prot_C-linearis_contig75.15077.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig75.15077.1
Unique Nameprot_C-linearis_contig75.15077.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length1221
Homology
BLAST of mRNA_C-linearis_contig75.15077.1 vs. uniprot
Match: A0A6H5L2A2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2A2_9PHAE)

HSP 1 Score: 847 bits (2188), Expect = 1.790e-286
Identity = 730/1146 (63.70%), Postives = 793/1146 (69.20%), Query Frame = 0
Query:  108 RWTELLDILGHWEEHAGQLDAKTYNVALSALGKCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMEQEGSRVXXXXXXXXXXXXXXXXXXXXXXXXXXLMGIKTRGLTPXXXXXXXXXXXXXXXXXXQASECCRRGKALLRALEIMDLMLQQXXXXXXXXXXXXXXXXXXXXXXQKALSLLADIPSRGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTAAMAAADGWAAALRLLEVMKREGVLPDVNTYNAALSVISRSGREDVALALLNQMRIDGEIVARAGVFFFSSGLGCSPDVISFNTAIDACASRERWQEAVELLEVDMPGAKVKXXXXXXXXXXXXXAGPSGKWEKAYELLDTMWQDPKGARPNKRTYDLVIQACGHGGEWELGVALIDDMRDLGIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAKEWKRATEIFDEARYVHRLRPSLQIYGALLGALADGERWADVLVYLDRMVADGLVPDATATNTAVLAAAELGDGRRALSLLEGERSGRGGGCSGGSGSGGELRQRERQFVEAVRKGGGDGSGGGT-------LPRNQRL--------GQGKAVLRVDRNGEQEALLEEGGSVKLERRERKDPSEGGTLPARAGLEGQTISPGGGGAAAVRMLTRADTPSEEAEEAEEG--GVRNTTDGTEAD---RAGGRKDGDLPDGVVRGGWETATPGLLNSVLHALDEASEDVAILEAVKRGREKGVVLNLSIYRCALKACGNLGDYSQANGLLARMAEESLTPDIVHWNHALRASAACARWQEARLRLQEMEIFDTPPDEFSYSMALKACSAGLWSGDRWSDESGWGAKEECNGPLRRAQDASAEDQQEGRGDQQQRKVSQTCRGKHAIELLQEMKDKGVRLRAQSFNLAMAACLEGHRDRSAEAGDGLQKGQ-PPAAGLRLARAALSLFDRLVEAGERPTATTYALALKACARTANSRRAHSLFWAMLD--SPSRQQQXXXXXXXXXX------------------SQPQPRPEVRPWHLASAIAAFDAAGDWAGAQELWGEALRMGVSPRSPGYDAVVAAAMRAGDKAAARRLVKEALGLKLGLA 1212
            RWTE+L+ILGHWEE+AG+LDAKTYNVALSALGKCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  ME+E S V XXXXXXXXXXXXXXXXXXXXXXXXXLMGIKTRGL+ XXXXXXXXXXXXXXXXXX                         XXXXXXXXXXXXXXXXXXXXXX                                                            M A DGW AALRLLE     GVLPDVNTYNAALSV++RSGREDVALALLN+MRIDG                            DACASRE+WQEAVELLEVDMP AKVKXXXXXXXXXXXXXAGP+G WEKAY+LLD MWQDP+GA+P+K TYDLVIQACGHGGEWELGV LIDDMRDLGI XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  KEWKRATEIFDEARYVHR+RPSLQIYGALLGALA+GERWADVLVY+DRMVADG+  DA ATNTAVLAAAELGDGRRALSLLEG           G GS    +QR  +  E VR  GG+  GG         L R +R         G+G  + + +  GE EALL         RR+R   + G     R G E +           VR  TR   P  EA    +G  G +N  D    D   R GG  D  + DGV  GGWE  TPGLL SVL ALDE  ED A+LEAVKRGREKGV+LN SIYRCALKACGNLGDY QAN +L RMAEESLTPDIVHWNHALRASAACARWQE RLRL+EME   + PDEFSYSMALKACSAGLWSGD W D  GWGA+E+ +   RR    + E Q +G GD+++ KV Q CRGK+AIELLQEMK +GVRL A ++ LAMAACLEGHRDR  E   GL K + PP+A LRLA AAL LFDRLV AGE PTA  YA ALKACARTAN +RA++LFW MLD  SP    Q                            S PQPRPEVRPWHLASAIAA+DAAGDW GA++LW EALR GVSPRSPGYDA V+ A+RAGD AAAR+LV+EA GL+L LA
Sbjct:  132 RWTEVLEILGHWEENAGRLDAKTYNVALSALGKCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEMEREDSEVRXXXXXXXXXXXXXXXXXXXXXXXXXLMGIKTRGLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------------------------------------MTAVDGWGAALRLLE-----GVLPDVNTYNAALSVVARSGREDVALALLNRMRIDGXXXXXXXXXXXX----------------DACASREKWQEAVELLEVDMPAAKVKXXXXXXXXXXXXXAGPTGNWEKAYQLLDAMWQDPEGAKPSKHTYDLVIQACGHGGEWELGVTLIDDMRDLGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEWKRATEIFDEARYVHRIRPSLQIYGALLGALAEGERWADVLVYMDRMVADGVARDAAATNTAVLAAAELGDGRRALSLLEG-----------GEGS----QQRGGRQREMVRDAGGEEGGGSDNRLLWDGLQRRRRPAAVDEGDGGRGVVLGQGELEGETEALLG--------RRQRAATAAG---EKRHGEESE-----------VRARTRI-RPCPEAARERQGVLGEQNCVDEESEDGTRRTGGDSDS-VDDGV--GGWEGVTPGLLISVLRALDEQDEDSAVLEAVKRGREKGVLLNPSIYRCALKACGNLGDYDQANDILVRMAEESLTPDIVHWNHALRASAACARWQETRLRLKEMETSGSTPDEFSYSMALKACSAGLWSGDSWCDSRGWGAEEDKSS-CRRKNALNGEGQLDGSGDKKEPKVPQACRGKNAIELLQEMKQRGVRLSAHAYTLAMAACLEGHRDRHPELEAGLDKEKGPPSADLRLAEAALLLFDRLVAAGETPTADAYAHALKACARTANPQRANALFWFMLDAASPPAAVQTSSNLSSLRNGASGNYVADGQRRHSRPPSPPQPRPEVRPWHLASAIAAYDAAGDWTGAKQLWDEALRRGVSPRSPGYDAAVSVALRAGDTAAARQLVEEARGLRLELA 1167          
BLAST of mRNA_C-linearis_contig75.15077.1 vs. uniprot
Match: D7FQ90_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ90_ECTSI)

HSP 1 Score: 739 bits (1908), Expect = 2.000e-250
Identity = 502/787 (63.79%), Postives = 549/787 (69.76%), Query Frame = 0
Query:  462 MPGAKVKXXXXXXXXXXXXXAGPSGKWEKAYELLDTMWQDPKGARPNKRTYDLVIQACGHGGEWELGVALIDDMRDLGIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAKEWKRATEIFDEARYVHRLRPSLQIYGALLGALADGERWADVLVYLDRMVADGLVPDATATNTAVLAAAELGDGRRALSLLEG-----ERSGRGGGCS----GGSGSGGELRQRERQFVEAVRKGGGDGSGGGTLPRNQRLGQGKAVLRVDRNGEQEALLEEGGSVKLERRERKDPSEGGTLPARAGLEGQTISPGGGGAAAVRMLTRADTPSEEAEE-----AEEGGV-RNTTDGTEADRAGGRKDGDLPDGVVRGGWETATPGLLNSVLHALDEASEDVAILEAVKRGREKGVVLNLSIYRCALKACGNLGDYSQANGLLARMAEESLTPDIVHWNHALRASAACARWQEARLRLQEMEIFDTPPDEFSYSMALKACSAGLWSGDRWSDESGWGAKEECNGPLRRAQDASAEDQQEGRGDQQQRKVSQTCRGKHAIELLQEMKDKGVRLRAQSFNLAMAACLEGHRDRSAEAGDGLQKGQ-PPAAGLRLARAALSLFDRLVEAGERPTATTYALALKACARTANSRRAHSLFWAMLDSPSRQQQXXXXXXXXXX--------------------SQPQPRPEVRPWHLASAIAAFDAAGDWAGAQELWGEALRMGVSPRSPGYDAVVAAAMRAGDKAAARRLVKEALGLKLGLA 1212
            MP AKVK             AGP+G WEKAY+LLD MWQDP+GA+P+K TYDLVIQACGHGGEWELGV LIDDMRDLGI XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  KEWKRATEIFD+ARYVHR+RPSLQIYGALLGALA+GERWADVLVYLDRMVADG+  DA ATNTAVLAAAELGDGRRALSLLEG     +R GR  G +    G  G G + RQ         R  G D   G    R   LGQG+        GE EALLE        RR+R   + G     R G E +           VR  TR  + SE A E     A+E GV     DGT        +D D  D  V GGWE  TPGLLNSVL ALDE  ED A+LEAVKRGREKG++LN SIYRCALKACGNLGDY QAN +L RMAEESLTPDIVHWNHALRASAACARWQE RLRLQEME F + PDEFSYSMALKACSAGLWSGD W D  GWGA+E+ +   RR    S+E Q +  GD+Q+ KV Q CRGK AIELLQEMK +GVRL A ++ LAMAACLEGHRDR  E   GL K + PP+A LRLA A L LFDRLV AGE PTA  YA ALKACARTAN +RA++LFW MLD  S                                  S PQPRPEVRPWHLAS I A+DAAGDWAGA++LW EALR GVSPRSPGYDA V+AA+RAGD AAAR+LV+EA GL+L LA
Sbjct:    1 MPAAKVKPDVISFTSAIHACAGPTGNWEKAYQLLDAMWQDPEGAKPSKHTYDLVIQACGHGGEWELGVTLIDDMRDLGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEWKRATEIFDQARYVHRIRPSLQIYGALLGALAEGERWADVLVYLDRMVADGVARDAAATNTAVLAAAELGDGRRALSLLEGGEGSQQRGGRQRGVARDVVGEEGGGSDNRQLCDGLQRRRRPAGVDEGDG---IRGVVLGQGEL------EGEPEALLE--------RRQRAATAGG---EKRHGEESE-----------VRARTRIRSSSEAAGERQGVVADENGVDEEAQDGTRRTE----RDSDSVDDGVGGGWEGVTPGLLNSVLRALDEQDEDSAVLEAVKRGREKGILLNQSIYRCALKACGNLGDYQQANDILVRMAEESLTPDIVHWNHALRASAACARWQETRLRLQEMETFGSTPDEFSYSMALKACSAGLWSGDSWCDSRGWGAEEDTSSSRRRNA-LSSEGQLDSSGDKQEPKVPQACRGKSAIELLQEMKQRGVRLSAHAYTLAMAACLEGHRDRHPELEAGLDKEKGPPSADLRLAEATLLLFDRLVAAGETPTADAYAHALKACARTANPQRANALFWVMLDDASPPAAVRTSSTASSLCNGASGDHVASGQRRHSPPPSPPQPRPEVRPWHLASTIVAYDAAGDWAGAKQLWDEALRRGVSPRSPGYDAAVSAALRAGDTAAARQLVEEARGLRLELA 751          
BLAST of mRNA_C-linearis_contig75.15077.1 vs. uniprot
Match: D7FQ89_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ89_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 1.510e-18
Identity = 223/316 (70.57%), Postives = 233/316 (73.73%), Query Frame = 0
Query:  100 MMVAAKRRRWTELLDILGHWEEHAGQLDAKTYNVALSALGKCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMEQEGSRVXXXXXXXXXXXXXXXXXXXXXXXXXXLMGIKTRGLTPXXXXXXXXXXXXXXXXXXQASECCRRGKALLRALEIMDLMLQQXXXXXXXXXXXXXXXXXXXXXXQKALSLLADIPSRGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTAAMAAADGWAAALRLLEVMKREGVLPDVNTYNAALSVISRSGREDVALALLNQMRIDGE 415
            MM AA+RRRWTE+L+ILGHWEE+AG+LDAKTYNVALSALGKCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXME+EGS VXXXXXXXXXXXXXXXXXXXXXXXXXX MGIKTRGL+ XXXXXXXXXXXXXXXXXX                         XXXXXXXXXXXXXXXXXXXXXX               XXXXXXXXXXXXXXXXXXXXXX                   FTAAM A DGW A LR       EGV         ALSV++RSGREDVALALLN+MRIDGE
Sbjct:    1 MMAAARRRRWTEVLEILGHWEENAGRLDAKTYNVALSALGKCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMEREGSDVXXXXXXXXXXXXXXXXXXXXXXXXXXXMGIKTRGLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVPDAAV------------FTAAMTAVDGWGATLRXXXXXXXEGVXXXXXXXXXALSVVARSGREDVALALLNRMRIDGE 304          
BLAST of mRNA_C-linearis_contig75.15077.1 vs. uniprot
Match: A0A7S4QIT0_9DINO (Hypothetical protein (Fragment) n=2 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4QIT0_9DINO)

HSP 1 Score: 63.5 bits (153), Expect = 2.540e-6
Identity = 52/186 (27.96%), Postives = 78/186 (41.94%), Query Frame = 0
Query:  359 MAAADGWAAALRLLEVMKREGVLPDVNTYNAALSVISRSGREDVALALLNQMRIDGEIVARAGVFFFSSGLGCSPDVISFNTAIDACASRERWQEAVELLEVDMPGAKVKXXXXXXXXXXXXXAGPSGK-WEKAYELLDTM--WQDPKGARPNKRTYDLVIQACGHGG-EWELGVALIDDMRDLGI 540
            +A A  WA +LRLL +M+++G+ P V  YN         G+  + L L + MR+ G                 +PD  S + AI  C    +W+  V+LL      A  +             A   G+ W  A+EL+  M  W       P+  TY  VI +C  GG  W  G   ++D+R  G+
Sbjct:  103 LAQAAHWAQSLRLLILMRQQGLRPTVVVYNRVAKPYKAIGKWRLVLHLADDMRLRG----------------LAPDGQSVSVAISTCTQAAQWRRGVQLLGEVWRRAGAEGPENIVVCNAATDAYQQGQCWASAFELVKEMRVWLQS----PDVFTYTAVIGSCTGGGPHWHHGFWALNDLRCHGL 268          
BLAST of mRNA_C-linearis_contig75.15077.1 vs. uniprot
Match: A0A6H5L8D4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D4_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 1.170e-5
Identity = 25/53 (47.17%), Postives = 33/53 (62.26%), Query Frame = 0
Query:  485 SGKWEKAYELLDTMWQDPKGARPNKRTYDLVIQACGHGGEWELGVALIDDMRD 537
            SG+W +A ELL    +DP G  PNK  Y   + AC  G  WEL +AL+D+MR+
Sbjct:  123 SGRWSEAVELLQEAKEDPAGLDPNKYCYTAAVSACARGRNWELALALLDEMRE 175          
BLAST of mRNA_C-linearis_contig75.15077.1 vs. uniprot
Match: B5Y463_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B5Y463_PHATC)

HSP 1 Score: 58.5 bits (140), Expect = 5.240e-5
Identity = 47/184 (25.54%), Postives = 76/184 (41.30%), Query Frame = 0
Query:  358 AMAAADGWAAALRLLEVMKREGVLPDVNTYNAALSVISRSGREDVALALLNQMRIDGEIVARAGVFFFSSGLGCSPDVISFNTAIDAC--ASRERWQEAVELLEVDMPGAKVKXXXXXXXXXXXXXAGPSGKWEKAYELLDTMWQDPKGARPNKRTYDLVIQACGHGGEWELGVALIDDMRDLG 539
            A + AD W  +L+LL +       P     N+ ++   R GR D+A+ +LN+MR+                 G  PD +S+  A+ AC  A  E  + A    EV +   +V                    WE A  LL  M ++  G +P+ +T+   I AC   G+W+  + ++    D G
Sbjct:   81 ACSKADQWEESLQLLRLYGDNATSP--LALNSLIASCGRGGRPDMAIEVLNEMRV----------------YGLQPDTVSYRNAVIACNQAEHEMHRAARNHREVRLAQDEVGFAW----------------WECALSLLRRMQEE--GQQPDTQTFSSAISACESAGQWQRALRVLQSTLDDG 228          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig75.15077.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5L2A2_9PHAE1.790e-28663.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQ90_ECTSI2.000e-25063.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FQ89_ECTSI1.510e-1870.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S4QIT0_9DINO2.540e-627.96Hypothetical protein (Fragment) n=2 Tax=Alexandriu... [more]
A0A6H5L8D4_9PHAE1.170e-547.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
B5Y463_PHATC5.240e-525.54Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 869..918
e-value: 0.0027
score: 17.8
coord: 531..590
e-value: 2.5E-6
score: 27.4
coord: 370..412
e-value: 4.2E-4
score: 20.3
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 280..328
e-value: 3.1E-7
score: 30.5
coord: 198..245
e-value: 3.1E-7
score: 30.5
coord: 127..173
e-value: 5.5E-10
score: 39.3
coord: 433..482
e-value: 4.9E-8
score: 33.0
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 283..317
e-value: 3.1E-6
score: 25.0
coord: 511..544
e-value: 2.4E-5
score: 22.2
coord: 164..194
e-value: 1.3E-4
score: 19.9
coord: 130..163
e-value: 6.2E-8
score: 30.3
coord: 319..352
e-value: 9.8E-5
score: 20.3
coord: 201..235
e-value: 4.2E-4
score: 18.3
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 281..315
score: 11.433
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 245..280
score: 5.536
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 1142..1176
score: 7.125
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 199..233
score: 10.698
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 127..161
score: 13.099
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 434..469
score: 9.734
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 614..648
score: 8.517
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 470..501
score: 8.594
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 1086..1116
score: 6.621
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 543..577
score: 8.539
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 508..542
score: 10.556
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 383..417
score: 8.89
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 875..909
score: 8.747
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 316..350
score: 9.986
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 162..196
score: 11.181
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 910..944
score: 7.465
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 578..613
score: 8.057
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 361..501
e-value: 8.4E-29
score: 102.9
coord: 94..255
e-value: 2.2E-39
score: 137.7
coord: 256..360
e-value: 1.4E-27
score: 98.9
coord: 1003..1214
e-value: 1.3E-21
score: 79.3
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 502..573
e-value: 1.8E-9
score: 39.3
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 583..680
e-value: 5.3E-14
score: 53.9
coord: 831..959
e-value: 4.2E-18
score: 67.3
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 185..253
coord: 430..606
coord: 264..359
coord: 104..191
coord: 547..674
coord: 845..955
coord: 1012..1210
coord: 358..536

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig75contigC-linearis_contig75:91515..101190 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig75.15077.1mRNA_C-linearis_contig75.15077.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig75 90897..101243 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig75.15077.1 ID=prot_C-linearis_contig75.15077.1|Name=mRNA_C-linearis_contig75.15077.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=1221bp
MVNSRADLTPSSAALGSKQLAFVAAAAVRSRVRQRESALQQAPTAAARRQ
LLTATTGFHGAANGAAAIRERLTAGSVRVSSRSSNDGSGGNEVYTSRNRM
MVAAKRRRWTELLDILGHWEEHAGQLDAKTYNVALSALGKCGRWKEALAT
LDRMRAKGVPPDVYSYNSAISACGRAAKWQQALALLSEMEQEGSRVPPDL
FSYNGAINAVAKGGRWEQALDLLMGIKTRGLTPDVVSFSSAMSACDRAGE
WQASECCRRGKALLRALEIMDLMLQQNVEPNIVSYGTAISACARGGRWQK
ALSLLADIPSRGLEPNAHVYGSAIHACAVGGEPRRALALLGEMLERRVVP
DAAAFTAAMAAADGWAAALRLLEVMKREGVLPDVNTYNAALSVISRSGRE
DVALALLNQMRIDGEIVARAGVFFFSSGLGCSPDVISFNTAIDACASRER
WQEAVELLEVDMPGAKVKPDVITFTSAIHACAGPSGKWEKAYELLDTMWQ
DPKGARPNKRTYDLVIQACGHGGEWELGVALIDDMRDLGIAPDAQTFNIA
VAACARSGERLAAETLVANMWKARVTPDEFTYASLVAACGSAKEWKRATE
IFDEARYVHRLRPSLQIYGALLGALADGERWADVLVYLDRMVADGLVPDA
TATNTAVLAAAELGDGRRALSLLEGERSGRGGGCSGGSGSGGELRQRERQ
FVEAVRKGGGDGSGGGTLPRNQRLGQGKAVLRVDRNGEQEALLEEGGSVK
LERRERKDPSEGGTLPARAGLEGQTISPGGGGAAAVRMLTRADTPSEEAE
EAEEGGVRNTTDGTEADRAGGRKDGDLPDGVVRGGWETATPGLLNSVLHA
LDEASEDVAILEAVKRGREKGVVLNLSIYRCALKACGNLGDYSQANGLLA
RMAEESLTPDIVHWNHALRASAACARWQEARLRLQEMEIFDTPPDEFSYS
MALKACSAGLWSGDRWSDESGWGAKEECNGPLRRAQDASAEDQQEGRGDQ
QQRKVSQTCRGKHAIELLQEMKDKGVRLRAQSFNLAMAACLEGHRDRSAE
AGDGLQKGQPPAAGLRLARAALSLFDRLVEAGERPTATTYALALKACART
ANSRRAHSLFWAMLDSPSRQQQQQQQQQQVPPSQPQPRPEVRPWHLASAI
AAFDAAGDWAGAQELWGEALRMGVSPRSPGYDAVVAAAMRAGDKAAARRL
VKEALGLKLGLAWSEDDLRD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf