prot_C-linearis_contig11.1381.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig11.1381.1
Unique Nameprot_C-linearis_contig11.1381.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length557
Homology
BLAST of mRNA_C-linearis_contig11.1381.1 vs. uniprot
Match: A0A6H5KZW3_9PHAE (Omp85 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZW3_9PHAE)

HSP 1 Score: 507 bits (1305), Expect = 1.370e-166
Identity = 269/373 (72.12%), Postives = 309/373 (82.84%), Query Frame = 0
Query:  178 SAGDEGSSDGRDPLVLAGVGSGMGAALDGLKEAMRNLRMPWARKDSSGEEGQDGDGEASSESSVEQQLPEVLVADVVVDESVIPRDVLASAAVKSGLLGREASEARIQACAKILNQWYQYEGYILSGVSNAVISPNGTISFSVNEPVVSKLEPVQLLYYKPANIKDPASGLVQVEKGKTKAKTIARGLGLEGGEHFKVDADRWRGVLGSGLFNGAQLSGAHQNAADKGFTLDINVQERRSVVFEPGVTKTLFDSNWAGEICFEEKNVLGRNGMLGLDLRRSMASPFTSFSVRVGNNRFGQLGAWQASLFRDSISSASASGLGRG-TLGGGYANSSMGPAASAPVFSTASPRGVPRDIGLLARSISGAQHRRAV 549
            SAGDEG  DG+ PLVLA  G  + A L+ +K+AMR ++MPW RKD S EEGQ+G  E +SE   E++L +VLVADVVVD S+IPRDVL SAAVKSGLLGREAS  RIQACA+IL++WYQYEG+ILSGV NA ISPNGT++FSVNEPVVS +EP+QL YYK A+I+DP SGLVQVEKGKTKA TIA+GLGL+GGEHFK+DA RWRGVLGSGLF+G QLSGAHQNA DKG TLDINV+ER SVVF PGVTKTLFDSNWAGEI FEE NVLGRNG++GL L RSM+SPFTSFS+R+GNNRFGQ G WQ S FRD +  A  SG  RG     GYAN+++GPA+SAP FSTASP GVPRD+ +LARSI GAQH R V
Sbjct:  165 SAGDEGFGDGQ-PLVLAAAGGSLAAFLNEVKDAMRQVKMPWDRKDKSSEEGQEGVAETASEEDPEKELSKVLVADVVVDNSIIPRDVLTSAAVKSGLLGREASVERIQACARILSEWYQYEGHILSGVVNAAISPNGTVAFSVNEPVVSGVEPIQLSYYKTADIRDPNSGLVQVEKGKTKASTIAKGLGLKGGEHFKLDAQRWRGVLGSGLFSGVQLSGAHQNAEDKGMTLDINVEERSSVVFAPGVTKTLFDSNWAGEISFEETNVLGRNGVMGLKLHRSMSSPFTSFSLRMGNNRFGQPGGWQLSFFRDCL--APYSGFARGGXXXXGYANNALGPASSAPDFSTASPAGVPRDLSMLARSIQGAQHGRGV 534          
BLAST of mRNA_C-linearis_contig11.1381.1 vs. uniprot
Match: D8LKK3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKK3_ECTSI)

HSP 1 Score: 466 bits (1199), Expect = 3.620e-153
Identity = 244/340 (71.76%), Postives = 279/340 (82.06%), Query Frame = 0
Query:  211 MRNLRMPWARKDSSGEEGQDGDGEASSESSVEQQLPEVLVADVVVDESVIPRDVLASAAVKSGLLGREASEARIQACAKILNQWYQYEGYILSGVSNAVISPNGTISFSVNEPVVSKLEPVQLLYYKPANIKDPASGLVQVEKGKTKAKTIARGLGLEGGEHFKVDADRWRGVLGSGLFNGAQLSGAHQNAADKGFTLDINVQERRSVVFEPGVTKTLFDSNWAGEICFEEKNVLGRNGMLGLDLRRSMASPFTSFSVRVGNNRFGQLGAWQASLFRDSISSASASGLGRG-TLGGGYANSSMGPAASAPVFSTASPRGVPRDIGLLARSISGAQHRRAV 549
            MR  +MPW RKD S  EGQ+G  E +SE   E++L +VLVADVVVD S+IPRDVLASAAVKSGLLGREAS  RIQACA+IL++WYQYEG+I SGV NA ISPNGT++FSVNEPVVS +EP+QL YYK A+I+DP SGL QVEKGK K     +GLGL+GG+HFK+DA RWRGVLGSGLF+G QLSGAHQNA DKG TLDINV+ER SVVF PGVTKTLFDSNWAGEI FEEKNVLGRNG++GL L RSM+SPFTSFS+R+GNNRFGQ G WQ S FRD +  A  SG  RG     GYAN+++GPA+SAP FSTASP GVPRD+ +LARSI GAQH R V
Sbjct:    1 MRQFKMPWDRKDKSSVEGQEGVAETASEEDPEKELSKVLVADVVVDNSIIPRDVLASAAVKSGLLGREASVERIQACARILSEWYQYEGHIFSGVVNAAISPNGTVAFSVNEPVVSGVEPIQLSYYKTADIRDPKSGLFQVEKGKIKVSPFPKGLGLKGGDHFKLDAQRWRGVLGSGLFSGVQLSGAHQNAEDKGMTLDINVEERNSVVFAPGVTKTLFDSNWAGEISFEEKNVLGRNGVMGLKLHRSMSSPFTSFSLRMGNNRFGQPGGWQLSFFRDCL--APYSGFARGGXXXXGYANNALGPASSAPDFSTASPAGVPRDLSMLARSIQGAQHGRGV 338          
BLAST of mRNA_C-linearis_contig11.1381.1 vs. uniprot
Match: A0A835Z3Q2_9STRA (Omp85 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3Q2_9STRA)

HSP 1 Score: 224 bits (572), Expect = 1.300e-60
Identity = 127/304 (41.78%), Postives = 190/304 (62.50%), Query Frame = 0
Query:  242 EQQLPEVLVADVVVDES-VIPRDVLASAAVKSGLLGREASEARIQACAKILNQWYQYEGYILSGVSNAVISPNGTISFSVNEPVVSKLEPVQLLYYKPANIKDPASGLVQV--EKGKTKAKTIARGLGLEGGEHFKVDADRWRGVLGSGLFNGAQLSGAHQNAAD--KGFTLDINVQERRSVVFEPGVTKTLFDSNWAGEICFEEKNVLGRNGMLGLDLRRSMASPFTSFSVRVGNNRFGQLGAWQASLFRDSISSASASGLGRGTLGGGYANSSMGPAASAPVFSTASPRGVPRDIGLLARSI 540
            E+ +P V+V DVVV+ + V+P++VL +A+V+SGLLG    + R+ AC +I+N WY  +GY+LS V+ A + PNG +   V EP+VS+ EP+ L++ +  N  DP S   QV   KGKT+A T++R LGL  G+  ++D  R+  +  S LF+   LSGA +   +  +  T+ + V ERRSVVFEPG+TKTLF++ WAGE+ FE++NV G N ++G++ RR + +  TS+ VR+GN+RFG+LGAW A+LFR+  S +        TLG                      +GV RD+ +L RS+
Sbjct:  129 EETVPTVVVQDVVVNGTQVLPKEVLNTASVESGLLGAPFDQKRLAACIRIINGWYNSQGYVLSTVAEASVFPNGAVVLQVQEPIVSQKEPISLVFIQKVNATDPESAYEQVPNNKGKTRACTVSRALGLRKGKPLQIDLKRFNSLRASPLFDVVALSGAKKAPGEDEQSATVVLMVSERRSVVFEPGITKTLFNAQWAGEVAFEDRNVAGLNYVVGVEARRGVGASHTSYRVRLGNDRFGRLGAWSAALFREPTSDSQPDHHSGQTLG----------------------QGVSRDVSMLYRSL 410          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1381.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KZW3_9PHAE1.370e-16672.12Omp85 domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LKK3_ECTSI3.620e-15371.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z3Q2_9STRA1.300e-6041.78Omp85 domain-containing protein n=1 Tax=Tribonema ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.10.20.310coord: 246..325
e-value: 1.7E-6
score: 29.7
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..32
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..54
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 55..557
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 49..54
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 33..48
NoneNo IPR availableTMHMMTMhelixcoord: 33..55

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:3312093..3318783 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1381.1mRNA_C-linearis_contig11.1381.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig11 3312093..3318783 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig11.1381.1 ID=prot_C-linearis_contig11.1381.1|Name=mRNA_C-linearis_contig11.1381.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=557bp
MPLCARLPRCLHPKLSSLFSPSVFMMARDRARLLVPLLFPLALAAVVLVG
VVDAFLPFSPASYNINVKLSQHVPAAASAPPGGKLRPVASERNSRPPAAG
SAMVIKPAKRARNSVPPSCSPAAARGRCSASSIRRVFCGAAGLLSLDDDD
GGDQGGGRGKGEGNGNGNGNGGDGDESSAGDEGSSDGRDPLVLAGVGSGM
GAALDGLKEAMRNLRMPWARKDSSGEEGQDGDGEASSESSVEQQLPEVLV
ADVVVDESVIPRDVLASAAVKSGLLGREASEARIQACAKILNQWYQYEGY
ILSGVSNAVISPNGTISFSVNEPVVSKLEPVQLLYYKPANIKDPASGLVQ
VEKGKTKAKTIARGLGLEGGEHFKVDADRWRGVLGSGLFNGAQLSGAHQN
AADKGFTLDINVQERRSVVFEPGVTKTLFDSNWAGEICFEEKNVLGRNGM
LGLDLRRSMASPFTSFSVRVGNNRFGQLGAWQASLFRDSISSASASGLGR
GTLGGGYANSSMGPAASAPVFSTASPRGVPRDIGLLARSISGAQHRRAVA
TADTASA
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