mRNA_C-linearis_contig75.15077.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig75.15077.1 vs. uniprot
Match: A0A6H5L2A2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2A2_9PHAE) HSP 1 Score: 848 bits (2190), Expect = 8.400e-284 Identity = 730/1146 (63.70%), Postives = 793/1146 (69.20%), Query Frame = 3
Query: 375 RWTELLDILGHWEEHAGQLDAKTYNVALSALGKCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMEQEGSRVXXXXXXXXXXXXXXXXXXXXXXXXXXLMGIKTRGLTPXXXXXXXXXXXXXXXXXXQASECCRRGKALLRALEIMDLMLQQXXXXXXXXXXXXXXXXXXXXXXQKALSLLADIPSRGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTAAMAAADGWAAALRLLEVMKREGVLPDVNTYNAALSVISRSGREDVALALLNQMRIDGEIVARAGVFFFSSGLGCSPDVISFNTAIDACASRERWQEAVELLEVDMPGAKVKXXXXXXXXXXXXXAGPSGKWEKAYELLDTMWQDPKGARPNKRTYDLVIQACGHGGEWELGVALIDDMRDLGIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAKEWKRATEIFDEARYVHRLRPSLQIYGALLGALADGERWADVLVYLDRMVADGLVPDATATNTAVLAAAELGDGRRALSLLEGERSGRGGGCSGGSGSGGELRQRERQFVEAVRKGGGDGSGGGT-------LPRNQRL--------GQGKAVLRVDRNGEQEALLEEGGSVKLERRERKDPSEGGTLPARAGLEGQTISPGGGGAAAVRMLTRADTPSEEAEEAEEG--GVRNTTDGTEAD---RAGGRKDGDLPDGVVRGGWETATPGLLNSVLHALDEASEDVAILEAVKRGREKGVVLNLSIYRCALKACGNLGDYSQANGLLARMAEESLTPDIVHWNHALRASAACARWQEARLRLQEMEIFDTPPDEFSYSMALKACSAGLWSGDRWSDESGWGAKEECNGPLRRAQDASAEDQQEGRGDQQQRKVSQTCRGKHAIELLQEMKDKGVRLRAQSFNLAMAACLEGHRDRSAEAGDGLQKGQ-PPAAGLRLARAALSLFDRLVEAGERPTATTYALALKACARTANSRRAHSLFWAMLD--SPSRQQQXXXXXXXXXX------------------SQPQPRPEVRPWHLASAIAAFDAAGDWAGAQELWGEALRMGVSPRSPGYDAVVAAAMRAGDKAAARRLVKEALGLKLGLA 3689
RWTE+L+ILGHWEE+AG+LDAKTYNVALSALGKCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ME+E S V XXXXXXXXXXXXXXXXXXXXXXXXXLMGIKTRGL+ XXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXX M A DGW AALRLLE GVLPDVNTYNAALSV++RSGREDVALALLN+MRIDG DACASRE+WQEAVELLEVDMP AKVKXXXXXXXXXXXXXAGP+G WEKAY+LLD MWQDP+GA+P+K TYDLVIQACGHGGEWELGV LIDDMRDLGI XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX KEWKRATEIFDEARYVHR+RPSLQIYGALLGALA+GERWADVLVY+DRMVADG+ DA ATNTAVLAAAELGDGRRALSLLEG G GS +QR + E VR GG+ GG L R +R G+G + + + GE EALL RR+R + G R G E + VR TR P EA +G G +N D D R GG D + DGV GGWE TPGLL SVL ALDE ED A+LEAVKRGREKGV+LN SIYRCALKACGNLGDY QAN +L RMAEESLTPDIVHWNHALRASAACARWQE RLRL+EME + PDEFSYSMALKACSAGLWSGD W D GWGA+E+ + RR + E Q +G GD+++ KV Q CRGK+AIELLQEMK +GVRL A ++ LAMAACLEGHRDR E GL K + PP+A LRLA AAL LFDRLV AGE PTA YA ALKACARTAN +RA++LFW MLD SP Q S PQPRPEVRPWHLASAIAA+DAAGDW GA++LW EALR GVSPRSPGYDA V+ A+RAGD AAAR+LV+EA GL+L LA
Sbjct: 132 RWTEVLEILGHWEENAGRLDAKTYNVALSALGKCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEMEREDSEVRXXXXXXXXXXXXXXXXXXXXXXXXXLMGIKTRGLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------------------------------------MTAVDGWGAALRLLE-----GVLPDVNTYNAALSVVARSGREDVALALLNRMRIDGXXXXXXXXXXXX----------------DACASREKWQEAVELLEVDMPAAKVKXXXXXXXXXXXXXAGPTGNWEKAYQLLDAMWQDPEGAKPSKHTYDLVIQACGHGGEWELGVTLIDDMRDLGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEWKRATEIFDEARYVHRIRPSLQIYGALLGALAEGERWADVLVYMDRMVADGVARDAAATNTAVLAAAELGDGRRALSLLEG-----------GEGS----QQRGGRQREMVRDAGGEEGGGSDNRLLWDGLQRRRRPAAVDEGDGGRGVVLGQGELEGETEALLG--------RRQRAATAAG---EKRHGEESE-----------VRARTRI-RPCPEAARERQGVLGEQNCVDEESEDGTRRTGGDSDS-VDDGV--GGWEGVTPGLLISVLRALDEQDEDSAVLEAVKRGREKGVLLNPSIYRCALKACGNLGDYDQANDILVRMAEESLTPDIVHWNHALRASAACARWQETRLRLKEMETSGSTPDEFSYSMALKACSAGLWSGDSWCDSRGWGAEEDKSS-CRRKNALNGEGQLDGSGDKKEPKVPQACRGKNAIELLQEMKQRGVRLSAHAYTLAMAACLEGHRDRHPELEAGLDKEKGPPSADLRLAEAALLLFDRLVAAGETPTADAYAHALKACARTANPQRANALFWFMLDAASPPAAVQTSSNLSSLRNGASGNYVADGQRRHSRPPSPPQPRPEVRPWHLASAIAAYDAAGDWTGAKQLWDEALRRGVSPRSPGYDAAVSVALRAGDTAAARQLVEEARGLRLELA 1167
BLAST of mRNA_C-linearis_contig75.15077.1 vs. uniprot
Match: D7FQ90_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ90_ECTSI) HSP 1 Score: 740 bits (1910), Expect = 5.970e-248 Identity = 502/787 (63.79%), Postives = 549/787 (69.76%), Query Frame = 3
Query: 1437 MPGAKVKXXXXXXXXXXXXXAGPSGKWEKAYELLDTMWQDPKGARPNKRTYDLVIQACGHGGEWELGVALIDDMRDLGIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAKEWKRATEIFDEARYVHRLRPSLQIYGALLGALADGERWADVLVYLDRMVADGLVPDATATNTAVLAAAELGDGRRALSLLEG-----ERSGRGGGCS----GGSGSGGELRQRERQFVEAVRKGGGDGSGGGTLPRNQRLGQGKAVLRVDRNGEQEALLEEGGSVKLERRERKDPSEGGTLPARAGLEGQTISPGGGGAAAVRMLTRADTPSEEAEE-----AEEGGV-RNTTDGTEADRAGGRKDGDLPDGVVRGGWETATPGLLNSVLHALDEASEDVAILEAVKRGREKGVVLNLSIYRCALKACGNLGDYSQANGLLARMAEESLTPDIVHWNHALRASAACARWQEARLRLQEMEIFDTPPDEFSYSMALKACSAGLWSGDRWSDESGWGAKEECNGPLRRAQDASAEDQQEGRGDQQQRKVSQTCRGKHAIELLQEMKDKGVRLRAQSFNLAMAACLEGHRDRSAEAGDGLQKGQ-PPAAGLRLARAALSLFDRLVEAGERPTATTYALALKACARTANSRRAHSLFWAMLDSPSRQQQXXXXXXXXXX--------------------SQPQPRPEVRPWHLASAIAAFDAAGDWAGAQELWGEALRMGVSPRSPGYDAVVAAAMRAGDKAAARRLVKEALGLKLGLA 3689
MP AKVK AGP+G WEKAY+LLD MWQDP+GA+P+K TYDLVIQACGHGGEWELGV LIDDMRDLGI XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX KEWKRATEIFD+ARYVHR+RPSLQIYGALLGALA+GERWADVLVYLDRMVADG+ DA ATNTAVLAAAELGDGRRALSLLEG +R GR G + G G G + RQ R G D G R LGQG+ GE EALLE RR+R + G R G E + VR TR + SE A E A+E GV DGT +D D D V GGWE TPGLLNSVL ALDE ED A+LEAVKRGREKG++LN SIYRCALKACGNLGDY QAN +L RMAEESLTPDIVHWNHALRASAACARWQE RLRLQEME F + PDEFSYSMALKACSAGLWSGD W D GWGA+E+ + RR S+E Q + GD+Q+ KV Q CRGK AIELLQEMK +GVRL A ++ LAMAACLEGHRDR E GL K + PP+A LRLA A L LFDRLV AGE PTA YA ALKACARTAN +RA++LFW MLD S S PQPRPEVRPWHLAS I A+DAAGDWAGA++LW EALR GVSPRSPGYDA V+AA+RAGD AAAR+LV+EA GL+L LA
Sbjct: 1 MPAAKVKPDVISFTSAIHACAGPTGNWEKAYQLLDAMWQDPEGAKPSKHTYDLVIQACGHGGEWELGVTLIDDMRDLGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEWKRATEIFDQARYVHRIRPSLQIYGALLGALAEGERWADVLVYLDRMVADGVARDAAATNTAVLAAAELGDGRRALSLLEGGEGSQQRGGRQRGVARDVVGEEGGGSDNRQLCDGLQRRRRPAGVDEGDG---IRGVVLGQGEL------EGEPEALLE--------RRQRAATAGG---EKRHGEESE-----------VRARTRIRSSSEAAGERQGVVADENGVDEEAQDGTRRTE----RDSDSVDDGVGGGWEGVTPGLLNSVLRALDEQDEDSAVLEAVKRGREKGILLNQSIYRCALKACGNLGDYQQANDILVRMAEESLTPDIVHWNHALRASAACARWQETRLRLQEMETFGSTPDEFSYSMALKACSAGLWSGDSWCDSRGWGAEEDTSSSRRRNA-LSSEGQLDSSGDKQEPKVPQACRGKSAIELLQEMKQRGVRLSAHAYTLAMAACLEGHRDRHPELEAGLDKEKGPPSADLRLAEATLLLFDRLVAAGETPTADAYAHALKACARTANPQRANALFWVMLDDASPPAAVRTSSTASSLCNGASGDHVASGQRRHSPPPSPPQPRPEVRPWHLASTIVAYDAAGDWAGAKQLWDEALRRGVSPRSPGYDAAVSAALRAGDTAAARQLVEEARGLRLELA 751
BLAST of mRNA_C-linearis_contig75.15077.1 vs. uniprot
Match: D7FQ89_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ89_ECTSI) HSP 1 Score: 99.0 bits (245), Expect = 1.850e-18 Identity = 223/316 (70.57%), Postives = 233/316 (73.73%), Query Frame = 3
Query: 351 MMVAAKRRRWTELLDILGHWEEHAGQLDAKTYNVALSALGKCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMEQEGSRVXXXXXXXXXXXXXXXXXXXXXXXXXXLMGIKTRGLTPXXXXXXXXXXXXXXXXXXQASECCRRGKALLRALEIMDLMLQQXXXXXXXXXXXXXXXXXXXXXXQKALSLLADIPSRGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTAAMAAADGWAAALRLLEVMKREGVLPDVNTYNAALSVISRSGREDVALALLNQMRIDGE 1298
MM AA+RRRWTE+L+ILGHWEE+AG+LDAKTYNVALSALGKCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXME+EGS VXXXXXXXXXXXXXXXXXXXXXXXXXX MGIKTRGL+ XXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXX FTAAM A DGW A LR EGV ALSV++RSGREDVALALLN+MRIDGE
Sbjct: 1 MMAAARRRRWTEVLEILGHWEENAGRLDAKTYNVALSALGKCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMEREGSDVXXXXXXXXXXXXXXXXXXXXXXXXXXXMGIKTRGLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVPDAAV------------FTAAMTAVDGWGATLRXXXXXXXEGVXXXXXXXXXALSVVARSGREDVALALLNRMRIDGE 304
BLAST of mRNA_C-linearis_contig75.15077.1 vs. uniprot
Match: A0A7S4QIT0_9DINO (Hypothetical protein (Fragment) n=2 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4QIT0_9DINO) HSP 1 Score: 63.5 bits (153), Expect = 3.130e-6 Identity = 52/186 (27.96%), Postives = 78/186 (41.94%), Query Frame = 3
Query: 1128 MAAADGWAAALRLLEVMKREGVLPDVNTYNAALSVISRSGREDVALALLNQMRIDGEIVARAGVFFFSSGLGCSPDVISFNTAIDACASRERWQEAVELLEVDMPGAKVKXXXXXXXXXXXXXAGPSGK-WEKAYELLDTM--WQDPKGARPNKRTYDLVIQACGHGG-EWELGVALIDDMRDLGI 1673
+A A WA +LRLL +M+++G+ P V YN G+ + L L + MR+ G +PD S + AI C +W+ V+LL A + A G+ W A+EL+ M W P+ TY VI +C GG W G ++D+R G+
Sbjct: 103 LAQAAHWAQSLRLLILMRQQGLRPTVVVYNRVAKPYKAIGKWRLVLHLADDMRLRG----------------LAPDGQSVSVAISTCTQAAQWRRGVQLLGEVWRRAGAEGPENIVVCNAATDAYQQGQCWASAFELVKEMRVWLQS----PDVFTYTAVIGSCTGGGPHWHHGFWALNDLRCHGL 268
BLAST of mRNA_C-linearis_contig75.15077.1 vs. uniprot
Match: A0A6H5L8D4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D4_9PHAE) HSP 1 Score: 61.2 bits (147), Expect = 1.440e-5 Identity = 25/53 (47.17%), Postives = 33/53 (62.26%), Query Frame = 3
Query: 1506 SGKWEKAYELLDTMWQDPKGARPNKRTYDLVIQACGHGGEWELGVALIDDMRD 1664
SG+W +A ELL +DP G PNK Y + AC G WEL +AL+D+MR+
Sbjct: 123 SGRWSEAVELLQEAKEDPAGLDPNKYCYTAAVSACARGRNWELALALLDEMRE 175
BLAST of mRNA_C-linearis_contig75.15077.1 vs. uniprot
Match: B5Y463_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B5Y463_PHATC) HSP 1 Score: 58.5 bits (140), Expect = 6.400e-5 Identity = 47/184 (25.54%), Postives = 76/184 (41.30%), Query Frame = 3
Query: 1125 AMAAADGWAAALRLLEVMKREGVLPDVNTYNAALSVISRSGREDVALALLNQMRIDGEIVARAGVFFFSSGLGCSPDVISFNTAIDAC--ASRERWQEAVELLEVDMPGAKVKXXXXXXXXXXXXXAGPSGKWEKAYELLDTMWQDPKGARPNKRTYDLVIQACGHGGEWELGVALIDDMRDLG 1670
A + AD W +L+LL + P N+ ++ R GR D+A+ +LN+MR+ G PD +S+ A+ AC A E + A EV + +V WE A LL M ++ G +P+ +T+ I AC G+W+ + ++ D G
Sbjct: 81 ACSKADQWEESLQLLRLYGDNATSP--LALNSLIASCGRGGRPDMAIEVLNEMRV----------------YGLQPDTVSYRNAVIACNQAEHEMHRAARNHREVRLAQDEVGFAW----------------WECALSLLRRMQEE--GQQPDTQTFSSAISACESAGQWQRALRVLQSTLDDG 228 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig75.15077.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig75.15077.1 >prot_C-linearis_contig75.15077.1 ID=prot_C-linearis_contig75.15077.1|Name=mRNA_C-linearis_contig75.15077.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=1221bp MVNSRADLTPSSAALGSKQLAFVAAAAVRSRVRQRESALQQAPTAAARRQback to top mRNA from alignment at C-linearis_contig75:90897..101243- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig75.15077.1 ID=mRNA_C-linearis_contig75.15077.1|Name=mRNA_C-linearis_contig75.15077.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=10347bp|location=Sequence derived from alignment at C-linearis_contig75:90897..101243- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig75:90897..101243- >mRNA_C-linearis_contig75.15077.1 ID=mRNA_C-linearis_contig75.15077.1|Name=mRNA_C-linearis_contig75.15077.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=7326bp|location=Sequence derived from alignment at C-linearis_contig75:90897..101243- (Chordaria linearis ClinC8C monoicous)back to top |