prot_C-linearis_contig8.15525.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig8.15525.1
Unique Nameprot_C-linearis_contig8.15525.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length183
Homology
BLAST of mRNA_C-linearis_contig8.15525.1 vs. uniprot
Match: A0A6H5KM82_9PHAE (Golgi apparatus membrane protein TVP23 homolog n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM82_9PHAE)

HSP 1 Score: 310 bits (794), Expect = 2.730e-103
Identity = 166/180 (92.22%), Postives = 173/180 (96.11%), Query Frame = 0
Query:    1 MGGFKFVSSSSILTYIICILMLAFDFWTVKNVSGRLMVGLRWWSNVKEDGTTEWVFESLEDMSEISSADYKLFWIGLYGTPILWVGLLITGIMLLKFQWLVIVVIALLLSGANIYGYTKCNADAKVKVQQMVNDGMMAGAMQGAQAALGNAGLRNALFSMFGGDPAQQGXXXXXXXXSAN 180
            MG FKFVSSSS++TYIICILMLAFDFWTVKNVSGRLMVGLRWWSNV  DGTTEWVFESLEDMSEI+SADYKLFWIGLYGTP+LWV LL+TGIMLLKFQWLVIVVIALLLSGANIYGYTKCNAD+KVKVQQMVNDGMMAGAMQGAQAALGN GLRNALFSMFGGD AQQG XXXXXXXS+N
Sbjct:  181 MGNFKFVSSSSVMTYIICILMLAFDFWTVKNVSGRLMVGLRWWSNVTADGTTEWVFESLEDMSEINSADYKLFWIGLYGTPVLWVCLLVTGIMLLKFQWLVIVVIALLLSGANIYGYTKCNADSKVKVQQMVNDGMMAGAMQGAQAALGNVGLRNALFSMFGGDQAQQGGXXXXXXXSSN 360          
BLAST of mRNA_C-linearis_contig8.15525.1 vs. uniprot
Match: D7FV24_ECTSI (Golgi apparatus membrane protein TVP23 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV24_ECTSI)

HSP 1 Score: 301 bits (772), Expect = 3.180e-102
Identity = 160/192 (83.33%), Postives = 165/192 (85.94%), Query Frame = 0
Query:    1 MGGFKFVSSSSILTYIICILMLAFDFWTVKNVSGRLM-----------------------VGLRWWSNVKEDGTTEWVFESLEDMSEISSADYKLFWIGLYGTPILWVGLLITGIMLLKFQWLVIVVIALLLSGANIYGYTKCNADAKVKVQQMVNDGMMAGAMQGAQAALGNAGLRNALFSMFGGDPAQQG 169
            MG FKFVSSSS++TYIICILMLAFDFWTVKNVSGRLM                       VGLRWWSNVKEDGTTEWVFESLEDMSEI+SADYKLFWIGLYGTP+LWV LL+TGIMLLKFQWLVIVVIALLLSGANIYGYTKCNADAKVKVQQMVNDGMMAGAMQGAQAALGN GLRNALFSMFGGD AQQG
Sbjct:    1 MGNFKFVSSSSVMTYIICILMLAFDFWTVKNVSGRLMRPGGVGGGWVGIETSRVESNAVQVGLRWWSNVKEDGTTEWVFESLEDMSEINSADYKLFWIGLYGTPVLWVCLLVTGIMLLKFQWLVIVVIALLLSGANIYGYTKCNADAKVKVQQMVNDGMMAGAMQGAQAALGNVGLRNALFSMFGGDQAQQG 192          
BLAST of mRNA_C-linearis_contig8.15525.1 vs. uniprot
Match: A0A7S2V0N0_9STRA (Golgi apparatus membrane protein TVP23 homolog n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0N0_9STRA)

HSP 1 Score: 193 bits (490), Expect = 2.540e-59
Identity = 94/156 (60.26%), Postives = 123/156 (78.85%), Query Frame = 0
Query:    8 SSSSILTYIICILMLAFDFWTVKNVSGRLMVGLRWWSNVKEDGTTEWVFESLEDMSEISSADYKLFWIGLYGTPILWVGLLITGIMLLKFQWLVIVVIALLLSGANIYGYTKCNADAKVKVQQMVNDGMMAGAMQGAQAALGNAGLRNALFSMFGG 163
            SS+ +  +++C+L LAFDFWTVKNVSGRL+VGLRWW+NVKEDGTTEW FESLEDM+E+SSAD +LFW+G+YG P+ W+ + I  ++ L FQWL+IVV+AL L+GANI GY KC+ DA+ K++ MV D  + GAM      LG+AG+RNALF +  G
Sbjct:   40 SSNFVFIFVLCVLCLAFDFWTVKNVSGRLLVGLRWWNNVKEDGTTEWRFESLEDMTEVSSADSRLFWLGMYGAPLAWLVVFIVDLLKLNFQWLIIVVVALTLNGANIVGYIKCSNDARQKLRFMVEDAGVKGAMS----VLGSAGVRNALFGLLAG 191          
BLAST of mRNA_C-linearis_contig8.15525.1 vs. uniprot
Match: A0A835Z0U0_9STRA (Golgi apparatus membrane protein TVP23 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0U0_9STRA)

HSP 1 Score: 191 bits (486), Expect = 2.830e-58
Identity = 98/157 (62.42%), Postives = 118/157 (75.16%), Query Frame = 0
Query:    7 VSSSSILTYIICILMLAFDFWTVKNVSGRLMVGLRWWSNVKEDGTTEWVFESLEDMSEISSADYKLFWIGLYGTPILWVGLLITGIMLLKFQWLVIVVIALLLSGANIYGYTKCNADAKVKVQQMVNDGMMAGAMQGAQAALGNAGLRNALFSMFGG 163
            +SS+ +L  +  IL+LAFDFWTVKN++GRLMVGLRWWSNVKEDGTT WVFESLE+MSEI  AD KLFWIGLY  P +WV L I G++    QWL+IVV+A+LLS ANI GYTKC+ DAK KV+  + DG MA        A+GNAG RN +FS+  G
Sbjct:   80 ISSNFVLICVATILLLAFDFWTVKNITGRLMVGLRWWSNVKEDGTTSWVFESLENMSEIQPADSKLFWIGLYAAPAVWVALFIIGLLKFNLQWLIIVVVAILLSTANIVGYTKCSNDAKNKVRNFMQDGAMA--------AMGNAGFRNMMFSVLTG 228          
BLAST of mRNA_C-linearis_contig8.15525.1 vs. uniprot
Match: A0A7S3MG51_9STRA (Golgi apparatus membrane protein TVP23 homolog n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MG51_9STRA)

HSP 1 Score: 171 bits (432), Expect = 3.650e-50
Identity = 84/155 (54.19%), Postives = 118/155 (76.13%), Query Frame = 0
Query:    5 KFVSSSSILTYIICILMLAFDFWTVKNVSGRLMVGLRWWSNVKEDGTTEWVFESLEDMSEISSADYKLFWIGLYGTPILWVGLLITGIMLLKFQWLVIVVIALLLSGANIYGYTKCNADAKVKVQQMVNDGMMAGAMQGAQAALGNAGLRNALFS 159
             +V+++ I  ++ICI++LAFDFWTVKNVSGRL+VGLRWWS VK+DG+ EW+FESLEDM+EIS  D ++FW GLY +P+ W+ LLI G + L+F++L +V+ AL+L+GANI GY KC++ AK K++ M+  GM     QG+ A L N  +RN + S
Sbjct:   69 SWVTTNFIFVFVICIVLLAFDFWTVKNVSGRLLVGLRWWSYVKDDGSNEWIFESLEDMAEISPVDSRMFWGGLYVSPLCWLFLLIVGFLRLQFEYLPLVIAALMLNGANILGYIKCSSSAKAKMESMMKQGMQ----QGSMAVLENNSVRNWVLS 219          
BLAST of mRNA_C-linearis_contig8.15525.1 vs. uniprot
Match: A0A6V1M0B7_HETAK (Golgi apparatus membrane protein TVP23 homolog n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1M0B7_HETAK)

HSP 1 Score: 170 bits (430), Expect = 7.320e-50
Identity = 82/156 (52.56%), Postives = 107/156 (68.59%), Query Frame = 0
Query:    8 SSSSILTYIICILMLAFDFWTVKNVSGRLMVGLRWWSNVKEDGTTEWVFESLEDMSEISSADYKLFWIGLYGTPILWVGLLITGIMLLKFQWLVIVVIALLLSGANIYGYTKCNADAKVKVQQMVNDGMMAGAMQGAQAALGNAGLRNALFSMFGG 163
            SS+ I  +++C+L+LA DFWTVKNV+GRL+VGLRWWS+V EDG T+WVFESLED+ E+ + D +LFW+GLY TP  W  L + G++    QWL++VV+AL LSGANI GYTKC  DAK K+Q  V  G+           + + G RN   S F G
Sbjct:   74 SSNFIFLFVLCVLLLAADFWTVKNVTGRLLVGLRWWSHVSEDGKTDWVFESLEDLGEVHAGDARLFWLGLYATPAAWAALFVIGLLKFNLQWLIVVVVALALSGANIIGYTKCRKDAKQKLQGFVESGVTG--------LMASEGFRNTFLSFFTG 221          
BLAST of mRNA_C-linearis_contig8.15525.1 vs. uniprot
Match: A0A485KG22_9STRA (Golgi apparatus membrane protein TVP23 homolog n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KG22_9STRA)

HSP 1 Score: 169 bits (428), Expect = 1.900e-49
Identity = 82/150 (54.67%), Postives = 111/150 (74.00%), Query Frame = 0
Query:    1 MGGFKFVSSSSILTYIICILMLAFDFWTVKNVSGRLMVGLRWWSNVKEDGTTEWVFESLEDMSEISSADYKLFWIGLYGTPILWVGLLITGIMLLKFQWLVIVVIALLLSGANIYGYTKCNADAKVKVQQMVNDGMMAGAMQGAQAALGN 150
            +GG   +S S +  ++IC+L+LAFDFWTVKNVSGRL+VGLRWW+ + EDG+ EWVFESLEDMSEI   D K+FW GLYG P++WV  L+  ++ L  +W +I ++AL LSGAN+ GYTKC+ DAK K+Q M    M AGA++   ++ G+
Sbjct:   79 LGGI--MSDSFVFVFVICVLLLAFDFWTVKNVSGRLLVGLRWWNRINEDGSNEWVFESLEDMSEIDPLDAKIFWTGLYGAPVVWVLFLLIAVLKLNVEWALIAIVALTLSGANVVGYTKCSKDAKNKMQSM----MTAGALEALNSSAGS 222          
BLAST of mRNA_C-linearis_contig8.15525.1 vs. uniprot
Match: A0A812Z9G7_SYMMI (Golgi apparatus membrane protein TVP23 homolog n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812Z9G7_SYMMI)

HSP 1 Score: 166 bits (419), Expect = 4.920e-49
Identity = 82/152 (53.95%), Postives = 116/152 (76.32%), Query Frame = 0
Query:    8 SSSSILTYIICILMLAFDFWTVKNVSGRLMVGLRWWSNVKEDGTTEWVFESLEDMSEISSADYKLFWIGLYGTPILWVGLLITGIMLLKFQWLVIVVIALLLSGANIYGYTKCNADAKVKVQQMVNDGMMAGAMQGAQAALGNAGLRNALFS 159
            +S+ I+ +++CI++LAFDFWTVKNV+GRL+VGLRWWS V+EDG  EW+FESLEDM+E+S+ D +LFW  LY TP+ W  LL+ G++ LK ++L IV+ AL+LS ANI GY KC+  A+ KV+ ++ +G+     QG+ AAL N+ LRN + S
Sbjct:    7 TSNFIVVFVVCIILLAFDFWTVKNVTGRLLVGLRWWSYVREDGGNEWIFESLEDMAEVSAFDSRLFWGALYVTPVFWTLLLLMGLLRLKIEYLPIVIAALMLSSANIMGYIKCSNSAQAKVRNLMENGIK----QGSMAALENSSLRNWILS 154          
BLAST of mRNA_C-linearis_contig8.15525.1 vs. uniprot
Match: A0A024TJ00_9STRA (Golgi apparatus membrane protein TVP23 homolog n=9 Tax=Aphanomyces TaxID=100860 RepID=A0A024TJ00_9STRA)

HSP 1 Score: 165 bits (418), Expect = 7.470e-48
Identity = 80/149 (53.69%), Postives = 108/149 (72.48%), Query Frame = 0
Query:    1 MGGFKFVSSSSILTYIICILMLAFDFWTVKNVSGRLMVGLRWWSNVKEDGTTEWVFESLEDMSEISSADYKLFWIGLYGTPILWVGLLITGIMLLKFQWLVIVVIALLLSGANIYGYTKCNADAKVKVQQMVNDGMMAGAMQGAQAALG 149
            +GGF  VS+S +  ++IC+L+LAFDFWTVKNVSGRL+VGLRWW+ + EDG+ +WVFESLEDMSEI   D K+FW  LYG P+ W   L+  ++ L  +W +I ++AL LSGAN+ GYTKC+ DAK K+  M    M AGA++   ++ G
Sbjct:   82 LGGF--VSNSFVFIFVICVLLLAFDFWTVKNVSGRLLVGLRWWNRINEDGSNDWVFESLEDMSEIDPLDAKIFWTALYGAPVAWALFLLVAVLKLNVEWALIAIVALTLSGANVVGYTKCSKDAKSKMHSM----MTAGALEALNSSAG 224          
BLAST of mRNA_C-linearis_contig8.15525.1 vs. uniprot
Match: A0A6G0W9V7_9STRA (Golgi apparatus membrane protein TVP23 homolog n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W9V7_9STRA)

HSP 1 Score: 164 bits (416), Expect = 1.130e-47
Identity = 74/137 (54.01%), Postives = 103/137 (75.18%), Query Frame = 0
Query:    1 MGGFKFVSSSSILTYIICILMLAFDFWTVKNVSGRLMVGLRWWSNVKEDGTTEWVFESLEDMSEISSADYKLFWIGLYGTPILWVGLLITGIMLLKFQWLVIVVIALLLSGANIYGYTKCNADAKVKVQQMVNDGMM 137
            +GGF  VS+S +  ++IC+L+LAFDFWTVKN+SGRL+VGLRWW+ + EDG+ EW+FESLEDMSEI   D ++FW  LYG P++W   L+  I+    +W +I ++AL LSGAN+ GYTKC+ DAK K++ M+  G +
Sbjct:   76 LGGF--VSNSFVFIFVICVLLLAFDFWTVKNISGRLLVGLRWWNRINEDGSNEWIFESLEDMSEIDPLDARIFWTSLYGAPVVWAFFLLIAILKFNVEWALIAIVALTLSGANVVGYTKCSKDAKDKMRSMMTSGAL 210          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15525.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KM82_9PHAE2.730e-10392.22Golgi apparatus membrane protein TVP23 homolog n=1... [more]
D7FV24_ECTSI3.180e-10283.33Golgi apparatus membrane protein TVP23 homolog n=1... [more]
A0A7S2V0N0_9STRA2.540e-5960.26Golgi apparatus membrane protein TVP23 homolog n=1... [more]
A0A835Z0U0_9STRA2.830e-5862.42Golgi apparatus membrane protein TVP23 homolog n=1... [more]
A0A7S3MG51_9STRA3.650e-5054.19Golgi apparatus membrane protein TVP23 homolog n=1... [more]
A0A6V1M0B7_HETAK7.320e-5052.56Golgi apparatus membrane protein TVP23 homolog n=1... [more]
A0A485KG22_9STRA1.900e-4954.67Golgi apparatus membrane protein TVP23 homolog n=1... [more]
A0A812Z9G7_SYMMI4.920e-4953.95Golgi apparatus membrane protein TVP23 homolog n=1... [more]
A0A024TJ00_9STRA7.470e-4853.69Golgi apparatus membrane protein TVP23 homolog n=9... [more]
A0A6G0W9V7_9STRA1.130e-4754.01Golgi apparatus membrane protein TVP23 homolog n=1... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008564Golgi apparatus membrane protein TVP23-likePFAMPF05832DUF846coord: 5..120
e-value: 1.4E-42
score: 145.0
IPR008564Golgi apparatus membrane protein TVP23-likePANTHERPTHR13019UNCHARACTERIZEDcoord: 5..141
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 72..93
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 99..117
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 118..182
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 28..71
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 94..98
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..27
NoneNo IPR availableTMHMMTMhelixcoord: 72..94
NoneNo IPR availableTMHMMTMhelixcoord: 10..29
NoneNo IPR availableTMHMMTMhelixcoord: 98..117

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:1047771..1049249 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15525.1mRNA_C-linearis_contig8.15525.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig8 1047771..1049249 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig8.15525.1 ID=prot_C-linearis_contig8.15525.1|Name=mRNA_C-linearis_contig8.15525.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=183bp
MGGFKFVSSSSILTYIICILMLAFDFWTVKNVSGRLMVGLRWWSNVKEDG
TTEWVFESLEDMSEISSADYKLFWIGLYGTPILWVGLLITGIMLLKFQWL
VIVVIALLLSGANIYGYTKCNADAKVKVQQMVNDGMMAGAMQGAQAALGN
AGLRNALFSMFGGDPAQQGGSGGGAASSANNV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008564TVP23-like