mRNA_C-linearis_contig8.15525.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig8.15525.1 vs. uniprot
Match: A0A6H5KM82_9PHAE (Golgi apparatus membrane protein TVP23 homolog n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM82_9PHAE) HSP 1 Score: 310 bits (794), Expect = 2.730e-103 Identity = 166/180 (92.22%), Postives = 173/180 (96.11%), Query Frame = 1
Query: 1 MGGFKFVSSSSILTYIICILMLAFDFWTVKNVSGRLMVGLRWWSNVKEDGTTEWVFESLEDMSEISSADYKLFWIGLYGTPILWVGLLITGIMLLKFQWLVIVVIALLLSGANIYGYTKCNADAKVKVQQMVNDGMMAGAMQGAQAALGNAGLRNALFSMFGGDPAQQGXXXXXXXXSAN 540
MG FKFVSSSS++TYIICILMLAFDFWTVKNVSGRLMVGLRWWSNV DGTTEWVFESLEDMSEI+SADYKLFWIGLYGTP+LWV LL+TGIMLLKFQWLVIVVIALLLSGANIYGYTKCNAD+KVKVQQMVNDGMMAGAMQGAQAALGN GLRNALFSMFGGD AQQG XXXXXXXS+N
Sbjct: 181 MGNFKFVSSSSVMTYIICILMLAFDFWTVKNVSGRLMVGLRWWSNVTADGTTEWVFESLEDMSEINSADYKLFWIGLYGTPVLWVCLLVTGIMLLKFQWLVIVVIALLLSGANIYGYTKCNADSKVKVQQMVNDGMMAGAMQGAQAALGNVGLRNALFSMFGGDQAQQGGXXXXXXXSSN 360
BLAST of mRNA_C-linearis_contig8.15525.1 vs. uniprot
Match: D7FV24_ECTSI (Golgi apparatus membrane protein TVP23 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV24_ECTSI) HSP 1 Score: 301 bits (772), Expect = 3.180e-102 Identity = 160/192 (83.33%), Postives = 165/192 (85.94%), Query Frame = 1
Query: 1 MGGFKFVSSSSILTYIICILMLAFDFWTVKNVSGRLM-----------------------VGLRWWSNVKEDGTTEWVFESLEDMSEISSADYKLFWIGLYGTPILWVGLLITGIMLLKFQWLVIVVIALLLSGANIYGYTKCNADAKVKVQQMVNDGMMAGAMQGAQAALGNAGLRNALFSMFGGDPAQQG 507
MG FKFVSSSS++TYIICILMLAFDFWTVKNVSGRLM VGLRWWSNVKEDGTTEWVFESLEDMSEI+SADYKLFWIGLYGTP+LWV LL+TGIMLLKFQWLVIVVIALLLSGANIYGYTKCNADAKVKVQQMVNDGMMAGAMQGAQAALGN GLRNALFSMFGGD AQQG
Sbjct: 1 MGNFKFVSSSSVMTYIICILMLAFDFWTVKNVSGRLMRPGGVGGGWVGIETSRVESNAVQVGLRWWSNVKEDGTTEWVFESLEDMSEINSADYKLFWIGLYGTPVLWVCLLVTGIMLLKFQWLVIVVIALLLSGANIYGYTKCNADAKVKVQQMVNDGMMAGAMQGAQAALGNVGLRNALFSMFGGDQAQQG 192
BLAST of mRNA_C-linearis_contig8.15525.1 vs. uniprot
Match: A0A7S2V0N0_9STRA (Golgi apparatus membrane protein TVP23 homolog n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0N0_9STRA) HSP 1 Score: 193 bits (490), Expect = 2.540e-59 Identity = 94/156 (60.26%), Postives = 123/156 (78.85%), Query Frame = 1
Query: 22 SSSSILTYIICILMLAFDFWTVKNVSGRLMVGLRWWSNVKEDGTTEWVFESLEDMSEISSADYKLFWIGLYGTPILWVGLLITGIMLLKFQWLVIVVIALLLSGANIYGYTKCNADAKVKVQQMVNDGMMAGAMQGAQAALGNAGLRNALFSMFGG 489
SS+ + +++C+L LAFDFWTVKNVSGRL+VGLRWW+NVKEDGTTEW FESLEDM+E+SSAD +LFW+G+YG P+ W+ + I ++ L FQWL+IVV+AL L+GANI GY KC+ DA+ K++ MV D + GAM LG+AG+RNALF + G
Sbjct: 40 SSNFVFIFVLCVLCLAFDFWTVKNVSGRLLVGLRWWNNVKEDGTTEWRFESLEDMTEVSSADSRLFWLGMYGAPLAWLVVFIVDLLKLNFQWLIIVVVALTLNGANIVGYIKCSNDARQKLRFMVEDAGVKGAMS----VLGSAGVRNALFGLLAG 191
BLAST of mRNA_C-linearis_contig8.15525.1 vs. uniprot
Match: A0A835Z0U0_9STRA (Golgi apparatus membrane protein TVP23 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0U0_9STRA) HSP 1 Score: 191 bits (486), Expect = 2.830e-58 Identity = 98/157 (62.42%), Postives = 118/157 (75.16%), Query Frame = 1
Query: 19 VSSSSILTYIICILMLAFDFWTVKNVSGRLMVGLRWWSNVKEDGTTEWVFESLEDMSEISSADYKLFWIGLYGTPILWVGLLITGIMLLKFQWLVIVVIALLLSGANIYGYTKCNADAKVKVQQMVNDGMMAGAMQGAQAALGNAGLRNALFSMFGG 489
+SS+ +L + IL+LAFDFWTVKN++GRLMVGLRWWSNVKEDGTT WVFESLE+MSEI AD KLFWIGLY P +WV L I G++ QWL+IVV+A+LLS ANI GYTKC+ DAK KV+ + DG MA A+GNAG RN +FS+ G
Sbjct: 80 ISSNFVLICVATILLLAFDFWTVKNITGRLMVGLRWWSNVKEDGTTSWVFESLENMSEIQPADSKLFWIGLYAAPAVWVALFIIGLLKFNLQWLIIVVVAILLSTANIVGYTKCSNDAKNKVRNFMQDGAMA--------AMGNAGFRNMMFSVLTG 228
BLAST of mRNA_C-linearis_contig8.15525.1 vs. uniprot
Match: A0A7S3MG51_9STRA (Golgi apparatus membrane protein TVP23 homolog n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MG51_9STRA) HSP 1 Score: 171 bits (432), Expect = 3.650e-50 Identity = 84/155 (54.19%), Postives = 118/155 (76.13%), Query Frame = 1
Query: 13 KFVSSSSILTYIICILMLAFDFWTVKNVSGRLMVGLRWWSNVKEDGTTEWVFESLEDMSEISSADYKLFWIGLYGTPILWVGLLITGIMLLKFQWLVIVVIALLLSGANIYGYTKCNADAKVKVQQMVNDGMMAGAMQGAQAALGNAGLRNALFS 477
+V+++ I ++ICI++LAFDFWTVKNVSGRL+VGLRWWS VK+DG+ EW+FESLEDM+EIS D ++FW GLY +P+ W+ LLI G + L+F++L +V+ AL+L+GANI GY KC++ AK K++ M+ GM QG+ A L N +RN + S
Sbjct: 69 SWVTTNFIFVFVICIVLLAFDFWTVKNVSGRLLVGLRWWSYVKDDGSNEWIFESLEDMAEISPVDSRMFWGGLYVSPLCWLFLLIVGFLRLQFEYLPLVIAALMLNGANILGYIKCSSSAKAKMESMMKQGMQ----QGSMAVLENNSVRNWVLS 219
BLAST of mRNA_C-linearis_contig8.15525.1 vs. uniprot
Match: A0A6V1M0B7_HETAK (Golgi apparatus membrane protein TVP23 homolog n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1M0B7_HETAK) HSP 1 Score: 170 bits (430), Expect = 7.320e-50 Identity = 82/156 (52.56%), Postives = 107/156 (68.59%), Query Frame = 1
Query: 22 SSSSILTYIICILMLAFDFWTVKNVSGRLMVGLRWWSNVKEDGTTEWVFESLEDMSEISSADYKLFWIGLYGTPILWVGLLITGIMLLKFQWLVIVVIALLLSGANIYGYTKCNADAKVKVQQMVNDGMMAGAMQGAQAALGNAGLRNALFSMFGG 489
SS+ I +++C+L+LA DFWTVKNV+GRL+VGLRWWS+V EDG T+WVFESLED+ E+ + D +LFW+GLY TP W L + G++ QWL++VV+AL LSGANI GYTKC DAK K+Q V G+ + + G RN S F G
Sbjct: 74 SSNFIFLFVLCVLLLAADFWTVKNVTGRLLVGLRWWSHVSEDGKTDWVFESLEDLGEVHAGDARLFWLGLYATPAAWAALFVIGLLKFNLQWLIVVVVALALSGANIIGYTKCRKDAKQKLQGFVESGVTG--------LMASEGFRNTFLSFFTG 221
BLAST of mRNA_C-linearis_contig8.15525.1 vs. uniprot
Match: A0A485KG22_9STRA (Golgi apparatus membrane protein TVP23 homolog n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KG22_9STRA) HSP 1 Score: 169 bits (428), Expect = 1.900e-49 Identity = 82/150 (54.67%), Postives = 111/150 (74.00%), Query Frame = 1
Query: 1 MGGFKFVSSSSILTYIICILMLAFDFWTVKNVSGRLMVGLRWWSNVKEDGTTEWVFESLEDMSEISSADYKLFWIGLYGTPILWVGLLITGIMLLKFQWLVIVVIALLLSGANIYGYTKCNADAKVKVQQMVNDGMMAGAMQGAQAALGN 450
+GG +S S + ++IC+L+LAFDFWTVKNVSGRL+VGLRWW+ + EDG+ EWVFESLEDMSEI D K+FW GLYG P++WV L+ ++ L +W +I ++AL LSGAN+ GYTKC+ DAK K+Q M M AGA++ ++ G+
Sbjct: 79 LGGI--MSDSFVFVFVICVLLLAFDFWTVKNVSGRLLVGLRWWNRINEDGSNEWVFESLEDMSEIDPLDAKIFWTGLYGAPVVWVLFLLIAVLKLNVEWALIAIVALTLSGANVVGYTKCSKDAKNKMQSM----MTAGALEALNSSAGS 222
BLAST of mRNA_C-linearis_contig8.15525.1 vs. uniprot
Match: A0A812Z9G7_SYMMI (Golgi apparatus membrane protein TVP23 homolog n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812Z9G7_SYMMI) HSP 1 Score: 166 bits (419), Expect = 4.920e-49 Identity = 82/152 (53.95%), Postives = 116/152 (76.32%), Query Frame = 1
Query: 22 SSSSILTYIICILMLAFDFWTVKNVSGRLMVGLRWWSNVKEDGTTEWVFESLEDMSEISSADYKLFWIGLYGTPILWVGLLITGIMLLKFQWLVIVVIALLLSGANIYGYTKCNADAKVKVQQMVNDGMMAGAMQGAQAALGNAGLRNALFS 477
+S+ I+ +++CI++LAFDFWTVKNV+GRL+VGLRWWS V+EDG EW+FESLEDM+E+S+ D +LFW LY TP+ W LL+ G++ LK ++L IV+ AL+LS ANI GY KC+ A+ KV+ ++ +G+ QG+ AAL N+ LRN + S
Sbjct: 7 TSNFIVVFVVCIILLAFDFWTVKNVTGRLLVGLRWWSYVREDGGNEWIFESLEDMAEVSAFDSRLFWGALYVTPVFWTLLLLMGLLRLKIEYLPIVIAALMLSSANIMGYIKCSNSAQAKVRNLMENGIK----QGSMAALENSSLRNWILS 154
BLAST of mRNA_C-linearis_contig8.15525.1 vs. uniprot
Match: A0A024TJ00_9STRA (Golgi apparatus membrane protein TVP23 homolog n=9 Tax=Aphanomyces TaxID=100860 RepID=A0A024TJ00_9STRA) HSP 1 Score: 165 bits (418), Expect = 7.470e-48 Identity = 80/149 (53.69%), Postives = 108/149 (72.48%), Query Frame = 1
Query: 1 MGGFKFVSSSSILTYIICILMLAFDFWTVKNVSGRLMVGLRWWSNVKEDGTTEWVFESLEDMSEISSADYKLFWIGLYGTPILWVGLLITGIMLLKFQWLVIVVIALLLSGANIYGYTKCNADAKVKVQQMVNDGMMAGAMQGAQAALG 447
+GGF VS+S + ++IC+L+LAFDFWTVKNVSGRL+VGLRWW+ + EDG+ +WVFESLEDMSEI D K+FW LYG P+ W L+ ++ L +W +I ++AL LSGAN+ GYTKC+ DAK K+ M M AGA++ ++ G
Sbjct: 82 LGGF--VSNSFVFIFVICVLLLAFDFWTVKNVSGRLLVGLRWWNRINEDGSNDWVFESLEDMSEIDPLDAKIFWTALYGAPVAWALFLLVAVLKLNVEWALIAIVALTLSGANVVGYTKCSKDAKSKMHSM----MTAGALEALNSSAG 224
BLAST of mRNA_C-linearis_contig8.15525.1 vs. uniprot
Match: A0A6G0W9V7_9STRA (Golgi apparatus membrane protein TVP23 homolog n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W9V7_9STRA) HSP 1 Score: 164 bits (416), Expect = 1.130e-47 Identity = 74/137 (54.01%), Postives = 103/137 (75.18%), Query Frame = 1
Query: 1 MGGFKFVSSSSILTYIICILMLAFDFWTVKNVSGRLMVGLRWWSNVKEDGTTEWVFESLEDMSEISSADYKLFWIGLYGTPILWVGLLITGIMLLKFQWLVIVVIALLLSGANIYGYTKCNADAKVKVQQMVNDGMM 411
+GGF VS+S + ++IC+L+LAFDFWTVKN+SGRL+VGLRWW+ + EDG+ EW+FESLEDMSEI D ++FW LYG P++W L+ I+ +W +I ++AL LSGAN+ GYTKC+ DAK K++ M+ G +
Sbjct: 76 LGGF--VSNSFVFIFVICVLLLAFDFWTVKNISGRLLVGLRWWNRINEDGSNEWIFESLEDMSEIDPLDARIFWTSLYGAPVVWAFFLLIAILKFNVEWALIAIVALTLSGANVVGYTKCSKDAKDKMRSMMTSGAL 210 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15525.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig8.15525.1 >prot_C-linearis_contig8.15525.1 ID=prot_C-linearis_contig8.15525.1|Name=mRNA_C-linearis_contig8.15525.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=183bp MGGFKFVSSSSILTYIICILMLAFDFWTVKNVSGRLMVGLRWWSNVKEDGback to top mRNA from alignment at C-linearis_contig8:1047771..1049249- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig8.15525.1 ID=mRNA_C-linearis_contig8.15525.1|Name=mRNA_C-linearis_contig8.15525.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1479bp|location=Sequence derived from alignment at C-linearis_contig8:1047771..1049249- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig8:1047771..1049249- >mRNA_C-linearis_contig8.15525.1 ID=mRNA_C-linearis_contig8.15525.1|Name=mRNA_C-linearis_contig8.15525.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1098bp|location=Sequence derived from alignment at C-linearis_contig8:1047771..1049249- (Chordaria linearis ClinC8C monoicous)back to top |