prot_C-linearis_contig11.1372.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig11.1372.1
Unique Nameprot_C-linearis_contig11.1372.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length928
Homology
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BLAST of mRNA_C-linearis_contig11.1372.1 vs. uniprot
Match: A0A6H5JMY3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMY3_9PHAE)

HSP 1 Score: 270 bits (690), Expect = 4.060e-73
Identity = 165/208 (79.33%), Postives = 179/208 (86.06%), Query Frame = 0 
Query:    1 MGKSGRTLLVALLALLVSPDVLGFSLSPAGARHMPPQQQQRTARGKRSMASRPLSLSADPRFDSLVERAEAAAKAPKEAVPVFKSQEDDAPATVAEVQQEVSSATTKVVAEQRPPSMSAAGSGQAYDSAVSVGSAGLQVVEGLAVLAAVPAILTALKKQQATQERKEKNQARADELARGRQARADAKVAALAQAAIDRKEKQEGIAAR 208
            MGKSGRTLLVALLALLVSPDVLGFSLSPAGAR    QQ QR  RGKR  A+R L+++ADPRFDSLV+R E AAKAP E+VPVFKSQE DAPAT+AEV+++V+          RPPS+ AAGSGQAYDSAVSVGS GLQVVEGLAVLAAVPAILTAL KQ+ATQERKEKNQARADELA+GRQARADAK AALAQAAIDRKEKQEGIA R
Sbjct:    1 MGKSGRTLLVALLALLVSPDVLGFSLSPAGARRSR-QQHQRAPRGKRLSAARTLNMAADPRFDSLVDRVETAAKAPVESVPVFKSQEADAPATIAEVKEQVAPXXXXXXXXXRPPSVLAAGSGQAYDSAVSVGSVGLQVVEGLAVLAAVPAILTALNKQKATQERKEKNQARADELAKGRQARADAKAAALAQAAIDRKEKQEGIAQR 207
[Close]
BLAST of mRNA_C-linearis_contig11.1372.1 vs. uniprot
Match: D8LKJ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKJ5_ECTSI)

HSP 1 Score: 244 bits (623), Expect = 1.270e-65
Identity = 152/208 (73.08%), Postives = 167/208 (80.29%), Query Frame = 0 
Query:    1 MGKSGRTLLVALLALLVSPDVLGFSLSPAGARHMPPQQQQRTARGKRSMASRPLSLSADPRFDSLVERAEAAAKAPKEAVPVFKSQEDDAPATVAEVQQEVSSATTKVVAEQRPPSMSAAGSGQAYDSAVSVGSAGLQVVEGLAVLAAVPAILTALKKQQATQERKEKNQARADELARGRQARADAKVAALAQAAIDRKEKQEGIAAR 208
            MGKSGRTLLVALLALLVSPDVLGFSLSPAGAR    QQ QR  RGKRS A+R L+++ADPRFD LV+R E AAKAP+E++PVFKSQE DAPAT+AEV+++V                       AYDSAVSVGS GLQV EGLAVLAAVPAILTAL KQ+ATQERK+KNQARADELA+GRQARADAK AALAQAAIDRKEKQEGIA R
Sbjct:    1 MGKSGRTLLVALLALLVSPDVLGFSLSPAGARRSR-QQHQRAPRGKRSSAARTLNMAADPRFDGLVDRVETAAKAPRESIPVFKSQEADAPATIAEVKEQVXXXXXXXXXXXXXXXXXXXXXXXAYDSAVSVGSVGLQVAEGLAVLAAVPAILTALNKQKATQERKDKNQARADELAKGRQARADAKAAALAQAAIDRKEKQEGIAQR 207
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1372.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JMY3_9PHAE4.060e-7379.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKJ5_ECTSI1.270e-6573.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 264..551
NoneNo IPR availableCOILSCoilCoilcoord: 231..251
NoneNo IPR availableCOILSCoilCoilcoord: 158..178
NoneNo IPR availablePANTHERPTHR43939FAMILY NOT NAMEDcoord: 88..576
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 24..927
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 19..23
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..23
score: 0.903

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:3206453..3216427 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1372.1mRNA_C-linearis_contig11.1372.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig11 3206338..3217283 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig11.1372.1 ID=prot_C-linearis_contig11.1372.1|Name=mRNA_C-linearis_contig11.1372.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=928bp
MGKSGRTLLVALLALLVSPDVLGFSLSPAGARHMPPQQQQRTARGKRSMA
SRPLSLSADPRFDSLVERAEAAAKAPKEAVPVFKSQEDDAPATVAEVQQE
VSSATTKVVAEQRPPSMSAAGSGQAYDSAVSVGSAGLQVVEGLAVLAAVP
AILTALKKQQATQERKEKNQARADELARGRQARADAKVAALAQAAIDRKE
KQEGIAARIEAARIEEERQESVRQMVLEAQVKKQAEEAAAAKVAAEEAAK
EKAASEARREASRIARESKMAEKAAEEAKAAELKAKHEAEAKEAAEAAEL
KAKQEAEAKAAAEAAELEAKQEAEAKAAAEAAELKAKQEAEAKAAAEAAE
LKAKQEAEAKAAELKAKQEAEAKAVAEAAELKAKQEAEAKAAAEAAELKA
KQEAEVKAAAEAAEVKAKQEAKVKAAAEAAELKAKQEAEAKAVAEAAELK
AKQEAKAEAAAEAAEVKAKQEAEAKAAAEAAEVKAKQEAEAKAAAEAAEL
KAKEEAEAKAAAEAAELKAKQEAEAKAAAEAAELKAKQAELEAAAAIKAE
QTKRQTAGLTARQLREQTNAQNAADAESKSADSAPQKTNWTSNVPAGGGV
GDEAAASEGGSAGSAGSAAAAPLPMMAGLAGRKTARVSGPGRRWGGGRAF
SAAARAAGAGSGAPSLFSAAVAVEGLTVMRLRGVGSEAESEPADSSRIYS
KGGQSYRRGAYKVGGSSPPAPAPREYGPTSSSSASSSSYAPASSSSRLCA
PYPSTSNLSAAAVAWDSMRRKSYGKGAFKDNGSSARGAGDYIGRLSSPPR
SPSFSSQSPPRKTRPVSPADPNSGAFTQSAAAAATAATAAYAAGAGAQGG
GKVTPPTKQPRRARVPTPGMSKRAATRSAGAAASKKSARSSRPVTCAEWM
TRRSKAPERSPSRPMSVAKGMNSRVKT*
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