mRNA_C-linearis_contig11.1372.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig11.1372.1 vs. uniprot
Match: A0A6H5JMY3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMY3_9PHAE) HSP 1 Score: 270 bits (690), Expect = 1.110e-71 Identity = 165/208 (79.33%), Postives = 179/208 (86.06%), Query Frame = 2
Query: 116 MGKSGRTLLVALLALLVSPDVLGFSLSPAGARHMPPQQQQRTARGKRSMASRPLSLSADPRFDSLVERAEAAAKAPKEAVPVFKSQEDDAPATVAEVQQEVSSATTKVVAEQRPPSMSAAGSGQAYDSAVSVGSAGLQVVEGLAVLAAVPAILTALKKQQATQERKEKNQARADELARGRQARADAKVAALAQAAIDRKEKQEGIAAR 739
MGKSGRTLLVALLALLVSPDVLGFSLSPAGAR QQ QR RGKR A+R L+++ADPRFDSLV+R E AAKAP E+VPVFKSQE DAPAT+AEV+++V+ RPPS+ AAGSGQAYDSAVSVGS GLQVVEGLAVLAAVPAILTAL KQ+ATQERKEKNQARADELA+GRQARADAK AALAQAAIDRKEKQEGIA R
Sbjct: 1 MGKSGRTLLVALLALLVSPDVLGFSLSPAGARRSR-QQHQRAPRGKRLSAARTLNMAADPRFDSLVDRVETAAKAPVESVPVFKSQEADAPATIAEVKEQVAPXXXXXXXXXRPPSVLAAGSGQAYDSAVSVGSVGLQVVEGLAVLAAVPAILTALNKQKATQERKEKNQARADELAKGRQARADAKAAALAQAAIDRKEKQEGIAQR 207
BLAST of mRNA_C-linearis_contig11.1372.1 vs. uniprot
Match: D8LKJ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKJ5_ECTSI) HSP 1 Score: 244 bits (623), Expect = 1.390e-64 Identity = 152/208 (73.08%), Postives = 167/208 (80.29%), Query Frame = 2
Query: 116 MGKSGRTLLVALLALLVSPDVLGFSLSPAGARHMPPQQQQRTARGKRSMASRPLSLSADPRFDSLVERAEAAAKAPKEAVPVFKSQEDDAPATVAEVQQEVSSATTKVVAEQRPPSMSAAGSGQAYDSAVSVGSAGLQVVEGLAVLAAVPAILTALKKQQATQERKEKNQARADELARGRQARADAKVAALAQAAIDRKEKQEGIAAR 739
MGKSGRTLLVALLALLVSPDVLGFSLSPAGAR QQ QR RGKRS A+R L+++ADPRFD LV+R E AAKAP+E++PVFKSQE DAPAT+AEV+++V AYDSAVSVGS GLQV EGLAVLAAVPAILTAL KQ+ATQERK+KNQARADELA+GRQARADAK AALAQAAIDRKEKQEGIA R
Sbjct: 1 MGKSGRTLLVALLALLVSPDVLGFSLSPAGARRSR-QQHQRAPRGKRSSAARTLNMAADPRFDGLVDRVETAAKAPRESIPVFKSQEADAPATIAEVKEQVXXXXXXXXXXXXXXXXXXXXXXXAYDSAVSVGSVGLQVAEGLAVLAAVPAILTALNKQKATQERKDKNQARADELAKGRQARADAKAAALAQAAIDRKEKQEGIAQR 207 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1372.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig11.1372.1 >prot_C-linearis_contig11.1372.1 ID=prot_C-linearis_contig11.1372.1|Name=mRNA_C-linearis_contig11.1372.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=928bp MGKSGRTLLVALLALLVSPDVLGFSLSPAGARHMPPQQQQRTARGKRSMAback to top mRNA from alignment at C-linearis_contig11:3206338..3217283+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig11.1372.1 ID=mRNA_C-linearis_contig11.1372.1|Name=mRNA_C-linearis_contig11.1372.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=10946bp|location=Sequence derived from alignment at C-linearis_contig11:3206338..3217283+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig11:3206338..3217283+ >mRNA_C-linearis_contig11.1372.1 ID=mRNA_C-linearis_contig11.1372.1|Name=mRNA_C-linearis_contig11.1372.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=5568bp|location=Sequence derived from alignment at C-linearis_contig11:3206338..3217283+ (Chordaria linearis ClinC8C monoicous)back to top |