S2S5D4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S5D4_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 6.490e-13
Identity = 35/81 (43.21%), Postives = 50/81 (61.73%), Query Frame = 0
Query:    1 MHNILQQQLPPEQLQAVFRRMFGVITRKVPACFEREGVSPSTAAGRQRILDDIGFACAALSTLRGVDSTTLGLEQAITEIY 81
            MH +L  QLPPEQ+Q +F R++ V+  K+P  F    V+P T AG QR++DDI + C +L  LRGV +  L  E+   E +
Sbjct:  372 MHKVLSAQLPPEQVQEIFTRIYAVLNHKLPEYFAE--VNPQTPAGEQRVVDDIQYLCNSLERLRGVSAANLNFEKHFRERF 450          
BLAST of mRNA_C-linearis_contig8.15587.1 vs. uniprot
Match: A0A7S2FL57_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FL57_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.090e-11
Identity = 34/74 (45.95%), Postives = 49/74 (66.22%), Query Frame = 0
Query:    1 MHNILQQQLPPEQLQAVFRRMFGVITRKVPACFEREGVSPSTAAGRQRILDDIGFACAALSTLRGVDSTTLGLE 74
            MH +L  QLPPEQLQ +F R+F ++ +KVP  F    V+PS+ AG QR++DDI +   +L  L+GV +  L L+
Sbjct:  378 MHKVLSAQLPPEQLQEIFSRIFELLNQKVPEYFA--SVTPSSLAGEQRVVDDIQYLTTSLDRLKGVSAANLNLD 449          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15587.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5LD30_9PHAE4.650e-4791.95Vps54 domain-containing protein n=1 Tax=Ectocarpus... [more]
D7G0A0_ECTSI1.070e-4594.25Vacuolar protein sorting-associated protein 54 n=1... [more]
A0A7S2S5D4_9STRA6.490e-1343.21Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2FL57_9STRA1.090e-1145.95Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:1610918..1611878 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15587.1mRNA_C-linearis_contig8.15587.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig8 1609648..1611941 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig8.15587.1 ID=prot_C-linearis_contig8.15587.1|Name=mRNA_C-linearis_contig8.15587.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=89bp
MHNILQQQLPPEQLQAVFRRMFGVITRKVPACFEREGVSPSTAAGRQRIL
DDIGFACAALSTLRGVDSTTLGLEQAITEIYGKGIDGR*
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