mRNA_C-linearis_contig8.15511.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15511.1
Unique NamemRNA_C-linearis_contig8.15511.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig8.15511.1 vs. uniprot
Match: A0A6H5JN60_9PHAE (SWIM-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN60_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 7.180e-10
Identity = 32/72 (44.44%), Postives = 41/72 (56.94%), Query Frame = 1 
Query:    1 TRQKPVFDTVQDIVMQSASKLAAAAALKKLDLTATFTPFVMKAFNAEMEWAKTCDVSPTGNGGYMVFPNNNR 216
            TR K   D   D   Q   KLA+ A ++  +  A  TP  +K  +AEMEWAKTCDVS  G   ++VFP+ NR
Sbjct:   69 TRSKAPLDFFMDTAFQGLDKLASQANIQINNPAAVHTPHAVKVLHAEMEWAKTCDVSNVGGDTFVVFPSGNR 140
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15511.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JN60_9PHAE7.180e-1044.44SWIM-type domain-containing protein n=2 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:917253..918176 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size218
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930501.4647875-CDS-C-linearis_contig8:917254..9173121622930501.4647875-CDS-C-linearis_contig8:917254..917312Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 917255..917312 -
1690881102.3018115-CDS-C-linearis_contig8:917254..9173121690881102.3018115-CDS-C-linearis_contig8:917254..917312Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 917255..917312 -
1622930501.4781716-CDS-C-linearis_contig8:918018..9181761622930501.4781716-CDS-C-linearis_contig8:918018..918176Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 918019..918176 -
1690881102.3114734-CDS-C-linearis_contig8:918018..9181761690881102.3114734-CDS-C-linearis_contig8:918018..918176Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 918019..918176 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15511.1prot_C-linearis_contig8.15511.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 917255..918176 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15511.1

>prot_C-linearis_contig8.15511.1 ID=prot_C-linearis_contig8.15511.1|Name=mRNA_C-linearis_contig8.15511.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=72bp
TRQKPVFDTVQDIVMQSASKLAAAAALKKLDLTATFTPFVMKAFNAEMEW
AKTCDVSPTGNGGYMVFPNNNR
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mRNA from alignment at C-linearis_contig8:917253..918176-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15511.1 ID=mRNA_C-linearis_contig8.15511.1|Name=mRNA_C-linearis_contig8.15511.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=924bp|location=Sequence derived from alignment at C-linearis_contig8:917253..918176- (Chordaria linearis ClinC8C monoicous)
ACAAGGCAGAAGCCGGTGTTCGATACAGTCCAGGACATCGTCATGCAGTC
GGCAAGCAAGCTCGCAGCAGCCGCAGCCTTGAAGAAACTCGACCTGACGG
CCACGTTCACCCCTTTCGTGATGAAGGCCTTCAACGCCGAAATGGAATGG
GCGAAAACGTGAGTACATTTTCACCTCCAGATTTTGTTAAACGCGTAGAT
GAAGCTGCGCTAGGTGGTGTGTGTTCGATAATGTACCGTAATATCGTCAG
GGACCCCCCCCCCAAAAAAAAACGAAATAACCACCATAAAAACGCTGAAT
ATTTCCGGGGGAATCCCCCCAACTGTAGGGATGTCCCCGGGGCCATCTAC
ATGTGTCGCCGTGGATAAATGCATGCAGCTCGGTTCGCGTGTTAACGGAA
TTTTATCGGGAAAAGGTTCGAGTACTCTCGTGGTGGTTTCCCTTTCCGCT
TTTTTTTGTTGTCGGAGGAGGTGTCCTTGCCGCCACCCAAGGCAGGGTGT
AAGCTCCCCCAACTATTGGTCACCTTTACTTCTTATATTGCCTTTCGTCG
ATCATGTTTAGACCCGACATCGTGGAGCTGCTGATGTGAGGTGTGACCCT
CATGAGGGTGGTGTTTGTGTGTTCTTCTATACGGAGTGTATCTCTCCGGG
CATCTTGTCCCCGGGTGTTTTCCGTTTTTTATAGATGTCGCCCTTACCGT
AGAGATGTCCCCGGGGATATCGTTGACGGCAATAATGGTAGGGGATGTCC
CCGGGGCACATCTATGAAGATATGTCGGTACCCAGGCGACCAAGCAACAC
CAAAGCTTGGTAACACACCCACTCATTCCCACCCCGTGCGTCGTCCGCGC
GTGTGCTGCTTTAGGTGCGACGTCAGCCCTACCGGCAACGGAGGGTACAT
GGTGTTCCCCAACAACAACCGCCG
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Coding sequence (CDS) from alignment at C-linearis_contig8:917253..918176-

>mRNA_C-linearis_contig8.15511.1 ID=mRNA_C-linearis_contig8.15511.1|Name=mRNA_C-linearis_contig8.15511.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at C-linearis_contig8:917253..918176- (Chordaria linearis ClinC8C monoicous)
ACAAGGCAGAAGCCGGTGTTCGATACAGTCCAGGACATCGTCATGCAGTC
GGCAAGCAAGCTCGCAGCAGCCGCAGCCTTGAAGAAACTCGACCTGACGG
CCACGTTCACCCCTTTCGTGATGAAGGCCTTCAACGCCGAAATGGAATGG
GCGAAAACACAAGGCAGAAGCCGGTGTTCGATACAGTCCAGGACATCGTC
ATGCAGTCGGCAAGCAAGCTCGCAGCAGCCGCAGCCTTGAAGAAACTCGA
CCTGACGGCCACGTTCACCCCTTTCGTGATGAAGGCCTTCAACGCCGAAA
TGGAATGGGCGAAAACGTGCGACGTCAGCCCTACCGGCAACGGAGGGTAC
ATGGTGTTCCCCAACAACAACCGCGTGCGACGTCAGCCCTACCGGCAACG
GAGGGTACATGGTGTTCCCCAACAACAACCGC
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