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Homology
BLAST of mRNA_C-linearis_contig11.1415.1 vs. uniprot
Match: D8LKH2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKH2_ECTSI) HSP 1 Score: 309 bits (792), Expect = 1.210e-98 Identity = 180/248 (72.58%), Postives = 193/248 (77.82%), Query Frame = 1
Query: 289 MSWAEPADDMDTLSELPPAS--DSVGKVSNLSRGPSAGGGRSSKSARRVGAGGVSKSERRLLMEAKAGVGAAIAEDRQERLIAKRRARKCVRFLYYGIKVVGVVACGFTAGLNLALVYMRRDSRLQNRLVRSYLVAFGIGGVLAELDTPFAKANFRALQKWWFKAPFYVFMAWLCFDPAHCRGTAWFYLELASFMALQAMAVLAVVLNVCLREVLERSGALGKRRGKXXXXXXXXXXXXXXGAIGSSS 1026
MSWAEPAD MDTLSELP S S G+ LSR S+ G RS+KS R G+GG SKSERRLLMEAKAGVGAAIAEDRQERLIAKRRAR+ VR LYY +KVVGV AC +T+GLN LVYMR D LQ+RLVRSYLV FG+GGVLAELDTPFAKANFRALQKWWFKAPFYVFMAWLCFD + RGT WF LELASF+ALQ M +AVVLNVCLREVLERSGA GKRRGK I SSS
Sbjct: 1 MSWAEPAD-MDTLSELPRQSMVGSSGRPPKLSRTTSSVG-RSAKS--RGGSGGASKSERRLLMEAKAGVGAAIAEDRQERLIAKRRARRIVRVLYYAMKVVGVAACVYTSGLNATLVYMRPDFGLQDRLVRSYLVLFGVGGVLAELDTPFAKANFRALQKWWFKAPFYVFMAWLCFDASLSRGTVWFPLELASFVALQTMGAMAVVLNVCLREVLERSGAFGKRRGKKSASSSSRRLRRGASGINSSS 244
BLAST of mRNA_C-linearis_contig11.1415.1 vs. uniprot
Match: A0A6H5JH79_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH79_9PHAE) HSP 1 Score: 233 bits (594), Expect = 7.930e-73 Identity = 123/177 (69.49%), Postives = 135/177 (76.27%), Query Frame = 1
Query: 508 DRQERLIAKRRARKCVRFLYYGIKVVGVVACGFTAGLNLALVYMR----RDSRLQNRLVRSYLVAFGIGGVLAELDTPFAKANFRALQKWWFKAPFYVFMAWLCFDPAHCRGTAWFYLELASFMALQAMAVLAVVLNVCLREVLERSGALGKRRGKXXXXXXXXXXXXXXGAIGSSS 1026
DRQERL AKRRAR+ VR LYY +KVVGV AC +T+GLN LVYMR R+ + LVRSYLV FG+GGVLAELDTPFAKANFRALQKWWFKAPFYVFMAWLCFD + RGT WF LELASF+ALQ + V+A+VLNVCLREVLERSGALGKRRGK I SSS
Sbjct: 8 DRQERLAAKRRARRIVRVLYYAMKVVGVGACFYTSGLNATLVYMRPDFGRELLASSLLVRSYLVLFGVGGVLAELDTPFAKANFRALQKWWFKAPFYVFMAWLCFDASLSRGTVWFSLELASFVALQTVGVMALVLNVCLREVLERSGALGKRRGKKSASSSSRRLRRGASGINSSS 184
BLAST of mRNA_C-linearis_contig11.1415.1 vs. uniprot
Match: A0A835YSD9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSD9_9STRA) HSP 1 Score: 102 bits (254), Expect = 2.530e-20 Identity = 64/158 (40.51%), Postives = 89/158 (56.33%), Query Frame = 1
Query: 496 AIAEDRQERLIAKRRARKCVRFLYYGIKVVGVVACGFTAGLNLALVYMRRDSRLQNRLVRSYLVAFGIGGVLAELDTPFAKANFRALQKWWFKAPFYVFMAW--LCFDPAHCRGTAWFYLELASFMALQAMAVLAVVLNVCLREVLERSGALGKRRGK 963
A+ E +E IA+RRAR CV + Y+ +K V N+ ++ R + L+ R VR YL+ F + +LAELDT FA+ NFRALQKWW KA FYVF+ L + P G L+LA+ L A+A+ V L CLR +LE++ R+ K
Sbjct: 73 AMEEVAREAAIARRRARACVTYSYWVLKSTAVATHVLMITTNVWVLARRHEPDLRERAVRGYLIPFSLAALLAELDTRFARDNFRALQKWWCKALFYVFLGTVNLGWTPLGALGRPLTRLQLATAGVLCALALGNVALYTCLRRLLEKTVLRKLRKAK 230
BLAST of mRNA_C-linearis_contig11.1415.1 vs. uniprot
Match: A0A6H5JBH1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBH1_9PHAE) HSP 1 Score: 64.3 bits (155), Expect = 1.110e-9 Identity = 52/75 (69.33%), Postives = 56/75 (74.67%), Query Frame = 1
Query: 289 MSWAEPADDMDTLSELPPAS--DSVGKVSNLSRGPSAGGGRSSKSARRVGAGGVSKSERRLLMEAKAGVGAAIAE 507
MSWAEPAD MDTLSELP S S G+ LSR S+ G RS+KS R G+ G SKSERRLLMEAKAGVGAAIAE
Sbjct: 1 MSWAEPAD-MDTLSELPRQSMVGSSGRPPKLSRTASSVG-RSAKS--RGGSRGASKSERRLLMEAKAGVGAAIAE 71
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-16_002950.1 |
| Exons | 4 |
| Model size | 1027 |
| Cds size | 738 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927471.0123599-CDS-C-linearis_contig11:3646467..3646702 | 1622927471.0123599-CDS-C-linearis_contig11:3646467..3646702 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig11 3646468..3646702 - |
| 1690879720.4263208-CDS-C-linearis_contig11:3646467..3646702 | 1690879720.4263208-CDS-C-linearis_contig11:3646467..3646702 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig11 3646468..3646702 - |
| 1622927471.0264137-CDS-C-linearis_contig11:3647189..3647325 | 1622927471.0264137-CDS-C-linearis_contig11:3647189..3647325 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig11 3647190..3647325 - |
| 1690879720.4364634-CDS-C-linearis_contig11:3647189..3647325 | 1690879720.4364634-CDS-C-linearis_contig11:3647189..3647325 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig11 3647190..3647325 - |
| 1622927471.0387495-CDS-C-linearis_contig11:3647669..3647817 | 1622927471.0387495-CDS-C-linearis_contig11:3647669..3647817 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig11 3647670..3647817 - |
| 1690879720.4477742-CDS-C-linearis_contig11:3647669..3647817 | 1690879720.4477742-CDS-C-linearis_contig11:3647669..3647817 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig11 3647670..3647817 - |
| 1622927471.0511904-CDS-C-linearis_contig11:3648633..3648852 | 1622927471.0511904-CDS-C-linearis_contig11:3648633..3648852 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig11 3648634..3648852 - |
| 1690879720.46035-CDS-C-linearis_contig11:3648633..3648852 | 1690879720.46035-CDS-C-linearis_contig11:3648633..3648852 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig11 3648634..3648852 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927471.0667298-UTR-C-linearis_contig11:3648852..3649140 | 1622927471.0667298-UTR-C-linearis_contig11:3648852..3649140 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig11 3648853..3649140 - |
| 1690879720.4703114-UTR-C-linearis_contig11:3648852..3649140 | 1690879720.4703114-UTR-C-linearis_contig11:3648852..3649140 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig11 3648853..3649140 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig11.1415.1 >prot_C-linearis_contig11.1415.1 ID=prot_C-linearis_contig11.1415.1|Name=mRNA_C-linearis_contig11.1415.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=246bp
MSWAEPADDMDTLSELPPASDSVGKVSNLSRGPSAGGGRSSKSARRVGAG
GVSKSERRLLMEAKAGVGAAIAEDRQERLIAKRRARKCVRFLYYGIKVVG
VVACGFTAGLNLALVYMRRDSRLQNRLVRSYLVAFGIGGVLAELDTPFAK
ANFRALQKWWFKAPFYVFMAWLCFDPAHCRGTAWFYLELASFMALQAMAV
LAVVLNVCLREVLERSGALGKRRGKKSSSSSSSRRRRRRGAIGSSS back to topmRNA from alignment at C-linearis_contig11:3646468..3649140- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig11.1415.1 ID=mRNA_C-linearis_contig11.1415.1|Name=mRNA_C-linearis_contig11.1415.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2673bp|location=Sequence derived from alignment at C-linearis_contig11:3646468..3649140- (Chordaria linearis ClinC8C monoicous)
CGAGAAGCAAAACACGAACTGGAGAGCAGTGTTTGCCATCTCGCGCGGCT
CGCTGGGTGAGGGAGCTACTCAGCTCTCCACGCTTGCCCCTCAGCATTGC
AGGCTTGCAGCGTCGCAGACGACATTTCGGTGCCGTACCTCTGAACGTTG
GTCAACGGAAATCAGCACTGGTTCATACCACGTCGATCCGACAGTTTGCA
TTGTCATCCCGCTGCTGGTGTTGTCTCACCAAAACCCAACAGATTCAAGA
GACCGCTCTGCGACGGCTTCGACTCGAACGCTCGCGAGATGTCGTGGGCA
GAGCCCGCCGACGACATGGACACTCTGAGCGAGCTGCCCCCTGCTTCTGA
CTCCGTGGGAAAGGTGTCCAACCTGTCTCGAGGGCCTTCGGCGGGCGGCG
GGCGGTCTTCGAAGTCGGCGAGGAGGGTCGGAGCCGGGGGCGTCTCCAAG
TCGGAACGGAGGCTGCTGATGGAGGCGAAAGCTGGGGTTGGGGCTGCCAT
AGCAGAGGTGTGCGATCCGATCATGGGCGGTCCTGCAACGGTCCTTGTGC
TGGTGTTGGATGTCAAAACAATAAAAATGGATGGAAGAACAGATACGGAG
ACATCGCAGACAGCGACTAAGGTGGTAGTACATACGAAGTACAACCCATG
GGGACGAAGTTTACCGAAAGAGAGGGGAGAGTTTGGGAGGGCTGTTGCCA
TGTTCTACCCTAGAAAATAGGTAAGAAAACGCATAAACGGTCGCGTATAG
AGTGCGGGAGTTTTGCACCCCAGCAGGAACAGCAGTCGCGGCTGCCGCCG
TAGTTCCGACAAAGTGTACAGCATTCAGCCTGCTGAAGAAGCCGACCGTA
ACGGAAGCTGAGGTACGGGACGATCGCTGGTTGGGGGTTGGATACATGCA
CCCGCCGAAGTCCCCAATCACCCTCCGAGACTCAGGCCCGGTCGTGTTGC
GTCGTGAGCAGCGTCGTTTCCCTATCATGCAGCAGTGTTAACCACACAGC
ACCAATAAATCCCTCGCACCTGTCTCCTTTCCATCGCTGGATTCAACTGC
TATGCTGATGGTAAGCATGTCTACTCTCGACTCCCACGCCCGTGCAGCAA
TCAAGCATCAAACGGCATTCTAGGTTGGTACAACAGCAGTAGTACGGCCA
AAGCGCTAAATCTGCCGTAGTCGGTGCCGTTTGAGAGCAGCTATCTCTCG
CCCCACCGCTTCTGTTTGTGAGGACCTGCACGTTAACATGTTCCCATACC
CCATCGGCGTCGGGGCTGCTTTGGTTTTCGTGTGGTCGTTTGGATGGATG
GACGGGCGGCGGGCGGGGAGCAGGACAGACAGGAGCGTCTGATCGCGAAG
CGAAGAGCCCGGAAGTGCGTCCGGTTCCTGTACTACGGCATCAAGGTGGT
CGGGGTCGTGGCTTGCGGCTTCACGGCGGGGCTTAACCTCGCCCTCGTCT
ACATGAGACGGGACTCCCGACGTGAGACGGATTCAAATTTGCTGTGCATA
CCCTAATTTACAGAGTAGATCTCGGTCTTCTTCTTCTTCTTCTTCTTCTT
CTTCTTCCTCCTCTTATTCGTATGTAGCAGCTGTTGCTACTGTTGTTGTA
ATATGTGTGCGTGACTGCTGTCCGCACGGCCAGGCTGCTTTTCTCCGTGC
TTTCCATTTGATGGTCTGCCTCTTTCGCCTGGGTTTGCTGTTGTCCTGTT
CCCCCGTTTTCATCCTTGTGCTGCTCTTATATTCCTGTGTGTTTCGTGCC
ATCTTGTTTGTTTGCGGCGGTTTTTTTGCCCTGGTCTTGGGTGGCTGCTA
CCGCCGCGCGCTCAGTTCAGAACAGGCTGGTGCGCTCGTATCTCGTGGCG
TTTGGCATCGGGGGCGTGCTCGCGGAGCTGGACACGCCTTTCGCCAAGGC
GAACTTTCGGGCGCTCCAGAAGTGGTGGTTCAAGGCTCCCTTCTATGTCT
TGTGAGTCCGTTTGGTGGTCTTTTGGTTGCGATAGCGAAGAAAAAAAGAA
GCTTGCTAGGAATGTCCTGTACTGGTGTGCGACTGGTGGTGGTGTTTTTG
GAGGGCTCCTTTTCGGGCGCTTAAGAGGGGGAAAGCAGGCGGGGCATATC
TGACAAACAGTAAGCGAGTTCGCGGCATCTCTTGAGGGAAGAGGGGGGCA
TGGTACAGCCACGACAGGACCATGCCCGTTTCCCCTCGCGAGGTGCCTGT
TCAGGCCTTTCAGCGATCCCAGCAGAACCCCCCTAACCAGCCAATGGCCC
GCACCTTGCCTCGTTCCTCCTTCAGCCTCCCCGTACACTCAAACCTTCGA
CCCCTTGGGTCCACTGCCAAATCCGAAACACGAAAAACACTCACACGCGC
ACACGCGGCGACGTTGGCGTTTACGTTTCAATTTTATTTTTTTAACCACC
GCCACCGCCACCCCACGCGTGCATACATATATACACAGCATGGCCTGGCT
GTGCTTCGACCCCGCGCACTGCCGAGGCACGGCGTGGTTCTACCTCGAGC
TGGCGTCGTTCATGGCCCTCCAGGCCATGGCCGTCTTGGCCGTCGTGCTC
AACGTGTGCCTGAGGGAGGTGCTGGAGAGGAGCGGAGCTCTCGGGAAGCG
GCGCGGCAAGAAATCATCGTCGTCGTCGTCGTCCAGGCGGCGGCGGCGGC
GGGGGGCGATCGGCTCCTCCTCG back to topCoding sequence (CDS) from alignment at C-linearis_contig11:3646468..3649140- >mRNA_C-linearis_contig11.1415.1 ID=mRNA_C-linearis_contig11.1415.1|Name=mRNA_C-linearis_contig11.1415.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1476bp|location=Sequence derived from alignment at C-linearis_contig11:3646468..3649140- (Chordaria linearis ClinC8C monoicous)
ATGTCGTGGGCAGAGCCCGCCGACGACATGGACACTCTGAGCGAGCTGCC
CCCTGCTTCTGACTCCGTGGGAAAGGTGTCCAACCTGTCTCGAGGGCCTT
CGGCGGGCGGCGGGCGGTCTTCGAAGTCGGCGAGGAGGGTCGGAGCCGGG
GGCGTCTCCAAGTCGGAACGGAGGCTGCTGATGGAGGCGAAAGCTGGGGT
TGGGGCTGCCATAGCAGAGATGTCGTGGGCAGAGCCCGCCGACGACATGG
ACACTCTGAGCGAGCTGCCCCCTGCTTCTGACTCCGTGGGAAAGGTGTCC
AACCTGTCTCGAGGGCCTTCGGCGGGCGGCGGGCGGTCTTCGAAGTCGGC
GAGGAGGGTCGGAGCCGGGGGCGTCTCCAAGTCGGAACGGAGGCTGCTGA
TGGAGGCGAAAGCTGGGGTTGGGGCTGCCATAGCAGAGGACAGACAGGAG
CGTCTGATCGCGAAGCGAAGAGCCCGGAAGTGCGTCCGGTTCCTGTACTA
CGGCATCAAGGTGGTCGGGGTCGTGGCTTGCGGCTTCACGGCGGGGCTTA
ACCTCGCCCTCGTCTACATGAGACGGGACTCCCGACGACAGACAGGAGCG
TCTGATCGCGAAGCGAAGAGCCCGGAAGTGCGTCCGGTTCCTGTACTACG
GCATCAAGGTGGTCGGGGTCGTGGCTTGCGGCTTCACGGCGGGGCTTAAC
CTCGCCCTCGTCTACATGAGACGGGACTCCCGACTTCAGAACAGGCTGGT
GCGCTCGTATCTCGTGGCGTTTGGCATCGGGGGCGTGCTCGCGGAGCTGG
ACACGCCTTTCGCCAAGGCGAACTTTCGGGCGCTCCAGAAGTGGTGGTTC
AAGGCTCCCTTCTATGTCTTTTCAGAACAGGCTGGTGCGCTCGTATCTCG
TGGCGTTTGGCATCGGGGGCGTGCTCGCGGAGCTGGACACGCCTTTCGCC
AAGGCGAACTTTCGGGCGCTCCAGAAGTGGTGGTTCAAGGCTCCCTTCTA
TGTCTTCATGGCCTGGCTGTGCTTCGACCCCGCGCACTGCCGAGGCACGG
CGTGGTTCTACCTCGAGCTGGCGTCGTTCATGGCCCTCCAGGCCATGGCC
GTCTTGGCCGTCGTGCTCAACGTGTGCCTGAGGGAGGTGCTGGAGAGGAG
CGGAGCTCTCGGGAAGCGGCGCGGCAAGAAATCATCGTCGTCGTCGTCGT
CCAGGCGGCGGCGGCGGCGGGGGGCGATCGGCTCCTCCTCGCATGGCCTG
GCTGTGCTTCGACCCCGCGCACTGCCGAGGCACGGCGTGGTTCTACCTCG
AGCTGGCGTCGTTCATGGCCCTCCAGGCCATGGCCGTCTTGGCCGTCGTG
CTCAACGTGTGCCTGAGGGAGGTGCTGGAGAGGAGCGGAGCTCTCGGGAA
GCGGCGCGGCAAGAAATCATCGTCGTCGTCGTCGTCCAGGCGGCGGCGGC
GGCGGGGGGCGATCGGCTCCTCCTCG back to top
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