prot_C-linearis_contig11.1415.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig11.1415.1
Unique Nameprot_C-linearis_contig11.1415.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length246
Homology
BLAST of mRNA_C-linearis_contig11.1415.1 vs. uniprot
Match: D8LKH2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKH2_ECTSI)

HSP 1 Score: 309 bits (791), Expect = 4.960e-100
Identity = 180/248 (72.58%), Postives = 193/248 (77.82%), Query Frame = 0
Query:    1 MSWAEPADDMDTLSELPPAS--DSVGKVSNLSRGPSAGGGRSSKSARRVGAGGVSKSERRLLMEAKAGVGAAIAEDRQERLIAKRRARKCVRFLYYGIKVVGVVACGFTAGLNLALVYMRRDSRLQNRLVRSYLVAFGIGGVLAELDTPFAKANFRALQKWWFKAPFYVFMAWLCFDPAHCRGTAWFYLELASFMALQAMAVLAVVLNVCLREVLERSGALGKRRGKXXXXXXXXXXXXXXGAIGSSS 246
            MSWAEPAD MDTLSELP  S   S G+   LSR  S+ G RS+KS  R G+GG SKSERRLLMEAKAGVGAAIAEDRQERLIAKRRAR+ VR LYY +KVVGV AC +T+GLN  LVYMR D  LQ+RLVRSYLV FG+GGVLAELDTPFAKANFRALQKWWFKAPFYVFMAWLCFD +  RGT WF LELASF+ALQ M  +AVVLNVCLREVLERSGA GKRRGK                I SSS
Sbjct:    1 MSWAEPAD-MDTLSELPRQSMVGSSGRPPKLSRTTSSVG-RSAKS--RGGSGGASKSERRLLMEAKAGVGAAIAEDRQERLIAKRRARRIVRVLYYAMKVVGVAACVYTSGLNATLVYMRPDFGLQDRLVRSYLVLFGVGGVLAELDTPFAKANFRALQKWWFKAPFYVFMAWLCFDASLSRGTVWFPLELASFVALQTMGAMAVVLNVCLREVLERSGAFGKRRGKKSASSSSRRLRRGASGINSSS 244          
BLAST of mRNA_C-linearis_contig11.1415.1 vs. uniprot
Match: A0A6H5JH79_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH79_9PHAE)

HSP 1 Score: 233 bits (594), Expect = 2.950e-74
Identity = 123/177 (69.49%), Postives = 135/177 (76.27%), Query Frame = 0
Query:   74 DRQERLIAKRRARKCVRFLYYGIKVVGVVACGFTAGLNLALVYMR----RDSRLQNRLVRSYLVAFGIGGVLAELDTPFAKANFRALQKWWFKAPFYVFMAWLCFDPAHCRGTAWFYLELASFMALQAMAVLAVVLNVCLREVLERSGALGKRRGKXXXXXXXXXXXXXXGAIGSSS 246
            DRQERL AKRRAR+ VR LYY +KVVGV AC +T+GLN  LVYMR    R+    + LVRSYLV FG+GGVLAELDTPFAKANFRALQKWWFKAPFYVFMAWLCFD +  RGT WF LELASF+ALQ + V+A+VLNVCLREVLERSGALGKRRGK                I SSS
Sbjct:    8 DRQERLAAKRRARRIVRVLYYAMKVVGVGACFYTSGLNATLVYMRPDFGRELLASSLLVRSYLVLFGVGGVLAELDTPFAKANFRALQKWWFKAPFYVFMAWLCFDASLSRGTVWFSLELASFVALQTVGVMALVLNVCLREVLERSGALGKRRGKKSASSSSRRLRRGASGINSSS 184          
BLAST of mRNA_C-linearis_contig11.1415.1 vs. uniprot
Match: A0A835YSD9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSD9_9STRA)

HSP 1 Score: 102 bits (254), Expect = 3.100e-21
Identity = 64/158 (40.51%), Postives = 89/158 (56.33%), Query Frame = 0
Query:   70 AIAEDRQERLIAKRRARKCVRFLYYGIKVVGVVACGFTAGLNLALVYMRRDSRLQNRLVRSYLVAFGIGGVLAELDTPFAKANFRALQKWWFKAPFYVFMAW--LCFDPAHCRGTAWFYLELASFMALQAMAVLAVVLNVCLREVLERSGALGKRRGK 225
            A+ E  +E  IA+RRAR CV + Y+ +K   V         N+ ++  R +  L+ R VR YL+ F +  +LAELDT FA+ NFRALQKWW KA FYVF+    L + P    G     L+LA+   L A+A+  V L  CLR +LE++     R+ K
Sbjct:   73 AMEEVAREAAIARRRARACVTYSYWVLKSTAVATHVLMITTNVWVLARRHEPDLRERAVRGYLIPFSLAALLAELDTRFARDNFRALQKWWCKALFYVFLGTVNLGWTPLGALGRPLTRLQLATAGVLCALALGNVALYTCLRRLLEKTVLRKLRKAK 230          
BLAST of mRNA_C-linearis_contig11.1415.1 vs. uniprot
Match: A0A6H5JBH1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBH1_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 6.200e-10
Identity = 52/75 (69.33%), Postives = 56/75 (74.67%), Query Frame = 0
Query:    1 MSWAEPADDMDTLSELPPAS--DSVGKVSNLSRGPSAGGGRSSKSARRVGAGGVSKSERRLLMEAKAGVGAAIAE 73
            MSWAEPAD MDTLSELP  S   S G+   LSR  S+ G RS+KS  R G+ G SKSERRLLMEAKAGVGAAIAE
Sbjct:    1 MSWAEPAD-MDTLSELPRQSMVGSSGRPPKLSRTASSVG-RSAKS--RGGSRGASKSERRLLMEAKAGVGAAIAE 71          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1415.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LKH2_ECTSI4.960e-10072.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JH79_9PHAE2.950e-7469.49Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A835YSD9_9STRA3.100e-2140.51Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5JBH1_9PHAE6.200e-1069.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 193..213
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 128..144
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 117..127
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 188..192
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 91..116
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 165..187
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..90
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 145..164
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 214..246
NoneNo IPR availableTMHMMTMhelixcoord: 127..149
NoneNo IPR availableTMHMMTMhelixcoord: 183..205
NoneNo IPR availableTMHMMTMhelixcoord: 92..114

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:3646468..3648852 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1415.1mRNA_C-linearis_contig11.1415.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig11 3646468..3649140 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig11.1415.1 ID=prot_C-linearis_contig11.1415.1|Name=mRNA_C-linearis_contig11.1415.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=246bp
MSWAEPADDMDTLSELPPASDSVGKVSNLSRGPSAGGGRSSKSARRVGAG
GVSKSERRLLMEAKAGVGAAIAEDRQERLIAKRRARKCVRFLYYGIKVVG
VVACGFTAGLNLALVYMRRDSRLQNRLVRSYLVAFGIGGVLAELDTPFAK
ANFRALQKWWFKAPFYVFMAWLCFDPAHCRGTAWFYLELASFMALQAMAV
LAVVLNVCLREVLERSGALGKRRGKKSSSSSSSRRRRRRGAIGSSS
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