prot_C-linearis_contig74.15039.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig74.15039.1
Unique Nameprot_C-linearis_contig74.15039.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length179
Homology
BLAST of mRNA_C-linearis_contig74.15039.1 vs. uniprot
Match: D8LD41_ECTSI (SDH3, succinate dehydrogenase subunit 3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD41_ECTSI)

HSP 1 Score: 242 bits (617), Expect = 3.390e-79
Identity = 134/177 (75.71%), Postives = 146/177 (82.49%), Query Frame = 0
Query:    2 LSRAVQRTAVLPSMATMTSKGRPLAVAATAPASRRAFNSSSSSSSPETEMESYTARQAKTGRPVSPHVTIYDFPPAALSSIANRATGVALVVGLYGISGASLVGCDPTALMNALGSSSVGPAVKLAVSFPLVYHYFGAVRHTVWDYMPETLQTEGVAKTSYALLGASGAISVGLAAI 178
            L+RAVQRT     +A +T KGRPL  A        A + SSSSS+ + E ESYTARQA+TGRPVSPHVTIYDFPPAALSSIANR TGVALV GLYGISGA+LVGCD   LM+ALGSS VGPAVKLAVSFPLVYHY GAVRHTVWDYMPETLQT GVAKTSYALLG SGA+S+GLAA+
Sbjct:    5 LARAVQRTTTAAPLA-LTHKGRPLVAAV----GSHALSRSSSSSASDKEKESYTARQARTGRPVSPHVTIYDFPPAALSSIANRVTGVALVAGLYGISGATLVGCDAAGLMSALGSSGVGPAVKLAVSFPLVYHYLGAVRHTVWDYMPETLQTAGVAKTSYALLGVSGAVSLGLAAV 176          
BLAST of mRNA_C-linearis_contig74.15039.1 vs. uniprot
Match: A0A7S1XVJ2_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XVJ2_9STRA)

HSP 1 Score: 148 bits (373), Expect = 4.160e-42
Identity = 76/125 (60.80%), Postives = 92/125 (73.60%), Query Frame = 0
Query:   52 ESYTARQAKTGRPVSPHVTIYDFPPAALSSIANRATGVALVVGLYGISGASLVGCDPTALMNALGSSSVGPAVKLAVSFPLVYHYFGAVRHTVWDYMPETLQTEGVAKTSYALLGASGAISVGLA 176
            E Y+ARQ KTGRPVSPHVTIY FP  A+SSI+ R TG  L VGL GI   +LVG D  ALM+A+GSS++GP  K AVS+ LVYH+FGA RH VWD  PE L+ + V +TS  ++GA+G IS GLA
Sbjct:   53 EKYSARQKKTGRPVSPHVTIYAFPAVAISSISVRVTGCILSVGLGGIGALALVGVDTPALMSAVGSSAIGPLAKFAVSYSLVYHFFGAARHYVWDQSPEMLENDQVYQTSLGIMGAAGVISAGLA 177          
BLAST of mRNA_C-linearis_contig74.15039.1 vs. uniprot
Match: A0A835YMP1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMP1_9STRA)

HSP 1 Score: 144 bits (363), Expect = 6.380e-41
Identity = 69/123 (56.10%), Postives = 86/123 (69.92%), Query Frame = 0
Query:   51 MESYTARQAKTGRPVSPHVTIYDFPPAALSSIANRATGVALVVGLYGISGASLVGCDPTALMNALGSSSVGPAVKLAVSFPLVYHYFGAVRHTVWDYMPETLQTEGVAKTSYALLGASGAISV 173
            +  Y  RQ KTGRPVSPHVT Y FP  A+SSI NR TGV LV GLYGI   +LVG D   LM  LG ++V P  K+ V+FPL+YHY GA RHT+WD+ PET+    VA++SY L GA+G +++
Sbjct:   27 LSDYIERQNKTGRPVSPHVTAYRFPVVAISSITNRVTGVGLVGGLYGIGALALVGVDVQGLMAMLGETAVAPLAKMVVTFPLIYHYLGAARHTIWDFKPETVNNASVAQSSYILFGAAGGLTL 149          
BLAST of mRNA_C-linearis_contig74.15039.1 vs. uniprot
Match: A0A836CCH7_9STRA (Transmembrane subunit of succinate dehydrogenase/Fumarate reductase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCH7_9STRA)

HSP 1 Score: 135 bits (339), Expect = 1.740e-37
Identity = 69/139 (49.64%), Postives = 94/139 (67.63%), Query Frame = 0
Query:   40 SSSSSSSPETEMESYTARQAKTGRPVSPHVTIYDFPPAALSSIANRATGVALVVGLYGISGASLVGCDPTALMNALGSSSVGPAVKLAVSFPLVYHYFGAVRHTVWDYMPETLQTEGVAKTSYALLGASGAISVGLAAI 178
            S++ ++S   E  SY   Q + GRP+SPHVT Y FP AA+SSI NR TGVALV GLYGI   SLVG D   +M+ +  S +   VKL V+FPL+YHYF A RHT+WD+ PET++ + V K+S  +  A+G++S+  A +
Sbjct:    1 SAAQAASQRVESHSYDELQQRRGRPISPHVTNYRFPIAAISSITNRITGVALVGGLYGIGALSLVGVDAQHIMSVIHDSILAGPVKLVVTFPLIYHYFAAARHTIWDFYPETVENKSVEKSSLLIFAAAGSLSLAAACL 139          
BLAST of mRNA_C-linearis_contig74.15039.1 vs. uniprot
Match: A0A7S3MID7_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MID7_9STRA)

HSP 1 Score: 128 bits (322), Expect = 1.070e-34
Identity = 68/125 (54.40%), Postives = 87/125 (69.60%), Query Frame = 0
Query:   53 SYTARQAKTGRPVSPHVTIYDFPPAALSSIANRATGVALVVGLYGISGASLVGCDPTALMNALGSSSV-GPAVKLAVSFPLVYHYFGAVRHTVWDYMPETLQTEGVAKTSYALLGASGAISVGLA 176
            SY+  QAK GRP+SPHV IY FPPAAL+SI NR TG  L VG+ GI   +L G D +++M+ +G  SV G   KL+V+FPLVYHY   +RH  WD  PE L T+ V ++S+ L+G+S AISV LA
Sbjct:   30 SYSEEQAKKGRPISPHVEIYKFPPAALTSITNRVTGGLLSVGMTGIGVLALAGADVSSIMSNIGDISVVGQTAKLSVAFPLVYHYLAGIRHIAWDRNPELLHTDKVTQSSHVLIGSSVAISVVLA 154          
BLAST of mRNA_C-linearis_contig74.15039.1 vs. uniprot
Match: W7TK90_9STRA (Succinate dehydrogenase cytochrome b subunit n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TK90_9STRA)

HSP 1 Score: 126 bits (317), Expect = 1.320e-33
Identity = 67/122 (54.92%), Postives = 84/122 (68.85%), Query Frame = 0
Query:   52 ESYTARQAKTGRPVSPHVTIYDFPPAALSSIANRATGVALVVGLYGISGASLVGCDPTALMNALGSSSVGPAVKLAVSFPLVYHYFGAVRHTVWDYMPETLQTEGVAKTSYALLGASGAISV 173
            E+YT RQA+TGRPVSPHVTIY FP  AL+SI+ R TG  L VGL GIS  +L G D   LM++LG+S VG   K+   FPL++HY   +RH  WD  P  L  +GVA+ SY LLG++ AIS+
Sbjct:   46 ETYTERQARTGRPVSPHVTIYKFPITALTSISTRVTGGVLTVGLTGISLLALGGADVPMLMSSLGNSMVGVPAKVLFGFPLIFHYGSGLRHFFWDNNPNFLNNKGVAEASYILLGSTVAISL 167          
BLAST of mRNA_C-linearis_contig74.15039.1 vs. uniprot
Match: A0A7S2HYL2_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HYL2_9STRA)

HSP 1 Score: 124 bits (311), Expect = 1.180e-32
Identity = 69/137 (50.36%), Postives = 86/137 (62.77%), Query Frame = 0
Query:   42 SSSSSPETEMESYTARQAKTGRPVSPHVTIYDFPPAALSSIANRATGVALVVGLYGISGASLVGCDPTA--LMNALGSSS--VGPAVKLAVSFPLVYHYFGAVRHTVWDYMPETLQTEGVAKTSYALLGASGAISVG 174
            S  S+ E + ++Y  R AKTGRPVSPH+TIY FP  A+SSI NR TG AL  G  G+    LVG    A  LM  + +S   V  + K AV+FP ++HYFGA+RH  WDYMPE L    V K S+AL G+S  +SVG
Sbjct:   47 SKESAEEYKKQNYKERMAKTGRPVSPHLTIYHFPVGAMSSITNRVTGCALTFGAAGVGAIELVGGSGAAMGLMQDIAASGGLVAASAKFAVAFPCIFHYFGAIRHIAWDYMPEYLNNPDVEKASWALFGSSLVVSVG 183          
BLAST of mRNA_C-linearis_contig74.15039.1 vs. uniprot
Match: A0A7S1YU13_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YU13_9STRA)

HSP 1 Score: 120 bits (302), Expect = 6.420e-32
Identity = 68/131 (51.91%), Postives = 82/131 (62.60%), Query Frame = 0
Query:   48 ETEMESYTARQAKTGRPVSPHVTIYDFPPAALSSIANRATGVALVVGLYGISGASLVGCDPTA--LMNALGSSS--VGPAVKLAVSFPLVYHYFGAVRHTVWDYMPETLQTEGVAKTSYALLGASGAISVG 174
            E + ++Y+ R A+TGRPVSPH+TIY FP  ALSSI NR TGVAL  G  G+    L+G    A  L+  +GSS   VG   K AV+FP VYHY GA+RH  WD  PE L+   V K S AL G+S  IS G
Sbjct:    3 EYKKQNYSERMARTGRPVSPHLTIYSFPVGALSSITNRVTGVALTFGAAGVGAIELLGGSGAAAGLLQDIGSSGALVGCTAKFAVAFPCVYHYIGAIRHLAWDNRPELLENTDVEKASIALFGSSLLISAG 133          
BLAST of mRNA_C-linearis_contig74.15039.1 vs. uniprot
Match: A0A1Z5JV10_FISSO (Succinate dehydrogenase (Ubiquinone) cytochrome b560 subunit n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JV10_FISSO)

HSP 1 Score: 122 bits (305), Expect = 6.740e-32
Identity = 67/123 (54.47%), Postives = 80/123 (65.04%), Query Frame = 0
Query:   54 YTARQAKTGRPVSPHVTIYDFPPAALSSIANRATGVALVVGLYGISGASLVGCDPTAL--MNALGSSS--VGPAVKLAVSFPLVYHYFGAVRHTVWDYMPETLQTEGVAKTSYALLGASGAIS 172
            Y+ R  +TGRPVSPHVT+Y FP  ALSSI NR TG AL VG  G+    LVG   T+L  M  +GS    V  A K  VSFP+VYHYF A+RH +WD  PE L+ + V ++SY L GAS AIS
Sbjct:   47 YSKRMKETGRPVSPHVTVYAFPTVALSSITNRVTGCALSVGCAGLGLVELVGGTGTSLSLMQTIGSQGFVVAAAAKFTVSFPIVYHYFAAIRHFMWDAKPEMLENQAVQQSSYYLFGASAAIS 169          
BLAST of mRNA_C-linearis_contig74.15039.1 vs. uniprot
Match: A0A8J6C331_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C331_DIALT)

HSP 1 Score: 121 bits (303), Expect = 7.430e-32
Identity = 66/129 (51.16%), Postives = 83/129 (64.34%), Query Frame = 0
Query:   52 ESYTARQAKTGRPVSPHVTIYDFPPAALSSIANRATGVALVVGLYGISGASLVGCDPTALMNA--LGSSSVGPAVKLAVSFPLVYHYFGAVRHTVWDYMPETLQTEGVAKTSYALLGASGAISVGLAAI 178
            ESYT R  KTGRPVSPHVTIY FP AALSSI  R TGV L VG   I  ASL G D  AL+++  L + ++ P  K+A+++PL YH+  A+RH  WD+    L  + V  TS AL   +G +S+G AAI
Sbjct:   26 ESYTERMDKTGRPVSPHVTIYKFPAAALSSITTRITGVMLTVGTSAIGAASLAGADVPALVSSCQLAAPALVPVAKVAITYPLTYHWLSAMRHAYWDWTASGLHIKTVRTTSLALFAGAGLLSLGFAAI 154          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig74.15039.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LD41_ECTSI3.390e-7975.71SDH3, succinate dehydrogenase subunit 3 n=2 Tax=Ec... [more]
A0A7S1XVJ2_9STRA4.160e-4260.80Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A835YMP1_9STRA6.380e-4156.10Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CCH7_9STRA1.740e-3749.64Transmembrane subunit of succinate dehydrogenase/F... [more]
A0A7S3MID7_9STRA1.070e-3454.40Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
W7TK90_9STRA1.320e-3354.92Succinate dehydrogenase cytochrome b subunit n=2 T... [more]
A0A7S2HYL2_9STRA1.180e-3250.36Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S1YU13_9STRA6.420e-3251.91Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A1Z5JV10_FISSO6.740e-3254.47Succinate dehydrogenase (Ubiquinone) cytochrome b5... [more]
A0A8J6C331_DIALT7.430e-3251.16Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR034804Fumarate reductase/succinate dehydrogenase, transmembrane subunitGENE3D1.20.1300.10coord: 45..178
e-value: 9.4E-30
score: 105.6
IPR034804Fumarate reductase/succinate dehydrogenase, transmembrane subunitSUPERFAMILY81343Fumarate reductase respiratory complex transmembrane subunitscoord: 59..176
IPR014314Succinate dehydrogenase, cytochrome b556 subunitTIGRFAMTIGR02970TIGR02970coord: 63..174
e-value: 3.7E-15
score: 54.2
IPR014314Succinate dehydrogenase, cytochrome b556 subunitPIRSFPIRSF000178SDH_cyt_b560coord: 12..178
e-value: 3.2E-26
score: 90.0
IPR000701Succinate dehydrogenase/fumarate reductase type B, transmembrane subunitPFAMPF01127Sdh_cytcoord: 62..172
e-value: 9.3E-15
score: 54.7
NoneNo IPR availablePANTHERPTHR10978SUCCINATE DEHYDROGENASE CYTOCHROME B560 SUBUNITcoord: 27..177
NoneNo IPR availablePANTHERPTHR10978:SF5SUCCINATE DEHYDROGENASE CYTOCHROME B560 SUBUNIT, MITOCHONDRIALcoord: 27..177

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig74contigC-linearis_contig74:656036..658669 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig74.15039.1mRNA_C-linearis_contig74.15039.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig74 655422..658854 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig74.15039.1 ID=prot_C-linearis_contig74.15039.1|Name=mRNA_C-linearis_contig74.15039.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=179bp
MLSRAVQRTAVLPSMATMTSKGRPLAVAATAPASRRAFNSSSSSSSPETE
MESYTARQAKTGRPVSPHVTIYDFPPAALSSIANRATGVALVVGLYGISG
ASLVGCDPTALMNALGSSSVGPAVKLAVSFPLVYHYFGAVRHTVWDYMPE
TLQTEGVAKTSYALLGASGAISVGLAAI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR034804SQR/QFR_C/D
IPR014314Succ_DH_cytb556
IPR000701SuccDH_FuR_B_TM-su