prot_C-linearis_contig11.1357.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig11.1357.1
Unique Nameprot_C-linearis_contig11.1357.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length270
Homology
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BLAST of mRNA_C-linearis_contig11.1357.1 vs. uniprot
Match: D8LKM9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKM9_ECTSI)

HSP 1 Score: 313 bits (803), Expect = 1.070e-104
Identity = 180/267 (67.42%), Postives = 200/267 (74.91%), Query Frame = 0 
Query:    3 RLASACLALTLSCASGFIPPAPHASFPRPRARESRTAVDLHAGGGACGEXXXXXXXXXXXPDTSSSLQQHALTLDTTNLLSLDLSGAMAHHGDGGGALASAVTPLLVASAAPGNPSTASGLFGIAALVIALGAGALVFSTVTGKNGLGAFLTQEKGTNPFYQDTMAKYVPKTPDILNKIRLPDLDFVDVYNQPPSPDDYVDMEEDTTPGPVRTNTGTPDPNAIATAESLRQKLLMAVQAKDYDLASSLERELANFMRKNGMGFEGDQ 269
            RL +ACLAL +S A+GF+ PAP ASFP        TAVDL  GG + GE           PD SS L Q     D   + + D+ G  A   DGG  + S V+ LL+ASAAPGNPSTASGLFGIAALVIALGAG LV STVTGKNGLGAFLTQEKG+NPFYQDTMAK+ PKTPDILNKIRLPDLDFVDVYNQPP+PDDYVD+E+D T      N G PD + +ATAE+LRQKLLMAVQAKDYDLASSLERELA F+RKNGMGFEGDQ
Sbjct:    4 RLFAACLALVVSYAAGFVSPAPRASFPSTTRARGITAVDLLPGGASGGEIATAI------PDASSLLLQRVGLADVGGVHA-DVVGPAAAAADGGEGVGSLVSSLLLASAAPGNPSTASGLFGIAALVIALGAGVLVASTVTGKNGLGAFLTQEKGSNPFYQDTMAKFTPKTPDILNKIRLPDLDFVDVYNQPPAPDDYVDLEQDVT-FDAMANKGAPDADTVATAEALRQKLLMAVQAKDYDLASSLERELATFLRKNGMGFEGDQ 262
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1357.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKM9_ECTSI1.070e-10467.42Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..13
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..269
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..15
score: 5.0
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..18
score: 0.677
NoneNo IPR availableTMHMMTMhelixcoord: 122..144

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:3089536..3093769 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1357.1mRNA_C-linearis_contig11.1357.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig11 3088415..3093808 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig11.1357.1 ID=prot_C-linearis_contig11.1357.1|Name=mRNA_C-linearis_contig11.1357.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=270bp
MSRLASACLALTLSCASGFIPPAPHASFPRPRARESRTAVDLHAGGGACG
EEMAAAAAAAIMPDTSSSLQQHALTLDTTNLLSLDLSGAMAHHGDGGGAL
ASAVTPLLVASAAPGNPSTASGLFGIAALVIALGAGALVFSTVTGKNGLG
AFLTQEKGTNPFYQDTMAKYVPKTPDILNKIRLPDLDFVDVYNQPPSPDD
YVDMEEDTTPGPVRTNTGTPDPNAIATAESLRQKLLMAVQAKDYDLASSL
ERELANFMRKNGMGFEGDQ*
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