mRNA_C-linearis_contig110.1432.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig110.1432.1
Unique NamemRNA_C-linearis_contig110.1432.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig110.1432.1 vs. uniprot
Match: D7G0V3_ECTSI (Protein with LSm motif. Putative LSm11 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0V3_ECTSI)

HSP 1 Score: 392 bits (1006), Expect = 6.560e-123
Identity = 340/726 (46.83%), Postives = 386/726 (53.17%), Query Frame = 3 
Query:   45 MEELRKSLWSRLVVFYSVNKRDQLNPEVMAEIVAKYGSKEKELSARLLKKYRRPLPPSVPAQDLRRVLLEFGMEDQDVATA------------------AAAAAAVGRTSDERARRNPAGAARLEGQAGQGEGQAKRPPRGGELNFRSKFFDPLQALNHETLRPPFPRERALDNLAKFARMMPKRAAAAG-TATAGGAV------------------AGADANVLSPTSS-----TPKNPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPGESGVGGSIGGHYGPPVGSAEELDRIDKDMASKRRNAELLLAGGA-AGPAVPDEERFNPVQRIMREYAGKGPYSLLYRLHEDKRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVQEDYTAFVPDRDPKPKRQERRPQGAPSPNPLQGGGMGVEEEGDGLRGKPAEVRDTGSARGLSAGVGGEDGEGGWGTAGSLRXXXXXXXXXXXXXGGV------------EEVVRLSRPHGTAADGRKSAFGAEELDAGGGGGGDAFRGVVGGDRGAVAPAADSSGAR--VESVTVESAGARDEVASSHVGETQLFAETTGGLGSGQPLGAFLSEEGKVGDRGQG--ARRVIRIGEVQP----PPPGEEGSSDSNRVGGQGQHGSFGQPPVEGRGSGLQDDGASGATDV-KKKSNRRSRGRGPWTGKLVPVRRRRFLKQLMIRGDNVVMVWESSK 2030
            M E R SLWSRLVVFYSVNKRDQLN +VMAEIVAKYGSKEKELSARLLKKY RPLPPSV +QDLRRVLLEFGMED+D+A                    + AAA  G      A R P   AR   + G+GEG A   P+G ELNFRSKFFDPLQAL H+TLRPPFP+E ALDNLAKF RM+PK  A+ G TATAGG                    +G D     P S       P N A                                      GG +   Y P V SA +++R DKDMAS+RR AE  LAG A A PA   EERFNPV+RI++EYAG GPYSLLYRLHE+ RRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDV+E+YTAFVP R P+P      P   PSP P        EEE    R   A  + TG   GL     G              XXXXXXXXXXXX G V            E+ V +S   G+     + A  A  +   GG  G   RG V GD G  +   D    R  V +V   S  A +E  S    E        GG  +         E G   +R +    RR     E +P    PP G +G  D NR               EGRG G    G   A +V KKKS RRSR +GPWTG+  PV RRR+LKQL+IRGDNVVM+WE+ K
Sbjct:    1 MGEPRTSLWSRLVVFYSVNKRDQLNAKVMAEIVAKYGSKEKELSARLLKKYSRPLPPSVASQDLRRVLLEFGMEDEDLARGKPSDPDRRASPLSPTGAMSTAAAGAGXXXXXXAGREPT--ARDNEKLGRGEG-AGSSPKGDELNFRSKFFDPLQALLHKTLRPPFPKEPALDNLAKFYRMLPKPHASTGPTATAGGXXXXXXXXXXXXXXXAADSRSGVDYFGAGPRSGGAGVIPPPNAAGSPRGSHQARETWPTSG---------------------GGRV--RYSPLVRSAADMERADKDMASRRRLAEGALAGDAEADPADFAEERFNPVKRIVQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVRENYTAFVPARGPRP------PPKQPSPKP-------AEEEDPIDRDAAAASKVTGF-EGL-----GXXXXXXXXXXXXXXXXXXXXXXXXXXLGKVTGXXXXXXAADDEKFVGISPADGS----EQRAATAWSVTGTGGFKGGRIRGEVAGDAGGRSERIDPRDRRMPVAAVAAASGAATEEACSDETRE--------GGARTATRTKLLPQEWGVTPEREEKDPTRRTPDAEEQRPRPPLPPAGRQGG-DVNRG--------------EGRGGGAT--GEIPAAEVRKKKSTRRSRSKGPWTGERKPVARRRYLKQLLIRGDNVVMIWEAPK 652
[Close]
BLAST of mRNA_C-linearis_contig110.1432.1 vs. uniprot
Match: A0A6H5LBR8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBR8_9PHAE)

HSP 1 Score: 372 bits (956), Expect = 1.540e-115
Identity = 318/700 (45.43%), Postives = 371/700 (53.00%), Query Frame = 3 
Query:   45 MEELRKSLWSRLVVFYSVNKRDQLNPEVMAEIVAKYGSKEKELSARLLKKYRRPLPPSVPAQDLRRVLLEFGMEDQDVATA--------AAAAAAVGRTSDERARRNPAG--------AARLEGQAGQGEGQAKRPPRGGELNFRSKFFDPLQALNHETLRPPFPRERALDNLAKFARMMPKRAAAAG-TATAGGAVAGADANVLSPTSSTPKNPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPGESGVGGSIGGHYGPPVGSAEELDRIDKDMASKRRNAELLLAGGAAGPAVPDEERFNPVQRIMREYAGKGPYSLLYRLHEDKRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVQEDYTAFVPDRDPKPKRQERRPQGAPSPNPLQGGGMGVEEEGDGLRGKPAEVRDTGSARGLSAGVGGEDGEGGWGTAGSLRXXXXXXXXXXXXXG--GVEEVVRLSRPHGTAAD----GRKSAFGAEELDAG-------GGGGGDAFRGVVGGDRGAVAPAADSSGARVE--SVTVESAGARDEVASSHVGETQLFAETTGGLGSGQPLGAFLSEEGKVGDRGQG--ARRVIRIGEVQPPPP----GEEGSSDSNRVGGQGQHGSFGQPPVEGRGSGLQDDGASGATDVKKKSNRRSRGRGPWTGKLVPVRRRRFLKQLMIRGDNVVMVWESSK 2030
            M E R SLWSRLVVFYSVNKRDQLNP+VMAEIVAKYGSKEKELSARLLKKY RPLP SV +QDLRRVLLEFGMED+D+A          ++  + +G  S   A    AG        AAR   + G+GEG A   P G ELNFRSKFFDPLQAL H+TLRPPFPRE ALDNLAKF RM+PK   + G  ATAG                   + +                                       G   G +G  V SA +++R DKDMA +RR AE  LAG A         RFNPV+RI++EYAG GPYSLLYRLHE+ RRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDV+E+YTAFVP R P+P      P   P P                   KPAE          ++ V G +G G         XXXXXXXXXXXXXG  G+ +V   +   G A D    G   A G+E   A        GG  G    G  GGD G  +        R++  +    S  A +E  S    E        GG  +   +     E G   +R +     R     E +P PP    G  G  D NR GG G+ G+ G+ P               A   KKKS RRSR +GPWTG+L PV RRR+LKQL+IRGDNVVM+WE+ K
Sbjct:    1 MGEPRTSLWSRLVVFYSVNKRDQLNPKVMAEIVAKYGSKEKELSARLLKKYGRPLPASVASQDLRRVLLEFGMEDEDLARGKPSDPDRRSSPLSPIGTMSTTVAGAGSAGTGVAGREAAARENKELGRGEG-AGSSPTGDELNFRSKFFDPLQALLHKTLRPPFPREPALDNLAKFYRMLPKPPTSTGPAATAGXXXXXXXXXXXXXXXXXADSRSGVSYFGSGHRGGGAGVVPPPAAAGSPRGSHQARKTWPASGGGRGRHGLLVRSAADMERADKDMALRRRLAEGALAGDAETDPADSAGRFNPVKRIVQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVRENYTAFVPARGPRP------PPKLPPP-------------------KPAEEDPIDRDAAAASKVTGFEGLGXXXXXXXXXXXXXXXXXXXXXXGPEGLGKVTAGAGXAGAADDDKSVGVSPADGSEPTGATAWTVTGTGGFKGGRISGEDGGDGGGSSERIYPRDPRMDVAAAAAASGAATEEACSDETRE--------GGARTATRMKLLPQEWGVPREREENDPTGRTPDAEEKRPRPPLSTAGRHGG-DVNRGGG-GEGGATGEIPA--------------AEVRKKKSTRRSRSKGPWTGELKPVARRRYLKQLLIRGDNVVMIWEAPK 650
[Close]
BLAST of mRNA_C-linearis_contig110.1432.1 vs. uniprot
Match: A0A836CP56_9STRA (Sm domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP56_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 3.970e-12
Identity = 90/345 (26.09%), Postives = 136/345 (39.42%), Query Frame = 3 
Query:  129 MAEIVAKYGSKEKELSARLLKKYRRPLPPSVPAQDLRRVLLEFGMEDQDVATAAAAAAAVGRTSDERARRNP----------------AGAARLEGQAGQGEGQAKRPPRGGELNFRSKFFDPLQALNHETLRPPFPRERALDNLAKFARMMPKRAAAAGTATAGGAVAGADANVLSPTSSTPKNPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPGESGVGGSIGGHYGPPVGSAEELDRIDKDMASKRRNAELLLAGGAAGPAVPDEERFNPVQRIMREYAGK---GPYSLLYRLHEDKRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVQEDYT 1106
            + +I AK+G ++++LSA+L KKY++PLP +V    +R + L FG+ D + A AA A                                A +A L G   Q   Q  R     +LNFRS+ F+ L AL  + +  P P  + LDN+ KF  ++P                  D  V  P  +                                                        G+A++     + M S    A+       A       ++ +P+  +M+   G    GP S L R+  + RR  VMIR VNS+RG C GL++AFD+H N+++VDV E YT
Sbjct:    3 LLQIEAKFGQRQEQLSAKLAKKYQQPLPAAVTDAAVRDICLRFGLNDPEEAGAADAXXXXXXXXXXXXXXXXXXXXXXXXXXPPHAVTASSASL-GVPSQQADQQHRHVADEQLNFRSRHFNALFALQADGVVLPVPNAQPLDNITKFRPLLPADHP--------------DRTVTRPPKAQ------------------------------------------------------SGTAQQ-----RHMRSAAAEAQPTAHERQASTQQ-HMQQADPLALVMQVALGPQGTGPMSFLGRMWRENRRVCVMIRYVNSVRGVCAGLLKAFDKHFNMVIVDVTERYT 272
[Close]
BLAST of mRNA_C-linearis_contig110.1432.1 vs. uniprot
Match: A0A662WXN3_9STRA (Sm domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WXN3_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 9.420e-9
Identity = 28/56 (50.00%), Postives = 42/56 (75.00%), Query Frame = 3 
Query:  948 GPYSLLYRLHEDKRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVQEDYTAFV 1115
            GP+ +L R   ++ R  V++RRVNS+RGTCTG ++AFD+HMNL+L+DV ++Y    
Sbjct:   84 GPFMVLRRCFLERTRVLVVVRRVNSVRGTCTGFLKAFDKHMNLVLLDVSQEYVPLT 139
[Close]
BLAST of mRNA_C-linearis_contig110.1432.1 vs. uniprot
Match: A0A2P4XRX7_9STRA (Sm domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XRX7_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 1.050e-8
Identity = 40/123 (32.52%), Postives = 64/123 (52.03%), Query Frame = 3 
Query:  786 PVGSAEELDRIDKDM----ASKRRNAELLLAGGAAGPAVPDEERFNPVQ----------RIMREYAGKGPYSLLYRLHEDKRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVQEDYTAF 1112
            PV +A  LD I K       S      L++    AGP+  + +     +           ++ +    GP+ +L R   ++ R  V++RRVNS+RGTC+G ++AFD+HMNL+L+DV  D+  F
Sbjct:  119 PVTTAYPLDNIQKCRHLLPESDVNRQTLIVRSKKAGPSAAEAKAATAKKAPTLSTPSLFEVLADTYLDGPFRVLRRCFLERTRVFVVVRRVNSVRGTCSGFLKAFDKHMNLVLLDVTHDFIPF 241
[Close]
BLAST of mRNA_C-linearis_contig110.1432.1 vs. uniprot
Match: F0XVT2_AURAN (Sm domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XVT2_AURAN)

HSP 1 Score: 70.1 bits (170), Expect = 1.220e-8
Identity = 46/112 (41.07%), Postives = 59/112 (52.68%), Query Frame = 3 
Query:  795 SAEELDRIDKDMASKRRNAELLLAGGAAGPAVPDEERFNPVQRIMREYAGKGPYSLLYRLHEDKRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVQEDYTAFVPDRDP 1130
            SA    R + D A+  R AELL        AV D  R              GP+ +L+R   D+    V++RRVN IRG+C GL++AFDRHMNL+LVD  E  T   P R+P
Sbjct:  123 SAHHAPRPEPDAAASSRGAELL-------EAVTDPLR-------------DGPHGVLWRALRDRAAVKVVLRRVNCIRGSCVGLLKAFDRHMNLVLVDAAE--TTVPPMRNP 212
[Close]
BLAST of mRNA_C-linearis_contig110.1432.1 vs. uniprot
Match: A0A5D6YBS7_9STRA (Sm domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YBS7_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 2.190e-8
Identity = 30/52 (57.69%), Postives = 42/52 (80.77%), Query Frame = 3 
Query:  948 GPYSLLYRLHEDKRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVQEDY 1103
            GP+++L R   ++RR  V++RRVNSIRGTC G ++AFD+HMNL+L+DV E Y
Sbjct:  192 GPFTVLRRCFLERRRVVVVVRRVNSIRGTCAGYLKAFDKHMNLVLLDVDERY 243
[Close]
BLAST of mRNA_C-linearis_contig110.1432.1 vs. uniprot
Match: A0A1V9YMI3_9STRA (Sm domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YMI3_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 2.700e-8
Identity = 32/86 (37.21%), Postives = 49/86 (56.98%), Query Frame = 3 
Query:  873 AAGPAVPDEERFNPVQRIMREYAGKGPYSLLYRLHEDKRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVQEDYTAFVPDRDP 1130
            A  P V    +  P+   + +    GP ++L  + + + +  V+IRRVNSIRGTCTG ++ FD+H N++L+DV E Y   V    P
Sbjct:  142 AVAPKVAPAPQRPPLLETIADLCADGPLNILRAILKARAKVCVVIRRVNSIRGTCTGYLKGFDKHFNIILLDVTERYVPLVSGEQP 227
[Close]
BLAST of mRNA_C-linearis_contig110.1432.1 vs. uniprot
Match: A0A7S4A1D1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A1D1_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 3.990e-8
Identity = 42/115 (36.52%), Postives = 58/115 (50.43%), Query Frame = 3 
Query:  783 PPVGSAEELDRIDKDMASKRRNAELLLAGGAAG-------PAVPDEERFNPVQRIMREYAGKGPYSLLYRLHEDKRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVQEDYT 1106
            PPV +A  LD + K       ++E        G       P+     R   +   + +   +GP+SLL+R   D+ R  V +RR+NSIRG   G ++AFDRHMNLLLVD  E  T
Sbjct:   79 PPVPNAPPLDNLSKFRPFLPHSSEYHDTRVKQGAHHVVREPSATSTNRGVALLSQVTDTLREGPHSLLWRALRDRVRVRVTLRRINSIRGVVVGHLKAFDRHMNLLLVDAAETTT 193
[Close]
BLAST of mRNA_C-linearis_contig110.1432.1 vs. uniprot
Match: V9F378_PHYPR (Sm domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=V9F378_PHYPR)

HSP 1 Score: 66.2 bits (160), Expect = 5.920e-8
Identity = 42/126 (33.33%), Postives = 68/126 (53.97%), Query Frame = 3 
Query:  786 PVGSAEELDRIDK------DMASKRR--------------NAELLLAGGAAGPAVPDEERFNPVQRIMREYAGKGPYSLLYRLHEDKRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVQEDY 1103
            PV +A  LD I K      ++   R+              +A+  +   A  PA P     +  +++   Y  +GP+ +L R   ++ R  V+IRRVNS+RGTC+G ++AFD+HMNL+L+DV +D+
Sbjct:  115 PVATAHPLDNIQKCRHLLPELDVNRQTLVVRPKKPSPSAADAKAAVVKKAPAPATP-----SLFEQLADTYL-EGPFRVLRRCFLERMRVFVVIRRVNSVRGTCSGFLKAFDKHMNLVLLDVTQDF 234
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig110.1432.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0V3_ECTSI6.560e-12346.83Protein with LSm motif. Putative LSm11 n=1 Tax=Ect... [more]
A0A6H5LBR8_9PHAE1.540e-11545.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CP56_9STRA3.970e-1226.09Sm domain-containing protein n=1 Tax=Tribonema min... [more]
A0A662WXN3_9STRA9.420e-950.00Sm domain-containing protein n=1 Tax=Nothophytopht... [more]
A0A2P4XRX7_9STRA1.050e-832.52Sm domain-containing protein n=1 Tax=Phytophthora ... [more]
F0XVT2_AURAN1.220e-841.07Sm domain-containing protein n=1 Tax=Aureococcus a... [more]
A0A5D6YBS7_9STRA2.190e-857.69Sm domain-containing protein n=1 Tax=Pythium brass... [more]
A0A1V9YMI3_9STRA2.700e-837.21Sm domain-containing protein n=1 Tax=Achlya hypogy... [more]
A0A7S4A1D1_9STRA3.990e-836.52Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
V9F378_PHYPR5.920e-833.33Sm domain-containing protein n=9 Tax=Phytophthora ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig110contigC-linearis_contig110:48906..53862 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.4
Seed ortholog evalue8.9e-10
Seed eggNOG ortholog44056.XP_009032313.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.LSM domain
EggNOG OGs28JKK@1,2QRZV@2759
Ec32 ortholog descriptionProtein with LSm motif. Putative LSm11
Ec32 orthologEc-23_002180.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size2298
Cds size1992
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig110.1432.1prot_C-linearis_contig110.1432.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig110 48950..53600 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927473.3883336-UTR-C-linearis_contig110:48905..489491622927473.3883336-UTR-C-linearis_contig110:48905..48949Chordaria linearis ClinC8C monoicousUTRC-linearis_contig110 48906..48949 +
1690879721.724268-UTR-C-linearis_contig110:48905..489491690879721.724268-UTR-C-linearis_contig110:48905..48949Chordaria linearis ClinC8C monoicousUTRC-linearis_contig110 48906..48949 +
1622927473.460613-UTR-C-linearis_contig110:53600..538621622927473.460613-UTR-C-linearis_contig110:53600..53862Chordaria linearis ClinC8C monoicousUTRC-linearis_contig110 53601..53862 +
1690879721.7928839-UTR-C-linearis_contig110:53600..538621690879721.7928839-UTR-C-linearis_contig110:53600..53862Chordaria linearis ClinC8C monoicousUTRC-linearis_contig110 53601..53862 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927473.3973467-CDS-C-linearis_contig110:48949..490301622927473.3973467-CDS-C-linearis_contig110:48949..49030Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 48950..49030 +
1690879721.7343962-CDS-C-linearis_contig110:48949..490301690879721.7343962-CDS-C-linearis_contig110:48949..49030Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 48950..49030 +
1622927473.4057677-CDS-C-linearis_contig110:50367..506971622927473.4057677-CDS-C-linearis_contig110:50367..50697Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 50368..50697 +
1690879721.7424476-CDS-C-linearis_contig110:50367..506971690879721.7424476-CDS-C-linearis_contig110:50367..50697Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 50368..50697 +
1622927473.4142091-CDS-C-linearis_contig110:50976..511751622927473.4142091-CDS-C-linearis_contig110:50976..51175Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 50977..51175 +
1690879721.753077-CDS-C-linearis_contig110:50976..511751690879721.753077-CDS-C-linearis_contig110:50976..51175Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 50977..51175 +
1622927473.422959-CDS-C-linearis_contig110:51301..515441622927473.422959-CDS-C-linearis_contig110:51301..51544Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 51302..51544 +
1690879721.7623627-CDS-C-linearis_contig110:51301..515441690879721.7623627-CDS-C-linearis_contig110:51301..51544Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 51302..51544 +
1622927473.4342806-CDS-C-linearis_contig110:52077..522011622927473.4342806-CDS-C-linearis_contig110:52077..52201Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 52078..52201 +
1690879721.7714362-CDS-C-linearis_contig110:52077..522011690879721.7714362-CDS-C-linearis_contig110:52077..52201Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 52078..52201 +
1622927473.4464304-CDS-C-linearis_contig110:52585..536001622927473.4464304-CDS-C-linearis_contig110:52585..53600Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 52586..53600 +
1690879721.7830236-CDS-C-linearis_contig110:52585..536001690879721.7830236-CDS-C-linearis_contig110:52585..53600Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 52586..53600 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig110.1432.1

>prot_C-linearis_contig110.1432.1 ID=prot_C-linearis_contig110.1432.1|Name=mRNA_C-linearis_contig110.1432.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=664bp
MEELRKSLWSRLVVFYSVNKRDQLNPEVMAEIVAKYGSKEKELSARLLKK
YRRPLPPSVPAQDLRRVLLEFGMEDQDVATAAAAAAAVGRTSDERARRNP
AGAARLEGQAGQGEGQAKRPPRGGELNFRSKFFDPLQALNHETLRPPFPR
ERALDNLAKFARMMPKRAAAAGTATAGGAVAGADANVLSPTSSTPKNPAV
AAGSGPIRKPSAGNPVGGAVAAGGGGMRRRGPGESGVGGSIGGHYGPPVG
SAEELDRIDKDMASKRRNAELLLAGGAAGPAVPDEERFNPVQRIMREYAG
KGPYSLLYRLHEDKRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVQ
EDYTAFVPDRDPKPKRQERRPQGAPSPNPLQGGGMGVEEEGDGLRGKPAE
VRDTGSARGLSAGVGGEDGEGGWGTAGSLRWSGGGSVSWGGGGGGVEEVV
RLSRPHGTAADGRKSAFGAEELDAGGGGGGDAFRGVVGGDRGAVAPAADS
SGARVESVTVESAGARDEVASSHVGETQLFAETTGGLGSGQPLGAFLSEE
GKVGDRGQGARRVIRIGEVQPPPPGEEGSSDSNRVGGQGQHGSFGQPPVE
GRGSGLQDDGASGATDVKKKSNRRSRGRGPWTGKLVPVRRRRFLKQLMIR
GDNVVMVWESSKR*
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mRNA from alignment at C-linearis_contig110:48906..53862+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig110.1432.1 ID=mRNA_C-linearis_contig110.1432.1|Name=mRNA_C-linearis_contig110.1432.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4957bp|location=Sequence derived from alignment at C-linearis_contig110:48906..53862+ (Chordaria linearis ClinC8C monoicous)
TGCTGTCCCTCCTCGAGAGAGACGGCATCGCTCCCAGCCTAGTCATGGAG
GAACTACGGAAATCTTTGTGGTCTCGGCTGGTGGTGTTCTACTCCGTCAA
CAAGAGGGACCAGCTCAACCCTGAGGTAGGACGAGTGCGGAGAACTACTG
CTGTAAGTGTGGGCAAAAGTTGCGGCGGACATGCACCTACGCGCCATTGC
CACGCCGACCATGGACCAGCACAGTTTCACCTCGAGGGTAGGCCAGCTTT
GTAGGATACTGAACGACCACCCCCGCAATAAACGTAGCCACGTTTACCGT
TGGTAGCTGTAGGATGAGCACCACGGATGATCCGAGAGAGAGGGAGCCAG
CGCAAACGACATCAGGGGCCGGCGTCCAAGCCGTTCAAACGTCCAAACGG
CATGTGTGAGCCCAAGCTAAATCCAGCGACCAAGCTTTGCTTGGTTGTTC
TTCATGTAGGATTAGTTCTCAGAGAGACCGTACGTGGTGTAGTTGCACTG
CTTTTTGGCTTGGTAAGCTCAGGTCGGCAGCTGGGCTGCTGTGTGGAGAG
TCGCAACAGCGGCCTAAACACTCCGCAAAACGTACAGCAGTGACCGGTAA
AGTCAAACATCCTCCGCGGGTGTTCTTGCTACCACAGACCCTGAGCTGCG
ATTCTTCCAAGGCTGCTGTTGGGGCATGATTTTTTGCCGGGTTAGTGCTG
TAGGCCCTCAGTTCAGGAGGGGGGGTCCGTGACGCTGAGTACACGTACAC
CGTTTTAAAAATGGATGGGCGTGGGTTTTGTTTTTATCACGGGGAATGTC
GGCGGCTGCTGCGACCTTCGAAGTCACAACGTCTGTTGGTGCCTTTGAGT
TTCAATGCTAAAAGGAGTGCCGTTTTCGAATTATTGGGCCTTGCCGTCTT
GAAACCGGTCGACGATCTCCACTGCCGTTATCTCAACTGCCTCAAAATCG
GCACACACAAACAAGCACACAAACACACACACACACACAGCCGCGCCCCG
GTAGTGCAGTAGGTAACCACGCAAACCAACTAGAAACCAGGTCATGGGTT
CGAATCCCGACGAACGCGAGTTTTTTTCTCAAATTCGTTCCTGGTAAAAT
TGAAAGCGGTAATTTGTCTGGTGGCACTATACCCGTTAGTAAATGAATCG
ACTTGAAAGACAGTCGGAGAGGGCAGGGAGTGCTGAACCCTACTCTCGAT
AAAAAACATCAAAGGCATGAACCGCAGGAGGGGGTCCAACCCCCCCCTCC
TGTGTGACCCCGGTTGGGTCGTCTAGCTAGTAGAAGTGGCGGAAGGGGGC
CAGAGGGGCAGACGACAGAGTCCAATAATGGGAGGATAAAACAAAACAAA
AAACACACACACACACACACACACACACACACACACAAGCACGAAAGGGG
ATATTCTACAGCTGACATGCTGCCTACGTGCTCGGCGTACACTTCCCCCC
CCCCCACTTCAGGTGATGGCAGAGATCGTGGCAAAGTACGGCTCGAAGGA
AAAGGAGCTGTCCGCCCGTCTCCTCAAGAAGTACCGGCGGCCGTTGCCCC
CATCGGTGCCTGCTCAAGACCTGCGGCGAGTATTACTCGAGTTTGGCATG
GAAGACCAGGACGTGGCCACCGCGGCGGCGGCTGCAGCGGCAGTGGGTAG
AACCAGCGATGAGCGGGCTAGGCGAAACCCCGCCGGCGCGGCGAGACTGG
AAGGCCAGGCCGGGCAGGGCGAGGGGCAAGCGAAGCGGCCGCCTAGAGGG
GGCGAGCTCAATTTCCGGTCGAAGTTTTTCGACCCGCTTCAGGTATCTAC
GAACGAGAAACGAGGAGAGCTGGCTACTGCAGCGTCAATGAAATGAACCC
CCCCCCCCGCGGGGTTTCCTTGAGCAACTCGCAGGAAGCTGACTGAAGGA
GGCTAAAAACGTGTCTTTGTGCGTAGCATGGAGGCATAGCCCTGCCATCC
CCGTGTTTCTTTCCTTTCCTATTATAGCCTTCGCAACTCGTACGAGCCTC
CCACTGGAGAGGGACAAACCAACTCCCTCTTGGCTTGTTTCTTGCTCGCC
CACCGATGCTCGCCAACGTAGGCGTTGAATCACGAGACCCTGCGCCCCCC
GTTCCCGAGAGAGCGTGCCCTGGACAACCTCGCCAAGTTCGCCCGCATGA
TGCCCAAACGTGCCGCCGCCGCCGGAACGGCCACCGCTGGAGGAGCTGTC
GCGGGAGCAGATGCCAACGTGCTGTCACCGACATCATCGACGCCGAAAAA
TCCGGCAGTCGCCGCCGGCAGTGTGGCTACCAGTAGTGCCTCTCACGGGA
CCCCTCAACCAGGCGTGGCAGGAAAATCAGCACGAGATCCTGCGGCCGCC
CGCGGTCGTTCTTCGCCGGCGGCGCCGGAACCAGCTGCTACACAAGGCGG
CCCTATCAGAAAGCCCTCTGCGGGGAACCCGGTCGGGGGTGCTGTTGCGG
CGGGCGGGGGTGGGATGAGACGAAGGGGCCCCGGCGAATCGGGTGTCGGG
GGTTCGATCGGAGGTCACTACGGTCCTCCGGTCGGCTCTGCGGAAGAGTT
AGACCGAATCGACAAGGATATGGCTTCTAAGCGCCGGAACGCGGAGCTCC
TTCTTGCTGGTGGTGCAGCCGGGCCGGCTGTTCCTGATGGTATGGATGAT
GTGGGGAGCAGTTTGCGCAGGCAGCTCCGTAGGTGGTGCCAACCCTTTAG
GTATCCGTGTTTCGATGTTTCGGTGTACTGTTTTGGGCTTCGATTGGGGG
CACAGTAGTCCCCCCCCTTTTTTGCATTGTCTTAATGTAGCTTGGAAATA
AGGCTAAGGCTAGGCTGACGGCCTCCCGAGGTTTTTAGCACCGGGCGGTG
ACTATTATAGCGCTGTTTTCTGGGGGGGGTTTCGCGAGGTGGACAGCTGG
CTGTTGAGGCCCGGGTCTGCGTTTTTGTTTGCAAGGGATGGGAAACACGC
GAAAGCGCGAGTAGGCTCAAAGCTGGGCTACGGAGTACCGGTGCCTGCTT
GGTAAATGCTCACCTGCTGTTCGTTTGTTCTTTTTGCTCTTGACGGCTCG
TTCGATATTTTTTGCCGTTGGCTTTCAATCTCCCACGTACTCGTACACCA
CCGTGATGTTGGCTTATATCCTCTCCCCCCCGCCCCTCCCCTCCCAACCC
ACGACGCGATGAAAACTGGCAGAGGAGAGATTCAACCCGGTGCAGCGGAT
AATGCGGGAGTATGCCGGCAAGGGCCCGTACAGCCTGCTGTACCGCCTGC
ACGAAGACAAGAGGAGAGCCAGCGTCATGATTCGAAGGGTGAACAGGTGT
GCCTAGAGGTGCTGTGGGTACGGTCGTGTGTGCCAAGGAAGCACTACATG
CTGGCCACATACATCCCGTTTGGCTGCGTCAAACGTTCAGACGCAGTACT
TGCTGACGCATCAAGCTGATAGGATGAGCTCCTTGGAAACACGTGGTGGA
GCTCACTATCCGTTGGATGTGGCGCAGACCGTCCTTATAAGTAGGATACC
CACGTTTAGATTCCCCTTGAGTGCGGCCCATCAACGCACGCGTACGAAGG
GTGCGGTTGGAACCTGTTTGTGTGTTTTGTCCAACGCCTTTCGGTGTTAA
TCTTGCTGGGGAACTCCTGCGAGCCAATCCTAACCGTGCCGACTCACGGG
GCCGCGCGTTTGTCGCTGCCGTTCACGCAGCATTCGGGGCACCTGCACCG
GACTAATTCGAGCCTTCGACAGGCACATGAACCTGCTGCTGGTCGACGTG
CAGGAGGACTACACCGCTTTCGTTCCCGACCGCGACCCGAAACCGAAACG
GCAAGAACGGCGACCACAGGGGGCACCGTCGCCGAATCCGTTACAGGGGG
GGGGAATGGGCGTCGAAGAAGAGGGCGATGGTTTACGGGGAAAGCCGGCG
GAGGTCAGGGATACCGGCTCCGCACGGGGCTTGAGTGCTGGAGTCGGGGG
TGAAGATGGGGAGGGCGGGTGGGGCACGGCGGGGAGCTTACGCTGGAGTG
GAGGTGGCAGCGTCAGCTGGGGGGGCGGTGGTGGCGGTGTAGAGGAGGTC
GTGAGATTAAGTCGTCCACATGGTACGGCAGCGGACGGAAGGAAGAGCGC
GTTTGGCGCGGAGGAGCTAGACGCTGGCGGTGGTGGTGGTGGCGATGCTT
TTAGGGGTGTTGTTGGTGGTGATCGAGGAGCAGTGGCGCCTGCCGCCGAC
TCCAGCGGCGCGAGGGTGGAATCGGTAACCGTCGAAAGCGCCGGCGCTCG
AGACGAGGTAGCATCATCTCATGTAGGAGAGACACAGTTGTTTGCTGAGA
CGACGGGTGGGCTGGGGAGTGGACAACCATTGGGTGCATTCCTTTCCGAG
GAGGGAAAAGTTGGCGACAGGGGGCAGGGAGCGAGACGGGTTATTAGAAT
AGGCGAAGTACAGCCACCGCCGCCGGGCGAAGAAGGGAGCTCCGATAGCA
ACAGGGTAGGCGGTCAGGGGCAGCACGGTAGCTTCGGACAGCCTCCTGTG
GAAGGAAGGGGTTCGGGCTTACAGGACGATGGGGCTAGTGGAGCAACCGA
CGTGAAGAAGAAGAGCAATCGGAGATCGCGGGGGAGGGGGCCTTGGACCG
GGAAGCTGGTGCCGGTAAGGAGGCGGAGGTTTCTCAAGCAGCTCATGATT
CGAGGGGACAACGTGGTGATGGTCTGGGAGTCCTCCAAGCGCTGAAAGTT
GACGATTGAAATACGTGGTGACAGACGGCATCGTTTGCTGCTGGCGGCTG
GCTGCTGTTGCTGCTGAACATGTGCAATTTTGTGTTCCGATCGATGCGTA
AGGCAGGTACTGCTGTAGAACCATCATTGCAGCAGCGATGTCAAGTGTTT
TTTGACCCCCCGTAGAGCTCCACCCAAAGGGCAACAGAGTACCCGCACGT
ACGCCCCTCTCGTTGTCTCGGATACATCCCATTTATGTCGCTCGCAAAGA
TATGGGA
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Coding sequence (CDS) from alignment at C-linearis_contig110:48906..53862+

>mRNA_C-linearis_contig110.1432.1 ID=mRNA_C-linearis_contig110.1432.1|Name=mRNA_C-linearis_contig110.1432.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3984bp|location=Sequence derived from alignment at C-linearis_contig110:48906..53862+ (Chordaria linearis ClinC8C monoicous)
ATGGAGGAACTACGGAAATCTTTGTGGTCTCGGCTGGTGGTGTTCTACTC
CGTCAACAAGAGGGACCAGCTCAACCCTGAGATGGAGGAACTACGGAAAT
CTTTGTGGTCTCGGCTGGTGGTGTTCTACTCCGTCAACAAGAGGGACCAG
CTCAACCCTGAGGTGATGGCAGAGATCGTGGCAAAGTACGGCTCGAAGGA
AAAGGAGCTGTCCGCCCGTCTCCTCAAGAAGTACCGGCGGCCGTTGCCCC
CATCGGTGCCTGCTCAAGACCTGCGGCGAGTATTACTCGAGTTTGGCATG
GAAGACCAGGACGTGGCCACCGCGGCGGCGGCTGCAGCGGCAGTGGGTAG
AACCAGCGATGAGCGGGCTAGGCGAAACCCCGCCGGCGCGGCGAGACTGG
AAGGCCAGGCCGGGCAGGGCGAGGGGCAAGCGAAGCGGCCGCCTAGAGGG
GGCGAGCTCAATTTCCGGTCGAAGTTTTTCGACCCGCTTCAGGTGATGGC
AGAGATCGTGGCAAAGTACGGCTCGAAGGAAAAGGAGCTGTCCGCCCGTC
TCCTCAAGAAGTACCGGCGGCCGTTGCCCCCATCGGTGCCTGCTCAAGAC
CTGCGGCGAGTATTACTCGAGTTTGGCATGGAAGACCAGGACGTGGCCAC
CGCGGCGGCGGCTGCAGCGGCAGTGGGTAGAACCAGCGATGAGCGGGCTA
GGCGAAACCCCGCCGGCGCGGCGAGACTGGAAGGCCAGGCCGGGCAGGGC
GAGGGGCAAGCGAAGCGGCCGCCTAGAGGGGGCGAGCTCAATTTCCGGTC
GAAGTTTTTCGACCCGCTTCAGGCGTTGAATCACGAGACCCTGCGCCCCC
CGTTCCCGAGAGAGCGTGCCCTGGACAACCTCGCCAAGTTCGCCCGCATG
ATGCCCAAACGTGCCGCCGCCGCCGGAACGGCCACCGCTGGAGGAGCTGT
CGCGGGAGCAGATGCCAACGTGCTGTCACCGACATCATCGACGCCGAAAA
ATCCGGCAGTCGCCGCCGGCAGCGTTGAATCACGAGACCCTGCGCCCCCC
GTTCCCGAGAGAGCGTGCCCTGGACAACCTCGCCAAGTTCGCCCGCATGA
TGCCCAAACGTGCCGCCGCCGCCGGAACGGCCACCGCTGGAGGAGCTGTC
GCGGGAGCAGATGCCAACGTGCTGTCACCGACATCATCGACGCCGAAAAA
TCCGGCAGTCGCCGCCGGCAGCGGCCCTATCAGAAAGCCCTCTGCGGGGA
ACCCGGTCGGGGGTGCTGTTGCGGCGGGCGGGGGTGGGATGAGACGAAGG
GGCCCCGGCGAATCGGGTGTCGGGGGTTCGATCGGAGGTCACTACGGTCC
TCCGGTCGGCTCTGCGGAAGAGTTAGACCGAATCGACAAGGATATGGCTT
CTAAGCGCCGGAACGCGGAGCTCCTTCTTGCTGGTGGTGCAGCCGGGCCG
GCTGTTCCTGATGGCGGCCCTATCAGAAAGCCCTCTGCGGGGAACCCGGT
CGGGGGTGCTGTTGCGGCGGGCGGGGGTGGGATGAGACGAAGGGGCCCCG
GCGAATCGGGTGTCGGGGGTTCGATCGGAGGTCACTACGGTCCTCCGGTC
GGCTCTGCGGAAGAGTTAGACCGAATCGACAAGGATATGGCTTCTAAGCG
CCGGAACGCGGAGCTCCTTCTTGCTGGTGGTGCAGCCGGGCCGGCTGTTC
CTGATGAGGAGAGATTCAACCCGGTGCAGCGGATAATGCGGGAGTATGCC
GGCAAGGGCCCGTACAGCCTGCTGTACCGCCTGCACGAAGACAAGAGGAG
AGCCAGCGTCATGATTCGAAGGGTGAACAGAGGAGAGATTCAACCCGGTG
CAGCGGATAATGCGGGAGTATGCCGGCAAGGGCCCGTACAGCCTGCTGTA
CCGCCTGCACGAAGACAAGAGGAGAGCCAGCGTCATGATTCGAAGGGTGA
ACAGCATTCGGGGCACCTGCACCGGACTAATTCGAGCCTTCGACAGGCAC
ATGAACCTGCTGCTGGTCGACGTGCAGGAGGACTACACCGCTTTCGTTCC
CGACCGCGACCCGAAACCGAAACGGCAAGAACGGCGACCACAGGGGGCAC
CGTCGCCGAATCCGTTACAGGGGGGGGGAATGGGCGTCGAAGAAGAGGGC
GATGGTTTACGGGGAAAGCCGGCGGAGGTCAGGGATACCGGCTCCGCACG
GGGCTTGAGTGCTGGAGTCGGGGGTGAAGATGGGGAGGGCGGGTGGGGCA
CGGCGGGGAGCTTACGCTGGAGTGGAGGTGGCAGCGTCAGCTGGGGGGGC
GGTGGTGGCGGTGTAGAGGAGGTCGTGAGATTAAGTCGTCCACATGGTAC
GGCAGCGGACGGAAGGAAGAGCGCGTTTGGCGCGGAGGAGCTAGACGCTG
GCGGTGGTGGTGGTGGCGATGCTTTTAGGGGTGTTGTTGGTGGTGATCGA
GGAGCAGTGGCGCCTGCCGCCGACTCCAGCGGCGCGAGGGTGGAATCGGT
AACCGTCGAAAGCGCCGGCGCTCGAGACGAGGTAGCATCATCTCATGTAG
GAGAGACACAGTTGTTTGCTGAGACGACGGGTGGGCTGGGGAGTGGACAA
CCATTGGGTGCATTCCTTTCCGAGGAGGGAAAAGTTGGCGACAGGGGGCA
GGGAGCGAGACGGGTTATTAGAATAGGCGAAGTACAGCCACCGCCGCCGG
GCGAAGAAGGGAGCTCCGATAGCAACAGGGTAGGCGGTCAGGGGCAGCAC
GGTAGCTTCGGACAGCCTCCTGTGGAAGGAAGGGGTTCGGGCTTACAGGA
CGATGGGGCTAGTGGAGCAACCGACGTGAAGAAGAAGAGCAATCGGAGAT
CGCGGGGGAGGGGGCCTTGGACCGGGAAGCTGGTGCCGGTAAGGAGGCGG
AGGTTTCTCAAGCAGCTCATGATTCGAGGGGACAACGTGGTGATGGTCTG
GGAGTCCTCCAAGCGCTGACATTCGGGGCACCTGCACCGGACTAATTCGA
GCCTTCGACAGGCACATGAACCTGCTGCTGGTCGACGTGCAGGAGGACTA
CACCGCTTTCGTTCCCGACCGCGACCCGAAACCGAAACGGCAAGAACGGC
GACCACAGGGGGCACCGTCGCCGAATCCGTTACAGGGGGGGGGAATGGGC
GTCGAAGAAGAGGGCGATGGTTTACGGGGAAAGCCGGCGGAGGTCAGGGA
TACCGGCTCCGCACGGGGCTTGAGTGCTGGAGTCGGGGGTGAAGATGGGG
AGGGCGGGTGGGGCACGGCGGGGAGCTTACGCTGGAGTGGAGGTGGCAGC
GTCAGCTGGGGGGGCGGTGGTGGCGGTGTAGAGGAGGTCGTGAGATTAAG
TCGTCCACATGGTACGGCAGCGGACGGAAGGAAGAGCGCGTTTGGCGCGG
AGGAGCTAGACGCTGGCGGTGGTGGTGGTGGCGATGCTTTTAGGGGTGTT
GTTGGTGGTGATCGAGGAGCAGTGGCGCCTGCCGCCGACTCCAGCGGCGC
GAGGGTGGAATCGGTAACCGTCGAAAGCGCCGGCGCTCGAGACGAGGTAG
CATCATCTCATGTAGGAGAGACACAGTTGTTTGCTGAGACGACGGGTGGG
CTGGGGAGTGGACAACCATTGGGTGCATTCCTTTCCGAGGAGGGAAAAGT
TGGCGACAGGGGGCAGGGAGCGAGACGGGTTATTAGAATAGGCGAAGTAC
AGCCACCGCCGCCGGGCGAAGAAGGGAGCTCCGATAGCAACAGGGTAGGC
GGTCAGGGGCAGCACGGTAGCTTCGGACAGCCTCCTGTGGAAGGAAGGGG
TTCGGGCTTACAGGACGATGGGGCTAGTGGAGCAACCGACGTGAAGAAGA
AGAGCAATCGGAGATCGCGGGGGAGGGGGCCTTGGACCGGGAAGCTGGTG
CCGGTAAGGAGGCGGAGGTTTCTCAAGCAGCTCATGATTCGAGGGGACAA
CGTGGTGATGGTCTGGGAGTCCTCCAAGCGCTGA
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