prot_C-linearis_contig73.14937.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_C-linearis_contig73.14937.1
Unique Name	prot_C-linearis_contig73.14937.1
Type	polypeptide
Organism	Chordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length	271

Homology

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BLAST of mRNA_C-linearis_contig73.14937.1 vs. uniprot
Match: A0A6H5JGP1_9PHAE (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGP1_9PHAE)

HSP 1 Score: 332 bits (851), Expect = 2.470e-112
Identity = 176/196 (89.80%), Postives = 177/196 (90.31%), Query Frame = 0

Query:   29 MTGTMSAGLRTPGATAALGREARTYRRLSTAKSGAASTVMMPIGVPKVAYRVPGAPNADWVDIYNRLYRERIIFLGQEIDDELANQIIGVLLYLDSEDSTKPIYLYVNCPGGSVIAGLALFDTMQHIRSEVVTINVGLAASMASFILAAGAKVCARVCNSRRILTQGKRMALPHSRVMIHQPMGGAQGQAEDIKVE 224
            MTGTMS GLRTPG T+ LGREARTYRRLST KSGAASTVMMPIGVPKVAYRVPGAP ADWVDIYNRLYRERIIFLGQEIDDELANQIIGVLLYLDSEDSTKPIYLYVNCPGGSVIAGLALFDTMQHIRSEVVTINVGLAASMASFILAAGAK              GKRMALPHSRVMIHQPMGGAQGQAEDIKVE
Sbjct:    1 MTGTMSPGLRTPGTTSVLGREARTYRRLSTTKSGAASTVMMPIGVPKVAYRVPGAPTADWVDIYNRLYRERIIFLGQEIDDELANQIIGVLLYLDSEDSTKPIYLYVNCPGGSVIAGLALFDTMQHIRSEVVTINVGLAASMASFILAAGAK--------------GKRMALPHSRVMIHQPMGGAQGQAEDIKVE 182

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BLAST of mRNA_C-linearis_contig73.14937.1 vs. uniprot
Match: D7FX14_ECTSI (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX14_ECTSI)

HSP 1 Score: 330 bits (845), Expect = 1.950e-111
Identity = 175/181 (96.69%), Postives = 176/181 (97.24%), Query Frame = 0

Query:    1 MVRAFCAVVGALLAVGQATAFFGSPSAFMTGTMSAGLRTPGATAALGREARTYRRLSTAKSGAASTVMMPIGVPKVAYRVPGAPNADWVDIYNRLYRERIIFLGQEIDDELANQIIGVLLYLDSEDSTKPIYLYVNCPGGSVIAGLALFDTMQHIRSEVVTINVGLAASMASFILAAGAKV 181
            M R FCAVVGALL VGQATAFFGSPSAFMTGTMS GLRTPGAT+ALGREARTYRRLSTAKSGAASTVMMPIGVPKVAYRVPGAP ADWVDIYNRLYRERIIFLGQEIDDELANQIIGVLLYLDSEDSTKPIYLYVNCPGGSVIAGLALFDTMQHIRSEVVTINVGLAASMASFILAAGAKV
Sbjct:    1 MARGFCAVVGALL-VGQATAFFGSPSAFMTGTMSPGLRTPGATSALGREARTYRRLSTAKSGAASTVMMPIGVPKVAYRVPGAPTADWVDIYNRLYRERIIFLGQEIDDELANQIIGVLLYLDSEDSTKPIYLYVNCPGGSVIAGLALFDTMQHIRSEVVTINVGLAASMASFILAAGAKV 180

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BLAST of mRNA_C-linearis_contig73.14937.1 vs. uniprot
Match: A0A835Z885_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z885_9STRA)

HSP 1 Score: 292 bits (748), Expect = 2.500e-96
Identity = 153/202 (75.74%), Postives = 172/202 (85.15%), Query Frame = 0

Query:   23 GSPSAFMTGTMSAGLRTPGATAALGREARTYRRLSTAKSGAASTVMMPIGVPKVAYRVPGAPNADWVDIYNRLYRERIIFLGQEIDDELANQIIGVLLYLDSEDSTKPIYLYVNCPGGSVIAGLALFDTMQHIRSEVVTINVGLAASMASFILAAGAKVCARVCNSRRILTQGKRMALPHSRVMIHQPMGGAQGQAEDIKVE 224
            G+ S +++G+MSAGLR P   ++ G    +Y+R     SGAASTVMMPIGVPKVAYRVPGAP+ADWVDIYNRLYRERIIFLGQEIDDELANQIIGV+LYLDSEDSTKPIY+YVNCPGGSVIAGLA++DTMQHI+SEV+TIN+G+AASMASF+LAAGAK              GKRMALPHSRVMIHQPMGGAQGQAEDIKVE
Sbjct:   24 GAHSTWLSGSMSAGLRMPAVPSSTGLSKASYQR-----SGAASTVMMPIGVPKVAYRVPGAPSADWVDIYNRLYRERIIFLGQEIDDELANQIIGVMLYLDSEDSTKPIYMYVNCPGGSVIAGLAIYDTMQHIKSEVITINMGMAASMASFLLAAGAK--------------GKRMALPHSRVMIHQPMGGAQGQAEDIKVE 206

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BLAST of mRNA_C-linearis_contig73.14937.1 vs. uniprot
Match: A0A0G4F8U0_VITBC (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F8U0_VITBC)

HSP 1 Score: 267 bits (682), Expect = 9.400e-86
Identity = 134/170 (78.82%), Postives = 146/170 (85.88%), Query Frame = 0

Query:   55 RLSTAKSGAASTVMMPIGVPKVAYRVPGAPNADWVDIYNRLYRERIIFLGQEIDDELANQIIGVLLYLDSEDSTKPIYLYVNCPGGSVIAGLALFDTMQHIRSEVVTINVGLAASMASFILAAGAKVCARVCNSRRILTQGKRMALPHSRVMIHQPMGGAQGQAEDIKVE 224
            R   A SG  S  MMPIGVPKVAYR+PG+PNADW+DIYNRLYRERIIFLGQEIDDE ANQIIGV+LYLDSEDSTKPIY+Y+NCPGGSVIAGLA++DTMQHI+SEVVTINVGL+ASMASF+LAAG              T+GKR ALPHSRVMIHQPMGGAQGQAEDIKVE
Sbjct:   78 RSPAASSGVGSLKMMPIGVPKVAYRIPGSPNADWIDIYNRLYRERIIFLGQEIDDEFANQIIGVMLYLDSEDSTKPIYIYMNCPGGSVIAGLAIYDTMQHIKSEVVTINVGLSASMASFLLAAG--------------TKGKRFALPHSRVMIHQPMGGAQGQAEDIKVE 233

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BLAST of mRNA_C-linearis_contig73.14937.1 vs. uniprot
Match: A0A7S1TU42_9STRA (ATP-dependent Clp protease proteolytic subunit n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TU42_9STRA)

HSP 1 Score: 265 bits (677), Expect = 1.240e-85
Identity = 140/201 (69.65%), Postives = 158/201 (78.61%), Query Frame = 0

Query:   24 SPSAFMTGTMSAGLRTPGATAALGREARTYRRLSTAKSGAASTVMMPIGVPKVAYRVPGAPNADWVDIYNRLYRERIIFLGQEIDDELANQIIGVLLYLDSEDSTKPIYLYVNCPGGSVIAGLALFDTMQHIRSEVVTINVGLAASMASFILAAGAKVCARVCNSRRILTQGKRMALPHSRVMIHQPMGGAQGQAEDIKVE 224
            S S F TGT++AGL  P A    G             SGA S VMMPIGVPKVAYRVPG+ +ADW+DIYNRLYRERIIF+GQEIDDE ANQIIGVLLYLDSED  KPIY+Y+NCPGGSVIAG+A++DTMQHI+++VVTINVG++ASMASF+LAAGAK              GKR+ALPHSRVMIHQPMGGAQGQAEDIKVE
Sbjct:   20 SASRFTTGTLNAGLYAPSAAGVRGT------------SGAGSMVMMPIGVPKVAYRVPGSGSADWIDIYNRLYRERIIFVGQEIDDEFANQIIGVLLYLDSEDPDKPIYMYLNCPGGSVIAGMAIYDTMQHIKADVVTINVGISASMASFLLAAGAK--------------GKRLALPHSRVMIHQPMGGAQGQAEDIKVE 194

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BLAST of mRNA_C-linearis_contig73.14937.1 vs. uniprot
Match: A0A7S2S0Z5_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S0Z5_9STRA)

HSP 1 Score: 259 bits (663), Expect = 2.280e-83
Identity = 130/166 (78.31%), Postives = 143/166 (86.14%), Query Frame = 0

Query:   59 AKSGAASTVMMPIGVPKVAYRVPGAPNADWVDIYNRLYRERIIFLGQEIDDELANQIIGVLLYLDSEDSTKPIYLYVNCPGGSVIAGLALFDTMQHIRSEVVTINVGLAASMASFILAAGAKVCARVCNSRRILTQGKRMALPHSRVMIHQPMGGAQGQAEDIKVE 224
            A+ GA   VMMPIGVPKVAYR+PG+P+ADWVDIYNRLYRERIIFLGQEIDDE+ANQIIGV+LYLDSEDS KPIYLY+NCPGGSVIAG+ALFDTM HI+S VVTIN+GL+ASMASF+LAAG +              G RMALPHSRVMIHQPMGGAQGQAEDIKVE
Sbjct:   60 ARQGAGGLVMMPIGVPKVAYRIPGSPSADWVDIYNRLYRERIIFLGQEIDDEIANQIIGVMLYLDSEDSKKPIYLYINCPGGSVIAGMALFDTMNHIKSPVVTINLGLSASMASFLLAAGKR--------------GSRMALPHSRVMIHQPMGGAQGQAEDIKVE 211

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BLAST of mRNA_C-linearis_contig73.14937.1 vs. uniprot
Match: A0A7S2CF89_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CF89_9STRA)

HSP 1 Score: 259 bits (662), Expect = 2.930e-83
Identity = 133/171 (77.78%), Postives = 148/171 (86.55%), Query Frame = 0

Query:   55 RLSTAKS-GAASTVMMPIGVPKVAYRVPGAPNADWVDIYNRLYRERIIFLGQEIDDELANQIIGVLLYLDSEDSTKPIYLYVNCPGGSVIAGLALFDTMQHIRSEVVTINVGLAASMASFILAAGAKVCARVCNSRRILTQGKRMALPHSRVMIHQPMGGAQGQAEDIKVE 224
            ++STA + GA   VMMPIGVPKVAYRVPG+P+ADWVDIYNRLYRERIIFLGQEIDDE+ANQIIGV+LYLDSEDS+KPIYLY+NCPGGSVIAG+ALFDTM HI+S+VVTIN+GLAASMASF+LA G K              G RMALP+SRVMIHQPMGGAQGQAEDIKVE
Sbjct:   51 KVSTANTAGAGGLVMMPIGVPKVAYRVPGSPSADWVDIYNRLYRERIIFLGQEIDDEIANQIIGVMLYLDSEDSSKPIYLYINCPGGSVIAGMALFDTMNHIKSKVVTINLGLAASMASFLLAGGEK--------------GSRMALPNSRVMIHQPMGGAQGQAEDIKVE 207

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BLAST of mRNA_C-linearis_contig73.14937.1 vs. uniprot
Match: F0YKH8_AURAN (ATP-dependent Clp protease proteolytic subunit n=2 Tax=Pelagomonadales TaxID=54409 RepID=F0YKH8_AURAN)

HSP 1 Score: 253 bits (645), Expect = 1.200e-81
Identity = 125/156 (80.13%), Postives = 138/156 (88.46%), Query Frame = 0

Query:   69 MPIGVPKVAYRVPGAPNADWVDIYNRLYRERIIFLGQEIDDELANQIIGVLLYLDSEDSTKPIYLYVNCPGGSVIAGLALFDTMQHIRSEVVTINVGLAASMASFILAAGAKVCARVCNSRRILTQGKRMALPHSRVMIHQPMGGAQGQAEDIKVE 224
            MPIGVPKVAYRVPGAP+ADW+DIYNRLYRERIIFLGQEIDDELANQIIGV+LYLDSEDSTKPIYLY+NCPGGSVIAGLA+FDTM HI+S+VVTIN+GL+ASMASF+L  G              T+G R+ALP+SRVMIHQPMGGAQGQAEDIKVE
Sbjct:    1 MPIGVPKVAYRVPGAPSADWIDIYNRLYRERIIFLGQEIDDELANQIIGVMLYLDSEDSTKPIYLYINCPGGSVIAGLAIFDTMNHIKSKVVTINIGLSASMASFLLCGG--------------TKGSRLALPNSRVMIHQPMGGAQGQAEDIKVE 142

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BLAST of mRNA_C-linearis_contig73.14937.1 vs. uniprot
Match: J7G5H7_9CRYP (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Chroomonas mesostigmatica CCMP1168 TaxID=1195612 RepID=J7G5H7_9CRYP)

HSP 1 Score: 254 bits (648), Expect = 1.450e-81
Identity = 128/165 (77.58%), Postives = 143/165 (86.67%), Query Frame = 0

Query:   60 KSGAASTVMMPIGVPKVAYRVPGAPNADWVDIYNRLYRERIIFLGQEIDDELANQIIGVLLYLDSEDSTKPIYLYVNCPGGSVIAGLALFDTMQHIRSEVVTINVGLAASMASFILAAGAKVCARVCNSRRILTQGKRMALPHSRVMIHQPMGGAQGQAEDIKVE 224
            K  +A+  MMPIGVPKVAYRVPGAP+ADWVDIYNRLYRERIIFLGQEIDDE+ANQII V+LYLDSED++KPIYLY+N PGGSVI+GLA++DTM+HI+SEVVTINVGLAASMASFILAAG K              GKR+ALPHSR+MIHQPMGGAQGQA DIKVE
Sbjct:   30 KKNSATIKMMPIGVPKVAYRVPGAPSADWVDIYNRLYRERIIFLGQEIDDEIANQIIAVMLYLDSEDNSKPIYLYINSPGGSVISGLAMYDTMRHIKSEVVTINVGLAASMASFILAAGEK--------------GKRLALPHSRIMIHQPMGGAQGQASDIKVE 180

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BLAST of mRNA_C-linearis_contig73.14937.1 vs. uniprot
Match: A0A7S1GRK0_CYCTE (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GRK0_CYCTE)

HSP 1 Score: 252 bits (644), Expect = 1.460e-80
Identity = 132/188 (70.21%), Postives = 152/188 (80.85%), Query Frame = 0

Query:   43 TAALGREARTYRRLSTAKSGAASTV------MMPIGVPKVAYRVPGAPNADWVDIYNRLYRERIIFLGQEIDDELANQIIGVLLYLDSEDSTKPIYLYVNCPGGSVIAGLALFDTMQHIRSEVVTINVGLAASMASFILAAGAKVCARVCNSRRILTQGKRMALPHSRVMIHQPMGGAQGQAEDIKVE 224
            T +L  ++++ R L    SG +++       MMPIGVPKVAYRVPG  +ADWVDIYNRLYRERIIFLG EIDDELANQIIGV+LYLDSEDSTKPIYLY+NCPGGSVI+GLA++D MQHI SEV+TIN+GLAASMASFILAAG++              GKR+ALP+SRVMIHQPMGGAQGQAEDIKVE
Sbjct:   30 TFSLATQSKSIRALGNVYSGGSASSRRNDIKMMPIGVPKVAYRVPGTQSADWVDIYNRLYRERIIFLGSEIDDELANQIIGVMLYLDSEDSTKPIYLYINCPGGSVISGLAIYDAMQHISSEVITINLGLAASMASFILAAGSR--------------GKRLALPNSRVMIHQPMGGAQGQAEDIKVE 203

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig73.14937.1 vs. uniprot

BLAST of mRNA_C-linearis_contig73.14937.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JGP1_9PHAE	2.470e-112	89.80	ATP-dependent Clp protease proteolytic subunit n=1...	[more]
D7FX14_ECTSI	1.950e-111	96.69	ATP-dependent Clp protease proteolytic subunit n=1...	[more]
A0A835Z885_9STRA	2.500e-96	75.74	ATP-dependent Clp protease proteolytic subunit n=1...	[more]
A0A0G4F8U0_VITBC	9.400e-86	78.82	ATP-dependent Clp protease proteolytic subunit n=1...	[more]
A0A7S1TU42_9STRA	1.240e-85	69.65	ATP-dependent Clp protease proteolytic subunit n=2...	[more]
A0A7S2S0Z5_9STRA	2.280e-83	78.31	ATP-dependent Clp protease proteolytic subunit n=1...	[more]
A0A7S2CF89_9STRA	2.930e-83	77.78	ATP-dependent Clp protease proteolytic subunit n=1...	[more]
F0YKH8_AURAN	1.200e-81	80.13	ATP-dependent Clp protease proteolytic subunit n=2...	[more]
J7G5H7_9CRYP	1.450e-81	77.58	ATP-dependent Clp protease proteolytic subunit n=1...	[more]
A0A7S1GRK0_CYCTE	1.460e-80	70.21	ATP-dependent Clp protease proteolytic subunit n=1...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001907	ATP-dependent Clp protease proteolytic subunit	PRINTS	PR00127	CLPPROTEASEP	coord: 130..150 score: 55.0 coord: 90..105 score: 62.97 coord: 161..178 score: 60.69
IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	PFAM	PF00574	CLP_protease	coord: 87..225 e-value: 1.6E-49 score: 168.3
IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	PANTHER	PTHR10381	ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT	coord: 60..224
None	No IPR available	GENE3D	3.90.226.10		coord: 73..238 e-value: 3.9E-51 score: 175.5
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 131..149
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 180..270
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..3
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..20
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 21..130
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 161..179
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 16..20
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 150..160
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 4..15
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..20 score: 0.771
None	No IPR available	TMHMM	TMhelix		coord: 7..29
IPR018215	ClpP, Ser active site	PROSITE	PS00381	CLP_PROTEASE_SER	coord: 161..172
IPR033135	ClpP, histidine active site	PROSITE	PS00382	CLP_PROTEASE_HIS	coord: 197..210
IPR029045	ClpP/crotonase-like domain superfamily	SUPERFAMILY	52096	ClpP/crotonase	coord: 84..238

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-linearis_contig73	contig	C-linearis_contig73:136153..141077 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig73.14937.1	mRNA_C-linearis_contig73.14937.1	Chordaria linearis ClinC8C monoicous	mRNA	C-linearis_contig73 134626..141081 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_C-linearis_contig73.14937.1 ID=prot_C-linearis_contig73.14937.1|Name=mRNA_C-linearis_contig73.14937.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=271bp
MVRAFCAVVGALLAVGQATAFFGSPSAFMTGTMSAGLRTPGATAALGREA
RTYRRLSTAKSGAASTVMMPIGVPKVAYRVPGAPNADWVDIYNRLYRERI
IFLGQEIDDELANQIIGVLLYLDSEDSTKPIYLYVNCPGGSVIAGLALFD
TMQHIRSEVVTINVGLAASMASFILAAGAKVCARVCNSRRILTQGKRMAL
PHSRVMIHQPMGGAQGQAEDIKVEKGARARTHAMIPGVVFSDVAAPKPLG
DFAGLSGPSVCDAAAGYELF*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001907	ClpP
IPR023562	ClpP/TepA
IPR018215	ClpP_Ser_AS
IPR033135	ClpP_His_AS
IPR029045	ClpP/crotonase-like_dom_sf