prot_C-linearis_contig110.1432.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig110.1432.1
Unique Nameprot_C-linearis_contig110.1432.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length664
Homology
BLAST of mRNA_C-linearis_contig110.1432.1 vs. uniprot
Match: D7G0V3_ECTSI (Protein with LSm motif. Putative LSm11 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0V3_ECTSI)

HSP 1 Score: 392 bits (1006), Expect = 3.610e-124
Identity = 340/726 (46.83%), Postives = 386/726 (53.17%), Query Frame = 0
Query:    1 MEELRKSLWSRLVVFYSVNKRDQLNPEVMAEIVAKYGSKEKELSARLLKKYRRPLPPSVPAQDLRRVLLEFGMEDQDVATA------------------AAAAAAVGRTSDERARRNPAGAARLEGQAGQGEGQAKRPPRGGELNFRSKFFDPLQALNHETLRPPFPRERALDNLAKFARMMPKRAAAAG-TATAGGAV------------------AGADANVLSPTSS-----TPKNPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPGESGVGGSIGGHYGPPVGSAEELDRIDKDMASKRRNAELLLAGGA-AGPAVPDEERFNPVQRIMREYAGKGPYSLLYRLHEDKRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVQEDYTAFVPDRDPKPKRQERRPQGAPSPNPLQGGGMGVEEEGDGLRGKPAEVRDTGSARGLSAGVGGEDGEGGWGTAGSLRXXXXXXXXXXXXXGGV------------EEVVRLSRPHGTAADGRKSAFGAEELDAGGGGGGDAFRGVVGGDRGAVAPAADSSGAR--VESVTVESAGARDEVASSHVGETQLFAETTGGLGSGQPLGAFLSEEGKVGDRGQG--ARRVIRIGEVQP----PPPGEEGSSDSNRVGGQGQHGSFGQPPVEGRGSGLQDDGASGATDV-KKKSNRRSRGRGPWTGKLVPVRRRRFLKQLMIRGDNVVMVWESSK 662
            M E R SLWSRLVVFYSVNKRDQLN +VMAEIVAKYGSKEKELSARLLKKY RPLPPSV +QDLRRVLLEFGMED+D+A                    + AAA  G      A R P   AR   + G+GEG A   P+G ELNFRSKFFDPLQAL H+TLRPPFP+E ALDNLAKF RM+PK  A+ G TATAGG                    +G D     P S       P N A                                      GG +   Y P V SA +++R DKDMAS+RR AE  LAG A A PA   EERFNPV+RI++EYAG GPYSLLYRLHE+ RRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDV+E+YTAFVP R P+P      P   PSP P        EEE    R   A  + TG   GL     G              XXXXXXXXXXXX G V            E+ V +S   G+     + A  A  +   GG  G   RG V GD G  +   D    R  V +V   S  A +E  S    E        GG  +         E G   +R +    RR     E +P    PP G +G  D NR               EGRG G    G   A +V KKKS RRSR +GPWTG+  PV RRR+LKQL+IRGDNVVM+WE+ K
Sbjct:    1 MGEPRTSLWSRLVVFYSVNKRDQLNAKVMAEIVAKYGSKEKELSARLLKKYSRPLPPSVASQDLRRVLLEFGMEDEDLARGKPSDPDRRASPLSPTGAMSTAAAGAGXXXXXXAGREPT--ARDNEKLGRGEG-AGSSPKGDELNFRSKFFDPLQALLHKTLRPPFPKEPALDNLAKFYRMLPKPHASTGPTATAGGXXXXXXXXXXXXXXXAADSRSGVDYFGAGPRSGGAGVIPPPNAAGSPRGSHQARETWPTSG---------------------GGRV--RYSPLVRSAADMERADKDMASRRRLAEGALAGDAEADPADFAEERFNPVKRIVQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVRENYTAFVPARGPRP------PPKQPSPKP-------AEEEDPIDRDAAAASKVTGF-EGL-----GXXXXXXXXXXXXXXXXXXXXXXXXXXLGKVTGXXXXXXAADDEKFVGISPADGS----EQRAATAWSVTGTGGFKGGRIRGEVAGDAGGRSERIDPRDRRMPVAAVAAASGAATEEACSDETRE--------GGARTATRTKLLPQEWGVTPEREEKDPTRRTPDAEEQRPRPPLPPAGRQGG-DVNRG--------------EGRGGGAT--GEIPAAEVRKKKSTRRSRSKGPWTGERKPVARRRYLKQLLIRGDNVVMIWEAPK 652          
BLAST of mRNA_C-linearis_contig110.1432.1 vs. uniprot
Match: A0A6H5LBR8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBR8_9PHAE)

HSP 1 Score: 372 bits (956), Expect = 9.210e-117
Identity = 318/700 (45.43%), Postives = 371/700 (53.00%), Query Frame = 0
Query:    1 MEELRKSLWSRLVVFYSVNKRDQLNPEVMAEIVAKYGSKEKELSARLLKKYRRPLPPSVPAQDLRRVLLEFGMEDQDVATA--------AAAAAAVGRTSDERARRNPAG--------AARLEGQAGQGEGQAKRPPRGGELNFRSKFFDPLQALNHETLRPPFPRERALDNLAKFARMMPKRAAAAG-TATAGGAVAGADANVLSPTSSTPKNPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPGESGVGGSIGGHYGPPVGSAEELDRIDKDMASKRRNAELLLAGGAAGPAVPDEERFNPVQRIMREYAGKGPYSLLYRLHEDKRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVQEDYTAFVPDRDPKPKRQERRPQGAPSPNPLQGGGMGVEEEGDGLRGKPAEVRDTGSARGLSAGVGGEDGEGGWGTAGSLRXXXXXXXXXXXXXG--GVEEVVRLSRPHGTAAD----GRKSAFGAEELDAG-------GGGGGDAFRGVVGGDRGAVAPAADSSGARVE--SVTVESAGARDEVASSHVGETQLFAETTGGLGSGQPLGAFLSEEGKVGDRGQG--ARRVIRIGEVQPPPP----GEEGSSDSNRVGGQGQHGSFGQPPVEGRGSGLQDDGASGATDVKKKSNRRSRGRGPWTGKLVPVRRRRFLKQLMIRGDNVVMVWESSK 662
            M E R SLWSRLVVFYSVNKRDQLNP+VMAEIVAKYGSKEKELSARLLKKY RPLP SV +QDLRRVLLEFGMED+D+A          ++  + +G  S   A    AG        AAR   + G+GEG A   P G ELNFRSKFFDPLQAL H+TLRPPFPRE ALDNLAKF RM+PK   + G  ATAG                   + +                                       G   G +G  V SA +++R DKDMA +RR AE  LAG A         RFNPV+RI++EYAG GPYSLLYRLHE+ RRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDV+E+YTAFVP R P+P      P   P P                   KPAE          ++ V G +G G         XXXXXXXXXXXXXG  G+ +V   +   G A D    G   A G+E   A        GG  G    G  GGD G  +        R++  +    S  A +E  S    E        GG  +   +     E G   +R +     R     E +P PP    G  G  D NR GG G+ G+ G+ P               A   KKKS RRSR +GPWTG+L PV RRR+LKQL+IRGDNVVM+WE+ K
Sbjct:    1 MGEPRTSLWSRLVVFYSVNKRDQLNPKVMAEIVAKYGSKEKELSARLLKKYGRPLPASVASQDLRRVLLEFGMEDEDLARGKPSDPDRRSSPLSPIGTMSTTVAGAGSAGTGVAGREAAARENKELGRGEG-AGSSPTGDELNFRSKFFDPLQALLHKTLRPPFPREPALDNLAKFYRMLPKPPTSTGPAATAGXXXXXXXXXXXXXXXXXADSRSGVSYFGSGHRGGGAGVVPPPAAAGSPRGSHQARKTWPASGGGRGRHGLLVRSAADMERADKDMALRRRLAEGALAGDAETDPADSAGRFNPVKRIVQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVRENYTAFVPARGPRP------PPKLPPP-------------------KPAEEDPIDRDAAAASKVTGFEGLGXXXXXXXXXXXXXXXXXXXXXXGPEGLGKVTAGAGXAGAADDDKSVGVSPADGSEPTGATAWTVTGTGGFKGGRISGEDGGDGGGSSERIYPRDPRMDVAAAAAASGAATEEACSDETRE--------GGARTATRMKLLPQEWGVPREREENDPTGRTPDAEEKRPRPPLSTAGRHGG-DVNRGGG-GEGGATGEIPA--------------AEVRKKKSTRRSRSKGPWTGELKPVARRRYLKQLLIRGDNVVMIWEAPK 650          
BLAST of mRNA_C-linearis_contig110.1432.1 vs. uniprot
Match: A0A836CP56_9STRA (Sm domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP56_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 3.210e-12
Identity = 90/345 (26.09%), Postives = 136/345 (39.42%), Query Frame = 0
Query:   29 MAEIVAKYGSKEKELSARLLKKYRRPLPPSVPAQDLRRVLLEFGMEDQDVATAAAAAAAVGRTSDERARRNP----------------AGAARLEGQAGQGEGQAKRPPRGGELNFRSKFFDPLQALNHETLRPPFPRERALDNLAKFARMMPKRAAAAGTATAGGAVAGADANVLSPTSSTPKNPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPGESGVGGSIGGHYGPPVGSAEELDRIDKDMASKRRNAELLLAGGAAGPAVPDEERFNPVQRIMREYAGK---GPYSLLYRLHEDKRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVQEDYT 354
            + +I AK+G ++++LSA+L KKY++PLP +V    +R + L FG+ D + A AA A                                A +A L G   Q   Q  R     +LNFRS+ F+ L AL  + +  P P  + LDN+ KF  ++P                  D  V  P  +                                                        G+A++     + M S    A+       A       ++ +P+  +M+   G    GP S L R+  + RR  VMIR VNS+RG C GL++AFD+H N+++VDV E YT
Sbjct:    3 LLQIEAKFGQRQEQLSAKLAKKYQQPLPAAVTDAAVRDICLRFGLNDPEEAGAADAXXXXXXXXXXXXXXXXXXXXXXXXXXPPHAVTASSASL-GVPSQQADQQHRHVADEQLNFRSRHFNALFALQADGVVLPVPNAQPLDNITKFRPLLPADHP--------------DRTVTRPPKAQ------------------------------------------------------SGTAQQ-----RHMRSAAAEAQPTAHERQASTQQ-HMQQADPLALVMQVALGPQGTGPMSFLGRMWRENRRVCVMIRYVNSVRGVCAGLLKAFDKHFNMVIVDVTERYT 272          
BLAST of mRNA_C-linearis_contig110.1432.1 vs. uniprot
Match: A0A662WXN3_9STRA (Sm domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WXN3_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 7.890e-9
Identity = 28/56 (50.00%), Postives = 42/56 (75.00%), Query Frame = 0
Query:  302 GPYSLLYRLHEDKRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVQEDYTAFV 357
            GP+ +L R   ++ R  V++RRVNS+RGTCTG ++AFD+HMNL+L+DV ++Y    
Sbjct:   84 GPFMVLRRCFLERTRVLVVVRRVNSVRGTCTGFLKAFDKHMNLVLLDVSQEYVPLT 139          
BLAST of mRNA_C-linearis_contig110.1432.1 vs. uniprot
Match: A0A2P4XRX7_9STRA (Sm domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XRX7_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 8.630e-9
Identity = 40/123 (32.52%), Postives = 64/123 (52.03%), Query Frame = 0
Query:  248 PVGSAEELDRIDKDM----ASKRRNAELLLAGGAAGPAVPDEERFNPVQ----------RIMREYAGKGPYSLLYRLHEDKRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVQEDYTAF 356
            PV +A  LD I K       S      L++    AGP+  + +     +           ++ +    GP+ +L R   ++ R  V++RRVNS+RGTC+G ++AFD+HMNL+L+DV  D+  F
Sbjct:  119 PVTTAYPLDNIQKCRHLLPESDVNRQTLIVRSKKAGPSAAEAKAATAKKAPTLSTPSLFEVLADTYLDGPFRVLRRCFLERTRVFVVVRRVNSVRGTCSGFLKAFDKHMNLVLLDVTHDFIPF 241          
BLAST of mRNA_C-linearis_contig110.1432.1 vs. uniprot
Match: F0XVT2_AURAN (Sm domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XVT2_AURAN)

HSP 1 Score: 70.1 bits (170), Expect = 9.630e-9
Identity = 46/112 (41.07%), Postives = 59/112 (52.68%), Query Frame = 0
Query:  251 SAEELDRIDKDMASKRRNAELLLAGGAAGPAVPDEERFNPVQRIMREYAGKGPYSLLYRLHEDKRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVQEDYTAFVPDRDP 362
            SA    R + D A+  R AELL        AV D  R              GP+ +L+R   D+    V++RRVN IRG+C GL++AFDRHMNL+LVD  E  T   P R+P
Sbjct:  123 SAHHAPRPEPDAAASSRGAELL-------EAVTDPLR-------------DGPHGVLWRALRDRAAVKVVLRRVNCIRGSCVGLLKAFDRHMNLVLVDAAE--TTVPPMRNP 212          
BLAST of mRNA_C-linearis_contig110.1432.1 vs. uniprot
Match: A0A5D6YBS7_9STRA (Sm domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YBS7_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.800e-8
Identity = 30/52 (57.69%), Postives = 42/52 (80.77%), Query Frame = 0
Query:  302 GPYSLLYRLHEDKRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVQEDY 353
            GP+++L R   ++RR  V++RRVNSIRGTC G ++AFD+HMNL+L+DV E Y
Sbjct:  192 GPFTVLRRCFLERRRVVVVVRRVNSIRGTCAGYLKAFDKHMNLVLLDVDERY 243          
BLAST of mRNA_C-linearis_contig110.1432.1 vs. uniprot
Match: A0A1V9YMI3_9STRA (Sm domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YMI3_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 2.230e-8
Identity = 32/86 (37.21%), Postives = 49/86 (56.98%), Query Frame = 0
Query:  277 AAGPAVPDEERFNPVQRIMREYAGKGPYSLLYRLHEDKRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVQEDYTAFVPDRDP 362
            A  P V    +  P+   + +    GP ++L  + + + +  V+IRRVNSIRGTCTG ++ FD+H N++L+DV E Y   V    P
Sbjct:  142 AVAPKVAPAPQRPPLLETIADLCADGPLNILRAILKARAKVCVVIRRVNSIRGTCTGYLKGFDKHFNIILLDVTERYVPLVSGEQP 227          
BLAST of mRNA_C-linearis_contig110.1432.1 vs. uniprot
Match: A0A7S4A1D1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A1D1_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 3.330e-8
Identity = 42/115 (36.52%), Postives = 58/115 (50.43%), Query Frame = 0
Query:  247 PPVGSAEELDRIDKDMASKRRNAELLLAGGAAG-------PAVPDEERFNPVQRIMREYAGKGPYSLLYRLHEDKRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVQEDYT 354
            PPV +A  LD + K       ++E        G       P+     R   +   + +   +GP+SLL+R   D+ R  V +RR+NSIRG   G ++AFDRHMNLLLVD  E  T
Sbjct:   79 PPVPNAPPLDNLSKFRPFLPHSSEYHDTRVKQGAHHVVREPSATSTNRGVALLSQVTDTLREGPHSLLWRALRDRVRVRVTLRRINSIRGVVVGHLKAFDRHMNLLLVDAAETTT 193          
BLAST of mRNA_C-linearis_contig110.1432.1 vs. uniprot
Match: V9F378_PHYPR (Sm domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=V9F378_PHYPR)

HSP 1 Score: 66.2 bits (160), Expect = 4.860e-8
Identity = 42/126 (33.33%), Postives = 68/126 (53.97%), Query Frame = 0
Query:  248 PVGSAEELDRIDK------DMASKRR--------------NAELLLAGGAAGPAVPDEERFNPVQRIMREYAGKGPYSLLYRLHEDKRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVQEDY 353
            PV +A  LD I K      ++   R+              +A+  +   A  PA P     +  +++   Y  +GP+ +L R   ++ R  V+IRRVNS+RGTC+G ++AFD+HMNL+L+DV +D+
Sbjct:  115 PVATAHPLDNIQKCRHLLPELDVNRQTLVVRPKKPSPSAADAKAAVVKKAPAPATP-----SLFEQLADTYL-EGPFRVLRRCFLERMRVFVVIRRVNSVRGTCSGFLKAFDKHMNLVLLDVTQDF 234          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig110.1432.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0V3_ECTSI3.610e-12446.83Protein with LSm motif. Putative LSm11 n=1 Tax=Ect... [more]
A0A6H5LBR8_9PHAE9.210e-11745.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CP56_9STRA3.210e-1226.09Sm domain-containing protein n=1 Tax=Tribonema min... [more]
A0A662WXN3_9STRA7.890e-950.00Sm domain-containing protein n=1 Tax=Nothophytopht... [more]
A0A2P4XRX7_9STRA8.630e-932.52Sm domain-containing protein n=1 Tax=Phytophthora ... [more]
F0XVT2_AURAN9.630e-941.07Sm domain-containing protein n=1 Tax=Aureococcus a... [more]
A0A5D6YBS7_9STRA1.800e-857.69Sm domain-containing protein n=1 Tax=Pythium brass... [more]
A0A1V9YMI3_9STRA2.230e-837.21Sm domain-containing protein n=1 Tax=Achlya hypogy... [more]
A0A7S4A1D1_9STRA3.330e-836.52Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
V9F378_PHYPR4.860e-833.33Sm domain-containing protein n=9 Tax=Phytophthora ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.30.30.100coord: 284..378
e-value: 9.8E-12
score: 46.6
IPR039267U7 snRNA-associated Sm-like protein Lsm11PANTHERPTHR21415U7 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM11coord: 287..661
coord: 116..170
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 302..359

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig110contigC-linearis_contig110:48950..53600 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig110.1432.1mRNA_C-linearis_contig110.1432.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig110 48906..53862 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig110.1432.1 ID=prot_C-linearis_contig110.1432.1|Name=mRNA_C-linearis_contig110.1432.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=664bp
MEELRKSLWSRLVVFYSVNKRDQLNPEVMAEIVAKYGSKEKELSARLLKK
YRRPLPPSVPAQDLRRVLLEFGMEDQDVATAAAAAAAVGRTSDERARRNP
AGAARLEGQAGQGEGQAKRPPRGGELNFRSKFFDPLQALNHETLRPPFPR
ERALDNLAKFARMMPKRAAAAGTATAGGAVAGADANVLSPTSSTPKNPAV
AAGSGPIRKPSAGNPVGGAVAAGGGGMRRRGPGESGVGGSIGGHYGPPVG
SAEELDRIDKDMASKRRNAELLLAGGAAGPAVPDEERFNPVQRIMREYAG
KGPYSLLYRLHEDKRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVQ
EDYTAFVPDRDPKPKRQERRPQGAPSPNPLQGGGMGVEEEGDGLRGKPAE
VRDTGSARGLSAGVGGEDGEGGWGTAGSLRWSGGGSVSWGGGGGGVEEVV
RLSRPHGTAADGRKSAFGAEELDAGGGGGGDAFRGVVGGDRGAVAPAADS
SGARVESVTVESAGARDEVASSHVGETQLFAETTGGLGSGQPLGAFLSEE
GKVGDRGQGARRVIRIGEVQPPPPGEEGSSDSNRVGGQGQHGSFGQPPVE
GRGSGLQDDGASGATDVKKKSNRRSRGRGPWTGKLVPVRRRRFLKQLMIR
GDNVVMVWESSKR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039267Lsm11
IPR010920LSM_dom_sf