mRNA_C-linearis_contig8.15587.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_C-linearis_contig8.15587.1
Unique Name	mRNA_C-linearis_contig8.15587.1
Type	mRNA
Organism	Chordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)

Homology

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BLAST of mRNA_C-linearis_contig8.15587.1 vs. uniprot
Match: A0A6H5LD30_9PHAE (Vps54 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD30_9PHAE)

HSP 1 Score: 190 bits (482), Expect = 1.650e-52
Identity = 93/102 (91.18%), Postives = 97/102 (95.10%), Query Frame = 1

Query:   19 DPCRFTADVRKAVTAMHNILQQQLPPEQLQAVFRRMFGVITRKVPACFEREGVSPSTAAGRQRILDDIGFACAALSTLRGVDSTTLGLEQAITEIYGKGIDG 324
            DPC+FTADVRK VTAMHNILQQQLPPEQLQAVFRRMF VI RKVPACF+REGVSPSTAAGRQRILDD+ FACAALSTLRGVDS+TLGLEQAI EIYGKGIDG
Sbjct:  175 DPCQFTADVRKGVTAMHNILQQQLPPEQLQAVFRRMFAVIPRKVPACFQREGVSPSTAAGRQRILDDVDFACAALSTLRGVDSSTLGLEQAIAEIYGKGIDG 276

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BLAST of mRNA_C-linearis_contig8.15587.1 vs. uniprot
Match: D7G0A0_ECTSI (Vacuolar protein sorting-associated protein 54 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0A0_ECTSI)

HSP 1 Score: 195 bits (495), Expect = 7.780e-50
Identity = 95/102 (93.14%), Postives = 99/102 (97.06%), Query Frame = 1

Query:   19 DPCRFTADVRKAVTAMHNILQQQLPPEQLQAVFRRMFGVITRKVPACFEREGVSPSTAAGRQRILDDIGFACAALSTLRGVDSTTLGLEQAITEIYGKGIDG 324
            DPC+FTADVRK VTAMHNILQQQLPPEQLQAVFRRMF VITRKVPACF+REGVSPSTAAGRQRILDD+GFACAALSTLRGVDS+TLGLEQAI EIYGKGIDG
Sbjct:  986 DPCQFTADVRKGVTAMHNILQQQLPPEQLQAVFRRMFAVITRKVPACFQREGVSPSTAAGRQRILDDVGFACAALSTLRGVDSSTLGLEQAIAEIYGKGIDG 1087

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BLAST of mRNA_C-linearis_contig8.15587.1 vs. uniprot
Match: A0A835YJU9_9STRA (Vacuolar protein sorting-associated protein 54 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJU9_9STRA)

HSP 1 Score: 113 bits (283), Expect = 1.080e-22
Identity = 54/94 (57.45%), Postives = 68/94 (72.34%), Query Frame = 1

Query:   28 RFTADVRKAVTAMHNILQQQLPPEQLQAVFRRMFGVITRKVPACFEREGVSPSTAAGRQRILDDIGFACAALSTLRGVDSTTLGLEQAITEIYG 309
            +F  +V + V+AMH +LQQQLPPEQL+ VF R+F ++ RK+P CF +EGV P+TA GRQRILDD  F   ALSTL GVD + L LE A+   YG
Sbjct:  904 QFMGEVVRGVSAMHKVLQQQLPPEQLKDVFSRIFSLLNRKIPECFAQEGVQPATAGGRQRILDDTSFMATALSTLWGVDGSNLRLEDALQAQYG 997

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BLAST of mRNA_C-linearis_contig8.15587.1 vs. uniprot
Match: A0A7S2S5D4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S5D4_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.380e-14
Identity = 41/98 (41.84%), Postives = 57/98 (58.16%), Query Frame = 1

Query:   13 GGDPCRFTADVRKAVTAMHNILQQQLPPEQLQAVFRRMFGVITRKVPACFEREGVSPSTAAGRQRILDDIGFACAALSTLRGVDSTTLGLEQAITEIY 306
            G   C F  D  K +T MH +L  QLPPEQ+Q +F R++ V+  K+P  F    V+P T AG QR++DDI + C +L  LRGV +  L  E+   E +
Sbjct:  355 GASSCSFITDTVKNITTMHKVLSAQLPPEQVQEIFTRIYAVLNHKLPEYFAE--VNPQTPAGEQRVVDDIQYLCNSLERLRGVSAANLNFEKHFRERF 450

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BLAST of mRNA_C-linearis_contig8.15587.1 vs. uniprot
Match: A0A7S2FL57_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FL57_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 7.760e-12
Identity = 39/91 (42.86%), Postives = 56/91 (61.54%), Query Frame = 1

Query:   13 GGDPCRFTADVRKAVTAMHNILQQQLPPEQLQAVFRRMFGVITRKVPACFEREGVSPSTAAGRQRILDDIGFACAALSTLRGVDSTTLGLE 285
            G   C+F  D  K +  MH +L  QLPPEQLQ +F R+F ++ +KVP  F    V+PS+ AG QR++DDI +   +L  L+GV +  L L+
Sbjct:  361 GNGNCQFITDSIKNMFTMHKVLSAQLPPEQLQEIFSRIFELLNQKVPEYFA--SVTPSSLAGEQRVVDDIQYLTTSLDRLKGVSAANLNLD 449

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig8.15587.1 vs. uniprot

BLAST of mRNA_C-linearis_contig8.15587.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5


Match Name	E-value	Identity	Description
A0A6H5LD30_9PHAE	1.650e-52	91.18	Vps54 domain-containing protein n=1 Tax=Ectocarpus...	[more]
D7G0A0_ECTSI	7.780e-50	93.14	Vacuolar protein sorting-associated protein 54 n=1...	[more]
A0A835YJU9_9STRA	1.080e-22	57.45	Vacuolar protein sorting-associated protein 54 (Fr...	[more]
A0A7S2S5D4_9STRA	1.380e-14	41.84	Hypothetical protein n=1 Tax=Rhizochromulina marin...	[more]
A0A7S2FL57_9STRA	7.760e-12	42.86	Hypothetical protein n=1 Tax=Dictyocha speculum Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-linearis_contig8	contig	C-linearis_contig8:1609648..1611941 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	169.5
Seed ortholog evalue	7.2e-40
Seed eggNOG ortholog	2880.D7G0A0
Preferred name	VPS54
KEGG ko	ko:K10357,ko:K17600
Hectar predicted targeting category	other localisation
GOs	GO:0000003,GO:0000138,GO:0000139,GO:0000149,GO:0000938,GO:0001675,GO:0001894,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005794,GO:0005795,GO:0005802,GO:0006810,GO:0006886,GO:0006892,GO:0006896,GO:0006996,GO:0006997,GO:0007010,GO:0007034,GO:0007041,GO:0007049,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007289,GO:0007290,GO:0007291,GO:0007349,GO:0008104,GO:0008150,GO:0009272,GO:0009507,GO:0009536,GO:0009653,GO:0009987,GO:0010256,GO:0010927,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016482,GO:0019725,GO:0019905,GO:0019953,GO:0022402,GO:0022412,GO:0022413,GO:0022414,GO:0022607,GO:0030154,GO:0030435,GO:0030437,GO:0030476,GO:0031090,GO:0031410,GO:0031505,GO:0031974,GO:0031981,GO:0031982,GO:0031984,GO:0031985,GO:0032456,GO:0032501,GO:0032502,GO:0032504,GO:0032505,GO:0032588,GO:0032989,GO:0032991,GO:0033036,GO:0033363,GO:0034293,GO:0034613,GO:0040008,GO:0042147,GO:0042244,GO:0042546,GO:0042592,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043934,GO:0043935,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045103,GO:0045104,GO:0045184,GO:0045229,GO:0046907,GO:0048193,GO:0048232,GO:0048468,GO:0048471,GO:0048515,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0048871,GO:0048872,GO:0048873,GO:0048878,GO:0050789,GO:0050879,GO:0050881,GO:0051179,GO:0051234,GO:0051321,GO:0051641,GO:0051649,GO:0051704,GO:0055082,GO:0055088,GO:0060052,GO:0060249,GO:0065007,GO:0065008,GO:0070013,GO:0070590,GO:0070591,GO:0070726,GO:0070727,GO:0070925,GO:0071554,GO:0071555,GO:0071702,GO:0071705,GO:0071840,GO:0071852,GO:0071940,GO:0090156,GO:0097708,GO:0098588,GO:0098791,GO:0099023,GO:1903046
EggNOG free text desc.	Vacuolar protein sorting-associated protein
EggNOG OGs	KOG2115@1,KOG2115@2759
COG Functional cat.	L
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko01009,ko03019,ko03029,ko04131,ko04812
Exons	2
Model size	1600
Cds size	267
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig8.15587.1	prot_C-linearis_contig8.15587.1	Chordaria linearis ClinC8C monoicous	polypeptide	C-linearis_contig8 1610918..1611878 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930531.6834445-UTR-C-linearis_contig8:1609647..1610917	1622930531.6834445-UTR-C-linearis_contig8:1609647..1610917	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig8 1609648..1610917 -
1690881117.5215542-UTR-C-linearis_contig8:1609647..1610917	1690881117.5215542-UTR-C-linearis_contig8:1609647..1610917	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig8 1609648..1610917 -
1622930531.7279513-UTR-C-linearis_contig8:1611878..1611941	1622930531.7279513-UTR-C-linearis_contig8:1611878..1611941	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig8 1611879..1611941 -
1690881117.555128-UTR-C-linearis_contig8:1611878..1611941	1690881117.555128-UTR-C-linearis_contig8:1611878..1611941	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig8 1611879..1611941 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930531.6956935-CDS-C-linearis_contig8:1610917..1611139	1622930531.6956935-CDS-C-linearis_contig8:1610917..1611139	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig8 1610918..1611139 -
1690881117.5357468-CDS-C-linearis_contig8:1610917..1611139	1690881117.5357468-CDS-C-linearis_contig8:1610917..1611139	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig8 1610918..1611139 -
1622930531.711659-CDS-C-linearis_contig8:1611833..1611878	1622930531.711659-CDS-C-linearis_contig8:1611833..1611878	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig8 1611834..1611878 -
1690881117.5452304-CDS-C-linearis_contig8:1611833..1611878	1690881117.5452304-CDS-C-linearis_contig8:1611833..1611878	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig8 1611834..1611878 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-linearis_contig8:1609648..1611941-
coding sequence from alignment at C-linearis_contig8:1609648..1611941-

protein sequence of mRNA_C-linearis_contig8.15587.1

>prot_C-linearis_contig8.15587.1 ID=prot_C-linearis_contig8.15587.1|Name=mRNA_C-linearis_contig8.15587.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=89bp
MHNILQQQLPPEQLQAVFRRMFGVITRKVPACFEREGVSPSTAAGRQRIL
DDIGFACAALSTLRGVDSTTLGLEQAITEIYGKGIDGR*

mRNA from alignment at C-linearis_contig8:1609648..1611941-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-linearis_contig8.15587.1 ID=mRNA_C-linearis_contig8.15587.1|Name=mRNA_C-linearis_contig8.15587.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2294bp|location=Sequence derived from alignment at C-linearis_contig8:1609648..1611941- (Chordaria linearis ClinC8C monoicous)
GGGGCGGCGGCGGGGGGGGACCCGTGCCGGTTCACGGCGGATGTCCGGAA
GGCCGTGACGGCCATGCACAACATCCTGCAGCAACAGCTCCCGCCGGAAC
AGCTGCAGGTATGGTGGGCACTCAATTTCTCCGATACGTTGGTTCCGTTT
GTGAATGCGCATGCGTGCGGGCTGTTGGAGGTGACTGCTGCTGGCTCGGC
TCGGTTCGGTTCGGTTCGGTTCGGTTCGGTTCGGTTCGGTTTACAGCGGA
GTTGACAGCAGTACATGCAGTACTTGGTTTTTGAGGTTTGAGTTCTCGAC
GTTCGTCAGTGGTGTGTGTGTGTTTTGTTTTTTAGCAGAGAACCGGCGAA
ACTTCGGGCGTGGTATTTATGTTTATGCAGGAGGTTCTCTCTCTGTCTTT
CAGGCAGGTTTGTTTATGCAGGCGCGCGTGCGCATAAGGTGTATGGTATG
GTGTAGGACAGGGCTTTGTCGGGATACAGAGAGGGCGGAGCGCACTTGAT
GGCCAAGAGCGACAAAGTTGAAAGAATGCTCTACTAAACGCCAGCGGCAT
GCATGCGTCCAACCCGTGAACAAGCCGTCCCAGTAGGGCTGACTGTTGTA
GACACACTGGCCCTCCCTCGCCCATCCCATACTACAGATACTCATCTTAG
GATCTATGACAGGTACTAATATTAGGATCTAGGTACCCTAAACCCCGCCC
CCATGTTGTGATGGCCGCGACGCCCGTGTGAATTGAAATGAATGCACGAC
AAATTGTCCATACCCTCCCCCGTTTTCACCACCCCACCCCACCCTATCCC
AGGCGGTGTTCCGTCGGATGTTCGGCGTGATAACGCGCAAGGTGCCGGCG
TGCTTCGAGCGGGAGGGGGTGTCGCCGTCGACCGCCGCCGGGCGGCAGCG
TATCCTGGACGACATTGGCTTCGCCTGCGCCGCCCTGTCGACGCTACGCG
GGGTGGACTCGACCACGCTCGGCCTCGAGCAGGCCATCACCGAGATTTAC
GGCAAGGGCATCGACGGTAGGTAGCGGTAGCGGCGGCGGCGGTAGAGGTA
GTCCGCCGGCAGCGGCCGCGGCCAGAGCGTAGCGTAGGGTAGGGAAGGGC
AGGCGGGAACGAACGGACGGACGGACGCCGGTCGGTGTGACTTTTATTTA
GGTTTGCATGTGTTTTTTGTGTGCTTGTGTGGCGTGTATATCTTACTGGT
TGTTGTTGGCGACCGGCCGACCGCGCTTAATTAGCCAGCGAGGCAGAGGA
CGTGACTCGCGGTCTCAGCGGGTAGAAACGAGAAACGAGAATCGGTTTCT
ACAGGCCGATCGGTAGGCCGTCCGCTTTCCATGCGCGTGTGGGGCGTGCA
TGTAGATATGTGTCATTTTTTTTGTGGTCAAAAGCATTTTCAGGCCCAAA
CCGTCCCCGTCGCGGCAGCAGTAGCAGCAGTAGGAGCAAGCGCGATTGGT
TGCCTTTGTCTTTTCGAGTCTTGGATGCAATGGCGAGGTCAAGATGCACG
AGCGAGCGTTCTTTTATGGTGCTGTTGCCGTTCCAACCAGACTATTTAAA
CTCTTTTTGGTGGCAGTGGCAAGATGCACGAGCTAGCGTTTCTTGTCTCG
AGAAAGACACGCCCTACACTGTGCATTCATACGAAGTCATATGACGCCAT
TTTGCTCTCGGCTGCTTTGAGGCAATGAAAAAGTGGACCGGTTCGGACCT
CTCATACGCCGAACGAACTCTTATTAGGCGGAGCCTACCTGGTAAAATGG
CATGTGTTTGCTGTTCCGGTGTCGTGGTTGGCGGAGGTGTTTTTCATCGC
GCTCGGTGTACCGGTATGTATGACGAAATTACAGCGTCCCAGTGAAAGTA
TGGTGGCTCTCTCCCTGGTGTTCGTACTAAGGAAGTGTATTTTGAAGTTT
TGCTGCCCTCTTGCAAGCAGCGAGTGCGTCGGTGAGTGGGGATGGTTCGT
CAGTATACCGTGGACACGGCACGAGTTGGCGGCGATCGCACAGGAGTGGG
GGCGTGATCGTGAGATGGCGTACACGTTGATAAACTAGACCCTAGTTGTT
GTGTAGGAGAGAGAGTACTACATTTTTTCTTGTTTTGCGTGCCAAGTGTG
CCGCGCTGTGCGGATTCGCCCGCCTCCGCGTGCTGCGAAAACTCTTGTTC
CGCTCTGTTGATGGTGGCGATCTCAGGAACCCACGGCTGTTTGCCGCACC
ACACTGTTTTGATGACACTTCAATTTACTCGACAAAACATGAATACGGAC
CTATATAATATCACTGTTATGAGGCGCGCGGGCGAAAATATGAA

Coding sequence (CDS) from alignment at C-linearis_contig8:1609648..1611941-

>mRNA_C-linearis_contig8.15587.1 ID=mRNA_C-linearis_contig8.15587.1|Name=mRNA_C-linearis_contig8.15587.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at C-linearis_contig8:1609648..1611941- (Chordaria linearis ClinC8C monoicous)
ATGCACAACATCCTGCAGCAACAGCTCCCGCCGGAACAGCTGCAGATGCA
CAACATCCTGCAGCAACAGCTCCCGCCGGAACAGCTGCAGGCGGTGTTCC
GTCGGATGTTCGGCGTGATAACGCGCAAGGTGCCGGCGTGCTTCGAGCGG
GAGGGGGTGTCGCCGTCGACCGCCGCCGGGCGGCAGCGTATCCTGGACGA
CATTGGCTTCGCCTGCGCCGCCCTGTCGACGCTACGCGGGGTGGACTCGA
CCACGCTCGGCCTCGAGCAGGCCATCACCGAGATTTACGGCAAGGGCATC
GACGGTAGGTAGGCGGTGTTCCGTCGGATGTTCGGCGTGATAACGCGCAA
GGTGCCGGCGTGCTTCGAGCGGGAGGGGGTGTCGCCGTCGACCGCCGCCG
GGCGGCAGCGTATCCTGGACGACATTGGCTTCGCCTGCGCCGCCCTGTCG
ACGCTACGCGGGGTGGACTCGACCACGCTCGGCCTCGAGCAGGCCATCAC
CGAGATTTACGGCAAGGGCATCGACGGTAGGTAG