prot_C-linearis_contig76.15230.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig76.15230.1
Unique Nameprot_C-linearis_contig76.15230.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length833
Homology
BLAST of mRNA_C-linearis_contig76.15230.1 vs. uniprot
Match: D7FQS3_ECTSI (F-box, zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQS3_ECTSI)

HSP 1 Score: 773 bits (1995), Expect = 7.690e-270
Identity = 453/707 (64.07%), Postives = 509/707 (71.99%), Query Frame = 0
Query:  133 ETKGPFLALVSGVQNVLDACPAMPGVALESSIQDCLRRPSPGAAAWSLGAARTFVGGVLSLVSTWRSPRSLSLCQAVVSVLVRFVAEKGCVLADDSPVLDVEEKEAH---RCSLCVSCAAG---NDIVVDAQTAPVSQPLCCNAQEKRDLVLEGMLRWAVDIHFRQCSRVLQASLSRAVCDGIRQALDAAELSSARLSPPCFALGCRLLLSFVGGLAGDGGAQAASFLQERCGTELRLFLARARFRPLS---RGRTCTGSRAATGVP-ARRLPELPVLDAYVGHLCLCRHVSDALASRHLDWLARQALVVLRLLDGDXXXXXXXXEPAGATKSAETFGALVSLSHALALLLTRPKRGPGVGPVGGVTEVSGNLLEIVFDSDPRPLSGVPPLLAEAAIDALKAAGHLQLAQPDEFLRPPLAPTRPEGSRRRVPNVVGREL-----PGAANASSDGASFADGIEFRRASVAFRNSWSLAKAGLDPHLPVLE--SRKRRLDSDGDSGXXXXXXXX-----DGDLDGG-SVVGSGWGRVPDEVALRVFSFLTPKRVCRLACVDRAWKELLMVPRVWRPFFEARWPVTVIESEEDVAGVTDRLLLEGLGSEERAKRKNKRRRTRDGVVRWRLADDT-GPAQP--SREWMVLYRDRHRAERAARGRVAAKTKFGWLVCPFLGCVCSLKSEFAVKRHVQIHKRPVGKRRVVKPK 813
            +T GPFLALVSG+Q  LDACPAMP + LE+SI+DCLRRPSPGAA W+ G+ R FV GVLSLVS+  SPRSL  CQAVVSVLVRFVA  GC   DDS  LD E +E     R S C+SC+     N    DA     ++P CCNAQEKRDLVLE MLRWAVD+HFRQCSR+LQAS++RAVC G+RQAL AAELS  + SPP F LGCRLLLSFVGGLAGDGGAQ A FL+ERCG E+R FL R R+RP S   RGR    +  ATG   ARR PELP+LDAYVGHLCLCRHVSD L++ HL WLARQAL VLR+LD                +++     L SLSHALALLLTRPKRG     +  V E  GNLLEIVFDSDPRPLS VP  LAEAAID LK AGHLQLA+ DE LR       P GSRR  PN  GR       P AA  + +GASFA GI+F+RAS+AFRNSWSLA AG+D  LP      R RR D  GDS XXXXXXXX     DGD+DG  ++ G+GWGRVPDEV LRVFSF+TPKRVCRLACVDRAW+ELL V  VWRPFFEARWP+T I S+ D+ GV+DRLL EGLGS  R   K +RR  + GVV WR ++DT G  QP   R+WM LYRDRHRAERAARGR AAKT+F WLVCPFLGCV SLKSEFAVKRHV+ HKRP  KR + K K
Sbjct:   10 QTNGPFLALVSGLQGALDACPAMPTLTLETSIEDCLRRPSPGAAVWAFGSTRMFVSGVLSLVSS--SPRSL--CQAVVSVLVRFVAGDGCDTLDDSLALDAEGEETQDRRRRSRCLSCSTALSDNAAGTDASETERARPQCCNAQEKRDLVLESMLRWAVDVHFRQCSRLLQASVNRAVCHGVRQALVAAELSRRQASPPSFPLGCRLLLSFVGGLAGDGGAQIAGFLRERCGAEMRRFLTRGRWRPPSGTARGRRHADAWTATGRGVARRQPELPMLDAYVGHLCLCRHVSDPLSATHLVWLARQALAVLRMLDMPEEGAPGTTAAPERRQNSNFEAVLASLSHALALLLTRPKRGGVCSSI--VPETVGNLLEIVFDSDPRPLSCVPRPLAEAAIDVLKEAGHLQLARSDELLR------LPWGSRRGEPNAAGRREESKLGPVAATVTEEGASFASGIDFQRASLAFRNSWSLAAAGVDMQLPSTNHSGRSRRGDGGGDSXXXXXXXXXXXXSADGDVDGARAIAGNGWGRVPDEVTLRVFSFMTPKRVCRLACVDRAWRELLTVSGVWRPFFEARWPLTAIGSDLDLVGVSDRLLAEGLGSA-RKNAKRRRRHGKIGVVHWRTSEDTSGQQQPLLERDWMALYRDRHRAERAARGRFAAKTEFPWLVCPFLGCVSSLKSEFAVKRHVRTHKRPREKRLMGKKK 703          
BLAST of mRNA_C-linearis_contig76.15230.1 vs. uniprot
Match: A0A6H5JX00_9PHAE (F-box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX00_9PHAE)

HSP 1 Score: 549 bits (1414), Expect = 3.750e-184
Identity = 330/539 (61.22%), Postives = 376/539 (69.76%), Query Frame = 0
Query:  226 DDSPVLDVEEKEAH---RCSLCVSCAAG---NDIVVDAQTAPVSQPLCCNAQEKRDLVLEGMLRWAVDIHFRQCSRVLQASLSRAVCDGIRQALDAAELSSARLSPPCFALGCRLLLSFVGGLAGDGGAQAASFLQERCGTELRLFLARARFRPLS---RGR----TCTGSRAATGVPARRLPELPVLDAYVGHLCLCRHVSDALASRHLDWLARQALVVLRLLDGDXXXXXXXXEPAGATKSAETFGALVSLSHALALLLTRPKRGPGVGPVGGVTEVSGNLLEIVFDSDPRPLSGVPPLLAEAAIDALKAAGHLQLAQPDEFLRPPLAPTRPEGSRRRVPNVVGREL-----PGAANASSDGASFADGIEFRRASVAFRNSWSLAKAGLDPHLPVLE--SRKRRLDSDGDSGXXXXXXXX-----DGDLDG-GSVVGSGWGRVPDEVALRVFSFLTPKRVCRLACVDRAWKELLMVPRVWRPFFEARWPVTVIESEEDVAGVTDRLLLEGLGSEERAKRKNKRRRTRDGVVRWRLAD 738
            DDS  L+ E +EA    R S C+SC+A    N    DA     ++P CC+AQEKRD+VLE MLRWAVD+HFRQCSR+LQAS++RAVC G+RQAL AAELS  + SPP F  GCRLLLSFVGGLAGDGGAQ A FL+ERCG ELR FLAR R+RP S   RGR    TCT   A  G  A R  E P+LDAYVGHLCLCRHVSD LA+ HL WLARQAL VLR+LD            A   +S+     L SLSHALALLLTRPKRG        V E +GNLLEIVFDSD RPLS VP  LAEAAID LK AGH+QLA+ DE LRPP       GSRR  PN  GR       P AA  + +GASFA GI+FRRAS+AFR++WSLA AG+D  LP      R RR D  GDS XXXXXXXX     DGD+DG G++ G+GWGRVPDEV +RV SF+TPKRVCRLACVDRAW+ELLMV  VWRPFFEARWP++ I S+ D+AGV+DRLL EGLGS  R K K +RR  + GVV WR  +
Sbjct:   33 DDSLALEAEGEEAQGTRRRSRCLSCSAALSDNPAGTDASETEGARPQCCSAQEKRDVVLESMLRWAVDVHFRQCSRLLQASVNRAVCHGVRQALVAAELSMRQASPPSFPPGCRLLLSFVGGLAGDGGAQIAGFLRERCGAELRRFLARGRWRPPSGTCRGRRHADTCT---ATGGAVAGRQAESPMLDAYVGHLCLCRHVSDPLAATHLAWLARQALTVLRMLDMPEEGAHETTAAAERRQSSNFADVLASLSHALALLLTRPKRGGLCSST--VPETAGNLLEIVFDSDARPLSCVPRPLAEAAIDVLKEAGHIQLARSDELLRPP------RGSRRGEPNAAGRRTKSKLGPVAATVTEEGASFASGIDFRRASLAFRSTWSLAAAGVDTQLPSTSRSGRSRRGDGGGDSSXXXXXXXXXXXXADGDVDGAGAIAGNGWGRVPDEVTMRVLSFMTPKRVCRLACVDRAWRELLMVSGVWRPFFEARWPLSAIGSDLDLAGVSDRLLAEGLGSA-RKKAKRRRRHGKIGVVHWRTPE 559          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig76.15230.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQS3_ECTSI7.690e-27064.07F-box, zinc finger protein n=1 Tax=Ectocarpus sili... [more]
A0A6H5JX00_9PHAE3.750e-18461.22F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001810F-box domainPROSITEPS50181FBOXcoord: 638..684
score: 9.709
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 636..759

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig76contigC-linearis_contig76:815082..820527 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig76.15230.1mRNA_C-linearis_contig76.15230.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig76 815064..821338 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig76.15230.1 ID=prot_C-linearis_contig76.15230.1|Name=mRNA_C-linearis_contig76.15230.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=833bp
MAQAEGWERLGELSRLLQAFRRMYIRREVEEDNPSLLKWRHKLVDFLKGL
LLSCEVQGAREDGAWVHFRFEGPLSKVLGHSCCDWSSLDAFGCGLMSEVL
DALSQVQSELPVSTPAIVHVLLHRMAIVRPGKETKGPFLALVSGVQNVLD
ACPAMPGVALESSIQDCLRRPSPGAAAWSLGAARTFVGGVLSLVSTWRSP
RSLSLCQAVVSVLVRFVAEKGCVLADDSPVLDVEEKEAHRCSLCVSCAAG
NDIVVDAQTAPVSQPLCCNAQEKRDLVLEGMLRWAVDIHFRQCSRVLQAS
LSRAVCDGIRQALDAAELSSARLSPPCFALGCRLLLSFVGGLAGDGGAQA
ASFLQERCGTELRLFLARARFRPLSRGRTCTGSRAATGVPARRLPELPVL
DAYVGHLCLCRHVSDALASRHLDWLARQALVVLRLLDGDGDGDGDGDEPA
GATKSAETFGALVSLSHALALLLTRPKRGPGVGPVGGVTEVSGNLLEIVF
DSDPRPLSGVPPLLAEAAIDALKAAGHLQLAQPDEFLRPPLAPTRPEGSR
RRVPNVVGRELPGAANASSDGASFADGIEFRRASVAFRNSWSLAKAGLDP
HLPVLESRKRRLDSDGDSGGDDGSDSDDGDLDGGSVVGSGWGRVPDEVAL
RVFSFLTPKRVCRLACVDRAWKELLMVPRVWRPFFEARWPVTVIESEEDV
AGVTDRLLLEGLGSEERAKRKNKRRRTRDGVVRWRLADDTGPAQPSREWM
VLYRDRHRAERAARGRVAAKTKFGWLVCPFLGCVCSLKSEFAVKRHVQIH
KRPVGKRRVVKPKPADKSGTTRSFSDTRRRPP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001810F-box_dom
IPR036047F-box-like_dom_sf