prot_C-linearis_contig8.15511.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig8.15511.1
Unique Nameprot_C-linearis_contig8.15511.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length72
Homology
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BLAST of mRNA_C-linearis_contig8.15511.1 vs. uniprot
Match: A0A6H5JN60_9PHAE (SWIM-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN60_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 7.180e-10
Identity = 32/72 (44.44%), Postives = 41/72 (56.94%), Query Frame = 0 
Query:    1 TRQKPVFDTVQDIVMQSASKLAAAAALKKLDLTATFTPFVMKAFNAEMEWAKTCDVSPTGNGGYMVFPNNNR 72
            TR K   D   D   Q   KLA+ A ++  +  A  TP  +K  +AEMEWAKTCDVS  G   ++VFP+ NR
Sbjct:   69 TRSKAPLDFFMDTAFQGLDKLASQANIQINNPAAVHTPHAVKVLHAEMEWAKTCDVSNVGGDTFVVFPSGNR 140
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15511.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JN60_9PHAE7.180e-1044.44SWIM-type domain-containing protein n=2 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:917255..918176 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15511.1mRNA_C-linearis_contig8.15511.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig8 917253..918176 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig8.15511.1 ID=prot_C-linearis_contig8.15511.1|Name=mRNA_C-linearis_contig8.15511.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=72bp
TRQKPVFDTVQDIVMQSASKLAAAAALKKLDLTATFTPFVMKAFNAEMEW
AKTCDVSPTGNGGYMVFPNNNR
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